RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 NLRP1Q9C000 1473 aa0.14□□□□□ -2.39
NUP54-215ENST00000514313 PSMG4Q5JS54 123 aa0.13□□□□□ -2.39
NUP54-215ENST00000514313 SERP2Q8N6R1 65 aa0.13□□□□□ -2.39
NUP54-215ENST00000514313 TEX14Q8IWB6 1497 aa0.13□□□□□ -2.39
NUP54-215ENST00000514313 PLEKHH2Q8IVE3 1493 aa0.12□□□□□ -2.39
NUP54-215ENST00000514313 DMBT1Q9UGM3 2413 aaPredicted RBP0.12□□□□□ -2.39
NUP54-215ENST00000514313 K7EQZ3 153 aa0.11□□□□□ -2.39
NUP54-215ENST00000514313 ANKRD17O75179 2603 aaKnown RBP0.11□□□□□ -2.39
NUP54-215ENST00000514313 SPRR2GQ9BYE4 73 aa0.1□□□□□ -2.39
NUP54-215ENST00000514313 UBR5O95071 2799 aaPredicted RBP0.09□□□□□ -2.39
NUP54-215ENST00000514313 UQCRHP07919 91 aa0.09□□□□□ -2.4
NUP54-215ENST00000514313 XRN1Q8IZH2 1706 aaKnown RBP0.09□□□□□ -2.4
NUP54-215ENST00000514313 FYCO1Q9BQS8 1478 aa0.09□□□□□ -2.4
NUP54-215ENST00000514313 SETBP1Q9Y6X0 1596 aa0.08□□□□□ -2.4
NUP54-215ENST00000514313 DEFB107AQ8IZN7 70 aa0.08□□□□□ -2.4
NUP54-215ENST00000514313 A0A1B0GU69 56 aa0.07□□□□□ -2.4
NUP54-215ENST00000514313 COL5A1-AS1Q5SY13 56 aa0.07□□□□□ -2.4
NUP54-215ENST00000514313 TSC2P49815 1807 aa0.06□□□□□ -2.4
NUP54-215ENST00000514313 H3BQF6 201 aa0.06□□□□□ -2.4
NUP54-215ENST00000514313 ABCC10Q5T3U5 1492 aa0.05□□□□□ -2.4
NUP54-215ENST00000514313 FAUP35544 74 aaKnown RBP0.05□□□□□ -2.4
NUP54-215ENST00000514313 ABCA2Q9BZC7 2435 aa0.04□□□□□ -2.4
NUP54-215ENST00000514313 S100A8P05109 93 aa0.04□□□□□ -2.4
NUP54-215ENST00000514313 C6orf201Q7Z4U5 140 aa0.04□□□□□ -2.4
NUP54-215ENST00000514313 COL7A1Q02388 2944 aa0.04□□□□□ -2.4
NUP54-215ENST00000514313 A0A0G2JMZ2 1700 aa0.04□□□□□ -2.4
NUP54-215ENST00000514313 VPS8Q8N3P4 1428 aa0.04□□□□□ -2.4
NUP54-215ENST00000514313 SYS1-DBNDD2H3BUS1 97 aa0.03□□□□□ -2.4
NUP54-215ENST00000514313 NRXN1Q9ULB1 1477 aa0.03□□□□□ -2.41
NUP54-215ENST00000514313 SPTBN1Q01082 2364 aaKnown RBP0.02□□□□□ -2.41
NUP54-215ENST00000514313 H0Y9P7 68 aa0.02□□□□□ -2.41
NUP54-215ENST00000514313 NCOR1O75376 2440 aa0.02□□□□□ -2.41
NUP54-215ENST00000514313 ARMS2P0C7Q2 107 aa0.01□□□□□ -2.41
NUP54-215ENST00000514313 USMG5Q96IX5 58 aa0.01□□□□□ -2.41
NUP54-215ENST00000514313 SNHG12Q9BXW3 62 aa0.01□□□□□ -2.41
NUP54-215ENST00000514313 KNDC1Q76NI1 1749 aa0.01□□□□□ -2.41
NUP54-215ENST00000514313 VWFP04275 2813 aa0□□□□□ -2.41
NUP54-215ENST00000514313 DNAJC13O75165 2243 aa-0.01□□□□□ -2.41
NUP54-215ENST00000514313 RAPGEF2Q9Y4G8 1499 aa-0.01□□□□□ -2.41
NUP54-215ENST00000514313 PRM1P04553 51 aa-0.01□□□□□ -2.41
NUP54-215ENST00000514313 PKIAP61925 76 aa-0.01□□□□□ -2.41
NUP54-215ENST00000514313 GNGT1P63211 74 aa-0.01□□□□□ -2.41
NUP54-215ENST00000514313 KIAA0556O60303 1618 aa-0.02□□□□□ -2.41
NUP54-215ENST00000514313 TRBV7-7A0A0K0K1E9 115 aa-0.02□□□□□ -2.41
NUP54-215ENST00000514313 PAPPA2Q9BXP8 1791 aa-0.02□□□□□ -2.41
NUP54-215ENST00000514313 MARF1Q9Y4F3 1742 aaKnown RBP-0.03□□□□□ -2.41
NUP54-215ENST00000514313 FXYD6Q9H0Q3 95 aa-0.03□□□□□ -2.41
NUP54-215ENST00000514313 TENM4Q6N022 2769 aa-0.03□□□□□ -2.41
NUP54-215ENST00000514313 UQCRHLA0A096LP55 91 aa-0.04□□□□□ -2.42
NUP54-215ENST00000514313 COX8AP10176 69 aa-0.05□□□□□ -2.42
NUP54-215ENST00000514313 HMCN2Q8NDA2 5059 aa-0.06□□□□□ -2.42
NUP54-215ENST00000514313 DSTQ03001 7570 aaKnown RBP-0.06□□□□□ -2.42
NUP54-215ENST00000514313 PIEZO2Q9H5I5 2752 aa-0.06□□□□□ -2.42
NUP54-215ENST00000514313 PSENENQ9NZ42 101 aa-0.06□□□□□ -2.42
NUP54-215ENST00000514313 KLK9Q2XQG4 91 aa-0.07□□□□□ -2.42
NUP54-215ENST00000514313 KRTAP6-1Q3LI64 71 aa-0.07□□□□□ -2.42
NUP54-215ENST00000514313 DEFB105AQ8NG35 78 aa-0.07□□□□□ -2.42
NUP54-215ENST00000514313 CRIPTQ9P021 101 aa-0.07□□□□□ -2.42
NUP54-215ENST00000514313 NSD1Q96L73 2696 aaPredicted RBP-0.07□□□□□ -2.42
NUP54-215ENST00000514313 MUC12Q9UKN1 5478 aa-0.08□□□□□ -2.42
NUP54-215ENST00000514313 CACNA1AO00555 2505 aa-0.08□□□□□ -2.42
NUP54-215ENST00000514313 ABCC2Q92887 1545 aa-0.08□□□□□ -2.42
NUP54-215ENST00000514313 GVINP1Q7Z2Y8 2422 aa-0.08□□□□□ -2.42
NUP54-215ENST00000514313 CHD6Q8TD26 2715 aa-0.08□□□□□ -2.42
NUP54-215ENST00000514313 TARBP1Q13395 1621 aaKnown RBP-0.09□□□□□ -2.42
NUP54-215ENST00000514313 URB1O60287 2271 aaKnown RBP-0.09□□□□□ -2.42
NUP54-215ENST00000514313 F8WEM9 126 aa-0.09□□□□□ -2.42
NUP54-215ENST00000514313 SPINK4O60575 86 aa-0.09□□□□□ -2.42
NUP54-215ENST00000514313 ETDBQ3ZM63 59 aa-0.09□□□□□ -2.42
NUP54-215ENST00000514313 ZNF720Q7Z2F6 126 aa-0.1□□□□□ -2.43
NUP54-215ENST00000514313 FLNCQ14315 2725 aa-0.1□□□□□ -2.43
NUP54-215ENST00000514313 FMN2Q9NZ56 1722 aa-0.1□□□□□ -2.43
NUP54-215ENST00000514313 CSPG4Q6UVK1 2322 aa-0.1□□□□□ -2.43
NUP54-215ENST00000514313 EDC4Q6P2E9 1401 aaKnown RBP-0.11□□□□□ -2.43
NUP54-215ENST00000514313 PTPN13Q12923 2485 aa-0.11□□□□□ -2.43
NUP54-215ENST00000514313 HMGN3Q15651 99 aa-0.11□□□□□ -2.43
NUP54-215ENST00000514313 SHPRHQ149N8 1683 aa-0.11□□□□□ -2.43
NUP54-215ENST00000514313 SLIT1O75093 1534 aa-0.12□□□□□ -2.43
NUP54-215ENST00000514313 SPRR2DP22532 72 aa-0.12□□□□□ -2.43
NUP54-215ENST00000514313 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.13□□□□□ -2.43
NUP54-215ENST00000514313 CCNB3Q8WWL7 1395 aa-0.13□□□□□ -2.43
NUP54-215ENST00000514313 CPSF4LA6NMK7 179 aaKnown RBP-0.13□□□□□ -2.43
NUP54-215ENST00000514313 LEPROTL1O95214 131 aa-0.13□□□□□ -2.43
NUP54-215ENST00000514313 HIGD1BQ9P298 99 aa-0.13□□□□□ -2.43
NUP54-215ENST00000514313 APLNQ9ULZ1 77 aa-0.13□□□□□ -2.43
NUP54-215ENST00000514313 PKD1L1Q8TDX9 2849 aa-0.14□□□□□ -2.43
NUP54-215ENST00000514313 D6R8Y8 96 aa-0.14□□□□□ -2.43
NUP54-215ENST00000514313 MUSTN1Q8IVN3 82 aa-0.14□□□□□ -2.43
NUP54-215ENST00000514313 ANKRD26Q9UPS8 1709 aa-0.14□□□□□ -2.43
NUP54-215ENST00000514313 ANKRD36A6QL64 1941 aa-0.15□□□□□ -2.43
NUP54-215ENST00000514313 CCDC141Q6ZP82 1450 aa-0.15□□□□□ -2.43
NUP54-215ENST00000514313 MUC2Q02817 5179 aa-0.15□□□□□ -2.43
NUP54-215ENST00000514313 AKAP12Q02952 1782 aa-0.16□□□□□ -2.43
NUP54-215ENST00000514313 ALKAL2Q6UX46 152 aa-0.16□□□□□ -2.44
NUP54-215ENST00000514313 PCLOQ9Y6V0 5065 aa-0.16□□□□□ -2.44
NUP54-215ENST00000514313 HERC1Q15751 4861 aa-0.16□□□□□ -2.44
NUP54-215ENST00000514313 MYCBP2O75592 4640 aa-0.16□□□□□ -2.44
NUP54-215ENST00000514313 STAB1Q9NY15 2570 aa-0.16□□□□□ -2.44
NUP54-215ENST00000514313 LRP2P98164 4655 aa-0.17□□□□□ -2.44
NUP54-215ENST00000514313 KMT2CQ8NEZ4 4911 aaKnown RBP-0.17□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms