RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 KRTAP11-1Q8IUC1 163 aa10.65□□□□□ -0.7
DDX41-217ENST00000515562 KRTAP7-1Q8IUC3 87 aa10.65□□□□□ -0.7
DDX41-217ENST00000515562 ALKBH7Q9BT30 221 aaPredicted RBP10.65□□□□□ -0.7
DDX41-217ENST00000515562 CDKN2A-AS1Q9UH64 79 aa10.65□□□□□ -0.7
DDX41-217ENST00000515562 LINC01549A6NIU2 74 aa10.64□□□□□ -0.71
DDX41-217ENST00000515562 H0Y9J4 135 aa10.64□□□□□ -0.71
DDX41-217ENST00000515562 ERASQ7Z444 233 aa10.64□□□□□ -0.71
DDX41-217ENST00000515562 SCGB3A1Q96QR1 104 aa10.63□□□□□ -0.71
DDX41-217ENST00000515562 SEC11CQ9BY50 192 aa10.63□□□□□ -0.71
DDX41-217ENST00000515562 GNB1LQ9BYB4 327 aa10.63□□□□□ -0.71
DDX41-217ENST00000515562 F8VRH5 84 aa10.62□□□□□ -0.71
DDX41-217ENST00000515562 CXCL5P42830 114 aa10.62□□□□□ -0.71
DDX41-217ENST00000515562 LRP2P98164 4655 aa10.62□□□□□ -0.71
DDX41-217ENST00000515562 COX19Q49B96 90 aa10.61□□□□□ -0.71
DDX41-217ENST00000515562 LINC00469Q8N7U9 141 aa10.61□□□□□ -0.71
DDX41-217ENST00000515562 LINC01546A6NGU7 62 aa10.6□□□□□ -0.71
DDX41-217ENST00000515562 TINCRA0A1B0GVN0 87 aa10.59□□□□□ -0.71
DDX41-217ENST00000515562 IFITM2Q01629 132 aa10.59□□□□□ -0.71
DDX41-217ENST00000515562 SMIM1B2RUZ4 78 aa10.58□□□□□ -0.72
DDX41-217ENST00000515562 IGLV5-45A0A087WSX0 123 aa10.57□□□□□ -0.72
DDX41-217ENST00000515562 LBHQ53QV2 105 aaPredicted RBP10.57□□□□□ -0.72
DDX41-217ENST00000515562 PDZD11Q5EBL8 140 aa10.57□□□□□ -0.72
DDX41-217ENST00000515562 PRR26Q8N8Z3 221 aa10.57□□□□□ -0.72
DDX41-217ENST00000515562 XAGE1AQ9HD64 81 aa10.57□□□□□ -0.72
DDX41-217ENST00000515562 IGLV1-50A0A075B6I6 118 aa10.56□□□□□ -0.72
DDX41-217ENST00000515562 FA2HQ7L5A8 372 aa10.56□□□□□ -0.72
DDX41-217ENST00000515562 COMMD7Q86VX2 200 aa10.56□□□□□ -0.72
DDX41-217ENST00000515562 SMCO4Q9NRQ5 59 aa10.56□□□□□ -0.72
DDX41-217ENST00000515562 C22orf24Q9Y442 160 aa10.56□□□□□ -0.72
DDX41-217ENST00000515562 NUPR1O60356 82 aa10.55□□□□□ -0.72
DDX41-217ENST00000515562 RHEBQ15382 184 aa10.55□□□□□ -0.72
DDX41-217ENST00000515562 COX7B2Q8TF08 81 aa10.55□□□□□ -0.72
DDX41-217ENST00000515562 MRPL18Q9H0U6 180 aaKnown RBP10.55□□□□□ -0.72
DDX41-217ENST00000515562 CST9LQ9H4G1 147 aa10.55□□□□□ -0.72
DDX41-217ENST00000515562 TP73-AS1Q9UF72 201 aa10.55□□□□□ -0.72
DDX41-217ENST00000515562 KRTAP1-4P0C5Y4 121 aa10.54□□□□□ -0.72
DDX41-217ENST00000515562 FABP9Q0Z7S8 132 aa10.54□□□□□ -0.72
DDX41-217ENST00000515562 PMVKQ15126 192 aa10.54□□□□□ -0.72
DDX41-217ENST00000515562 C10orf91Q5T1B1 145 aa10.53□□□□□ -0.72
DDX41-217ENST00000515562 ZNF861PO60384 105 aa10.52□□□□□ -0.73
DDX41-217ENST00000515562 RPL13AP40429 203 aaKnown RBP10.52□□□□□ -0.73
DDX41-217ENST00000515562 MRPL55Q7Z7F7 128 aaKnown RBP10.52□□□□□ -0.73
DDX41-217ENST00000515562 CARHSP1Q9Y2V2 147 aaKnown RBP10.52□□□□□ -0.73
DDX41-217ENST00000515562 RNF213Q63HN8 5207 aa10.51□□□□□ -0.73
DDX41-217ENST00000515562 H3BRM9 83 aa10.51□□□□□ -0.73
DDX41-217ENST00000515562 RPS10P5Q9NQ39 176 aa10.51□□□□□ -0.73
DDX41-217ENST00000515562 SPINK8P0C7L1 97 aa10.5□□□□□ -0.73
DDX41-217ENST00000515562 ATP5LO75964 103 aa10.48□□□□□ -0.73
DDX41-217ENST00000515562 IGLC3P0DOY3 106 aa10.47□□□□□ -0.73
DDX41-217ENST00000515562 RPL28P46779 137 aaKnown RBP10.47□□□□□ -0.73
DDX41-217ENST00000515562 BCE1O60756 84 aa10.46□□□□□ -0.73
DDX41-217ENST00000515562 IGLV5-37A0A075B6J1 123 aa10.45□□□□□ -0.74
DDX41-217ENST00000515562 RAB5BP61020 215 aa10.45□□□□□ -0.74
DDX41-217ENST00000515562 C18orf32Q8TCD1 76 aa10.45□□□□□ -0.74
DDX41-217ENST00000515562 LINC00167Q96N53 147 aa10.45□□□□□ -0.74
DDX41-217ENST00000515562 TRAPPC1Q9Y5R8 145 aa10.45□□□□□ -0.74
DDX41-217ENST00000515562 A0A096LNJ9 63 aa10.44□□□□□ -0.74
DDX41-217ENST00000515562 IGLV5-39A0A0G2JS06 123 aa10.44□□□□□ -0.74
DDX41-217ENST00000515562 HBDP02042 147 aa10.44□□□□□ -0.74
DDX41-217ENST00000515562 LINC00614P0C842 121 aa10.44□□□□□ -0.74
DDX41-217ENST00000515562 NDUFA6P56556 154 aa10.44□□□□□ -0.74
DDX41-217ENST00000515562 NKAPP1Q8N9T2 125 aa10.44□□□□□ -0.74
DDX41-217ENST00000515562 RPL37AP8A6NKH3 93 aa10.43□□□□□ -0.74
DDX41-217ENST00000515562 GAGE10A6NGK3 116 aa10.42□□□□□ -0.74
DDX41-217ENST00000515562 ZNF22P17026 224 aaPredicted RBP10.42□□□□□ -0.74
DDX41-217ENST00000515562 URB1-AS1Q96HZ7 61 aa10.42□□□□□ -0.74
DDX41-217ENST00000515562 PFN2P35080 140 aa10.4□□□□□ -0.74
DDX41-217ENST00000515562 NDUFA5Q16718 116 aa10.4□□□□□ -0.74
DDX41-217ENST00000515562 SFTA2Q6UW10 78 aa10.4□□□□□ -0.74
DDX41-217ENST00000515562 APOC3P02656 99 aa10.39□□□□□ -0.75
DDX41-217ENST00000515562 COX17Q14061 63 aa10.39□□□□□ -0.75
DDX41-217ENST00000515562 PMCHL1Q16048 86 aa10.39□□□□□ -0.75
DDX41-217ENST00000515562 SVBPQ8N300 66 aa10.39□□□□□ -0.75
DDX41-217ENST00000515562 ERG28Q9UKR5 140 aa10.39□□□□□ -0.75
DDX41-217ENST00000515562 SNAPINO95295 136 aa10.38□□□□□ -0.75
DDX41-217ENST00000515562 UBE2AP49459 152 aa10.37□□□□□ -0.75
DDX41-217ENST00000515562 BAGE3Q86Y29 109 aa10.37□□□□□ -0.75
DDX41-217ENST00000515562 LPAP08519 4548 aa10.37□□□□□ -0.75
DDX41-217ENST00000515562 C11orf86A6NJI1 115 aa10.36□□□□□ -0.75
DDX41-217ENST00000515562 CRYGAP11844 174 aa10.36□□□□□ -0.75
DDX41-217ENST00000515562 TMEM170BQ5T4T1 132 aa10.36□□□□□ -0.75
DDX41-217ENST00000515562 KRTAP13-1Q8IUC0 172 aa10.36□□□□□ -0.75
DDX41-217ENST00000515562 SND1-IT1Q9HBX3 110 aa10.36□□□□□ -0.75
DDX41-217ENST00000515562 IGKV2-28A0A075B6P5 120 aa10.35□□□□□ -0.75
DDX41-217ENST00000515562 A0A087X002 238 aa10.35□□□□□ -0.75
DDX41-217ENST00000515562 IGKV2D-28P01615 120 aa10.35□□□□□ -0.75
DDX41-217ENST00000515562 RPL24P83731 157 aaKnown RBP10.35□□□□□ -0.75
DDX41-217ENST00000515562 VPREB1P12018 145 aa10.34□□□□□ -0.75
DDX41-217ENST00000515562 PRR4Q16378 134 aa10.34□□□□□ -0.75
DDX41-217ENST00000515562 SCO1O75880 301 aa10.33□□□□□ -0.76
DDX41-217ENST00000515562 TYMSOSQ8TAI1 123 aa10.33□□□□□ -0.76
DDX41-217ENST00000515562 CHTOPQ9Y3Y2 248 aaKnown RBP10.33□□□□□ -0.76
DDX41-217ENST00000515562 CHCHD1Q96BP2 118 aaKnown RBP10.32□□□□□ -0.76
DDX41-217ENST00000515562 ZNF625Q96I27 306 aaPredicted RBP10.32□□□□□ -0.76
DDX41-217ENST00000515562 FAM229BQ4G0N7 80 aa10.3□□□□□ -0.76
DDX41-217ENST00000515562 TMEM126AQ9H061 195 aa10.3□□□□□ -0.76
DDX41-217ENST00000515562 TRAV12-1A0A0B4J245 112 aa10.29□□□□□ -0.76
DDX41-217ENST00000515562 TSPAN13O95857 204 aa10.29□□□□□ -0.76
DDX41-217ENST00000515562 FAM19A1Q7Z5A9 133 aa10.29□□□□□ -0.76
DDX41-217ENST00000515562 IFI27L1Q96BM0 104 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms