RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 C11orf45Q8TAV5 145 aa10.17□□□□□ -0.78
PHF3-209ENST00000509330 RPL13AP40429 203 aaKnown RBP10.17□□□□□ -0.78
PHF3-209ENST00000509330 MALP21145 153 aa10.16□□□□□ -0.78
PHF3-209ENST00000509330 ETDBQ3ZM63 59 aa10.16□□□□□ -0.78
PHF3-209ENST00000509330 DEFB131BA0A096LNP1 70 aa10.16□□□□□ -0.78
PHF3-209ENST00000509330 K7EIL1 84 aa10.16□□□□□ -0.78
PHF3-209ENST00000509330 TIMM17BO60830 172 aa10.16□□□□□ -0.78
PHF3-209ENST00000509330 UBE2WQ96B02 151 aa10.16□□□□□ -0.78
PHF3-209ENST00000509330 TRIAP1O43715 76 aa10.15□□□□□ -0.78
PHF3-209ENST00000509330 HERV-K104P63124 156 aa10.14□□□□□ -0.79
PHF3-209ENST00000509330 HUWE1Q7Z6Z7 4374 aaKnown RBP10.14□□□□□ -0.79
PHF3-209ENST00000509330 TEX48A0A1B0GUV7 120 aa10.14□□□□□ -0.79
PHF3-209ENST00000509330 COX7A2LO14548 114 aa10.14□□□□□ -0.79
PHF3-209ENST00000509330 GAGE12HA6NDE8 117 aa10.14□□□□□ -0.79
PHF3-209ENST00000509330 C9orf116Q5BN46 136 aaPredicted RBP10.13□□□□□ -0.79
PHF3-209ENST00000509330 STAB2Q8WWQ8 2551 aa10.13□□□□□ -0.79
PHF3-209ENST00000509330 IFITM1P13164 125 aa10.13□□□□□ -0.79
PHF3-209ENST00000509330 CD164L2Q6UWJ8 174 aa10.13□□□□□ -0.79
PHF3-209ENST00000509330 CLEC2BQ92478 149 aa10.12□□□□□ -0.79
PHF3-209ENST00000509330 CKS1BP61024 79 aa10.12□□□□□ -0.79
PHF3-209ENST00000509330 ESRGQ1W209 222 aa10.12□□□□□ -0.79
PHF3-209ENST00000509330 C6orf223Q8N319 242 aa10.12□□□□□ -0.79
PHF3-209ENST00000509330 PRO0461Q9UI25 63 aa10.12□□□□□ -0.79
PHF3-209ENST00000509330 SMCPP49901 116 aaPredicted RBP10.11□□□□□ -0.79
PHF3-209ENST00000509330 ENHOQ6UWT2 76 aa10.11□□□□□ -0.79
PHF3-209ENST00000509330 CRPP02741 224 aa10.11□□□□□ -0.79
PHF3-209ENST00000509330 F8W1H4 67 aa10.1□□□□□ -0.79
PHF3-209ENST00000509330 FOXI1Q12951 378 aa10.1□□□□□ -0.79
PHF3-209ENST00000509330 LYRM7Q5U5X0 104 aa10.1□□□□□ -0.79
PHF3-209ENST00000509330 CFAP161Q6P656 301 aa10.1□□□□□ -0.79
PHF3-209ENST00000509330 COL7A1Q02388 2944 aa10.09□□□□□ -0.79
PHF3-209ENST00000509330 C9JAW5 83 aa10.09□□□□□ -0.79
PHF3-209ENST00000509330 VPS25Q9BRG1 176 aa10.09□□□□□ -0.79
PHF3-209ENST00000509330 SND1-IT1Q9HBX3 110 aa10.09□□□□□ -0.79
PHF3-209ENST00000509330 K7ERU9 68 aa10.08□□□□□ -0.8
PHF3-209ENST00000509330 CCL18P55774 89 aa10.08□□□□□ -0.8
PHF3-209ENST00000509330 SPATA25Q9BR10 227 aa10.08□□□□□ -0.8
PHF3-209ENST00000509330 Q8IZM0 81 aa10.08□□□□□ -0.8
PHF3-209ENST00000509330 LYSTQ99698 3801 aa10.07□□□□□ -0.8
PHF3-209ENST00000509330 KIAA0087Q14695 138 aa10.07□□□□□ -0.8
PHF3-209ENST00000509330 C10orf25Q5T742 122 aa10.07□□□□□ -0.8
PHF3-209ENST00000509330 TRBV20-1A0A075B6N2 111 aa10.06□□□□□ -0.8
PHF3-209ENST00000509330 PRR3P79522 188 aaKnown RBP10.06□□□□□ -0.8
PHF3-209ENST00000509330 SPAG11BQ08648 103 aa10.06□□□□□ -0.8
PHF3-209ENST00000509330 LINC00337Q8N6G1 96 aa10.06□□□□□ -0.8
PHF3-209ENST00000509330 IBA57-AS1B1ANH7 110 aa10.05□□□□□ -0.8
PHF3-209ENST00000509330 HIGD2BQ4VC39 106 aa10.05□□□□□ -0.8
PHF3-209ENST00000509330 UNQ6190/PRO20217Q6UXQ8 127 aa10.05□□□□□ -0.8
PHF3-209ENST00000509330 Q9HAA7 133 aa10.05□□□□□ -0.8
PHF3-209ENST00000509330 TRBV30A0A0K0K1B3 111 aa10.05□□□□□ -0.8
PHF3-209ENST00000509330 IGKV2-28A0A075B6P5 120 aa10.05□□□□□ -0.8
PHF3-209ENST00000509330 IGKV2D-28P01615 120 aa10.05□□□□□ -0.8
PHF3-209ENST00000509330 PRR34Q9NV39 138 aa10.05□□□□□ -0.8
PHF3-209ENST00000509330 OR13C6PQ8NH95 151 aa10.04□□□□□ -0.8
PHF3-209ENST00000509330 TM2D3Q9BRN9 247 aa10.04□□□□□ -0.8
PHF3-209ENST00000509330 COX6CP09669 75 aa10.03□□□□□ -0.8
PHF3-209ENST00000509330 ATXN8Q156A1 80 aa10.03□□□□□ -0.8
PHF3-209ENST00000509330 COPS9Q8WXC6 57 aa10.03□□□□□ -0.8
PHF3-209ENST00000509330 SLC25A20O43772 301 aa10.03□□□□□ -0.8
PHF3-209ENST00000509330 LINC01620Q4KN68 170 aa10.02□□□□□ -0.81
PHF3-209ENST00000509330 H3BNG1 76 aa10.02□□□□□ -0.81
PHF3-209ENST00000509330 IGKV2D-24A0A075B6R9 120 aa10.01□□□□□ -0.81
PHF3-209ENST00000509330 ANKRD29Q8N6D5 301 aa10.01□□□□□ -0.81
PHF3-209ENST00000509330 TRAV10A0A0B4J240 114 aa9.99□□□□□ -0.81
PHF3-209ENST00000509330 TENM2Q9NT68 2774 aa9.99□□□□□ -0.81
PHF3-209ENST00000509330 DNAH9Q9NYC9 4486 aa9.98□□□□□ -0.81
PHF3-209ENST00000509330 Q8NDZ9 215 aa9.97□□□□□ -0.81
PHF3-209ENST00000509330 LINC00588Q9Y4M8 146 aa9.97□□□□□ -0.81
PHF3-209ENST00000509330 TRAV13-2A0A0B4J235 113 aa9.97□□□□□ -0.81
PHF3-209ENST00000509330 NCR3O14931 201 aa9.97□□□□□ -0.81
PHF3-209ENST00000509330 SMIM11BQ8TCY0 68 aa9.97□□□□□ -0.81
PHF3-209ENST00000509330 FAM218AQ96MZ4 157 aa9.97□□□□□ -0.81
PHF3-209ENST00000509330 XAGE1AQ9HD64 81 aa9.96□□□□□ -0.81
PHF3-209ENST00000509330 DNHD1Q96M86 4753 aa9.96□□□□□ -0.81
PHF3-209ENST00000509330 LST1O00453 97 aa9.96□□□□□ -0.82
PHF3-209ENST00000509330 LINC01561Q8N1V8 128 aa9.96□□□□□ -0.82
PHF3-209ENST00000509330 NTN5Q8WTR8 489 aaPredicted RBP9.96□□□□□ -0.82
PHF3-209ENST00000509330 C1orf43Q9BWL3 253 aa9.96□□□□□ -0.82
PHF3-209ENST00000509330 KLK5Q9Y337 293 aaPredicted RBP9.96□□□□□ -0.82
PHF3-209ENST00000509330 CXCL5P42830 114 aa9.96□□□□□ -0.82
PHF3-209ENST00000509330 CARD19Q96LW7 228 aa9.96□□□□□ -0.82
PHF3-209ENST00000509330 ZNF561-AS1K7EIQ3 104 aa9.95□□□□□ -0.82
PHF3-209ENST00000509330 TEN1Q86WV5 123 aa9.95□□□□□ -0.82
PHF3-209ENST00000509330 TRAV8-4A0A0B4J246 113 aa9.95□□□□□ -0.82
PHF3-209ENST00000509330 TEX49A0A1B0GTD5 131 aa9.94□□□□□ -0.82
PHF3-209ENST00000509330 C6orf48Q9UBA6 75 aa9.94□□□□□ -0.82
PHF3-209ENST00000509330 CAMK2N2Q96S95 79 aa9.93□□□□□ -0.82
PHF3-209ENST00000509330 TRBV10-2A0A0K0K1G8 114 aa9.93□□□□□ -0.82
PHF3-209ENST00000509330 LINC01556Q5JQF7 62 aa9.93□□□□□ -0.82
PHF3-209ENST00000509330 KRTAP26-1Q6PEX3 210 aa9.93□□□□□ -0.82
PHF3-209ENST00000509330 LECT2O14960 151 aa9.92□□□□□ -0.82
PHF3-209ENST00000509330 CASC10Q5T4H9 136 aa9.91□□□□□ -0.82
PHF3-209ENST00000509330 C15orf56Q8N910 161 aa9.91□□□□□ -0.82
PHF3-209ENST00000509330 A0A087WYN8 130 aa9.91□□□□□ -0.82
PHF3-209ENST00000509330 J3QR89 54 aa9.91□□□□□ -0.82
PHF3-209ENST00000509330 Q6ZRU5 148 aa9.9□□□□□ -0.82
PHF3-209ENST00000509330 CBY1Q9Y3M2 126 aa9.9□□□□□ -0.82
PHF3-209ENST00000509330 CSMD3Q7Z407 3707 aa9.9□□□□□ -0.82
PHF3-209ENST00000509330 A0A1B0GV72 72 aa9.9□□□□□ -0.83
PHF3-209ENST00000509330 RPL28P46779 137 aaKnown RBP9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms