RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 FAM168BA1KXE4 195 aa9.68□□□□□ -0.86
HDAC4-213ENST00000496347 FAM19A5Q7Z5A7 132 aaPredicted RBP9.68□□□□□ -0.86
HDAC4-213ENST00000496347 MRPL18Q9H0U6 180 aaKnown RBP9.68□□□□□ -0.86
HDAC4-213ENST00000496347 CDKN2A-AS1Q9UH64 79 aa9.68□□□□□ -0.86
HDAC4-213ENST00000496347 CXCL5P42830 114 aa9.67□□□□□ -0.86
HDAC4-213ENST00000496347 FA2HQ7L5A8 372 aa9.67□□□□□ -0.86
HDAC4-213ENST00000496347 RPS10P5Q9NQ39 176 aa9.67□□□□□ -0.86
HDAC4-213ENST00000496347 TOMM7Q9P0U1 55 aa9.67□□□□□ -0.86
HDAC4-213ENST00000496347 M0QXV9 152 aa9.66□□□□□ -0.86
HDAC4-213ENST00000496347 C6orf226Q5I0X4 101 aa9.66□□□□□ -0.86
HDAC4-213ENST00000496347 C1orf137Q5JT78 98 aa9.66□□□□□ -0.86
HDAC4-213ENST00000496347 LINC00469Q8N7U9 141 aa9.66□□□□□ -0.86
HDAC4-213ENST00000496347 SMCO4Q9NRQ5 59 aa9.66□□□□□ -0.86
HDAC4-213ENST00000496347 IGLV5-45A0A087WSX0 123 aa9.65□□□□□ -0.86
HDAC4-213ENST00000496347 TINCRA0A1B0GVN0 87 aa9.65□□□□□ -0.86
HDAC4-213ENST00000496347 F8VRH5 84 aa9.65□□□□□ -0.86
HDAC4-213ENST00000496347 FABP9Q0Z7S8 132 aa9.65□□□□□ -0.86
HDAC4-213ENST00000496347 C9orf129Q5T035 196 aaKnown RBP9.64□□□□□ -0.87
HDAC4-213ENST00000496347 SMIM1B2RUZ4 78 aa9.63□□□□□ -0.87
HDAC4-213ENST00000496347 ODF1Q14990 250 aa9.63□□□□□ -0.87
HDAC4-213ENST00000496347 KRTAP7-1Q8IUC3 87 aa9.63□□□□□ -0.87
HDAC4-213ENST00000496347 CST9LQ9H4G1 147 aa9.63□□□□□ -0.87
HDAC4-213ENST00000496347 IGLV7-43P04211 117 aa9.62□□□□□ -0.87
HDAC4-213ENST00000496347 PMVKQ15126 192 aa9.62□□□□□ -0.87
HDAC4-213ENST00000496347 NDUFA5Q16718 116 aa9.62□□□□□ -0.87
HDAC4-213ENST00000496347 PDZD11Q5EBL8 140 aa9.62□□□□□ -0.87
HDAC4-213ENST00000496347 UBR4Q5T4S7 5183 aa9.61□□□□□ -0.87
HDAC4-213ENST00000496347 UBE2BP63146 152 aa9.61□□□□□ -0.87
HDAC4-213ENST00000496347 SVBPQ8N300 66 aa9.61□□□□□ -0.87
HDAC4-213ENST00000496347 DIRC1Q969H9 104 aa9.61□□□□□ -0.87
HDAC4-213ENST00000496347 SNAPINO95295 136 aa9.6□□□□□ -0.87
HDAC4-213ENST00000496347 KRTAP10-8P60410 259 aa9.6□□□□□ -0.87
HDAC4-213ENST00000496347 APOC3P02656 99 aa9.59□□□□□ -0.87
HDAC4-213ENST00000496347 KRTAP11-1Q8IUC1 163 aa9.59□□□□□ -0.87
HDAC4-213ENST00000496347 C18orf32Q8TCD1 76 aa9.59□□□□□ -0.87
HDAC4-213ENST00000496347 COX7B2Q8TF08 81 aa9.59□□□□□ -0.87
HDAC4-213ENST00000496347 TRAPPC1Q9Y5R8 145 aa9.59□□□□□ -0.87
HDAC4-213ENST00000496347 H3BRM9 83 aa9.58□□□□□ -0.88
HDAC4-213ENST00000496347 A0A096LNJ9 63 aa9.57□□□□□ -0.88
HDAC4-213ENST00000496347 H0Y9J4 135 aa9.57□□□□□ -0.88
HDAC4-213ENST00000496347 HBDP02042 147 aa9.57□□□□□ -0.88
HDAC4-213ENST00000496347 IGLC3P0DOY3 106 aa9.57□□□□□ -0.88
HDAC4-213ENST00000496347 XAGE1AQ9HD64 81 aa9.57□□□□□ -0.88
HDAC4-213ENST00000496347 TP73-AS1Q9UF72 201 aa9.57□□□□□ -0.88
HDAC4-213ENST00000496347 SPINK8P0C7L1 97 aa9.56□□□□□ -0.88
HDAC4-213ENST00000496347 LRP2P98164 4655 aa9.55□□□□□ -0.88
HDAC4-213ENST00000496347 LINC00614P0C842 121 aa9.55□□□□□ -0.88
HDAC4-213ENST00000496347 RAB5BP61020 215 aa9.55□□□□□ -0.88
HDAC4-213ENST00000496347 LBHQ53QV2 105 aaPredicted RBP9.55□□□□□ -0.88
HDAC4-213ENST00000496347 NUPR1O60356 82 aa9.54□□□□□ -0.88
HDAC4-213ENST00000496347 URB1-AS1Q96HZ7 61 aa9.54□□□□□ -0.88
HDAC4-213ENST00000496347 IGLV5-39A0A0G2JS06 123 aa9.53□□□□□ -0.88
HDAC4-213ENST00000496347 ATP5LO75964 103 aa9.53□□□□□ -0.88
HDAC4-213ENST00000496347 C22orf24Q9Y442 160 aa9.53□□□□□ -0.88
HDAC4-213ENST00000496347 MRPL55Q7Z7F7 128 aaKnown RBP9.52□□□□□ -0.89
HDAC4-213ENST00000496347 ZNF22P17026 224 aaPredicted RBP9.51□□□□□ -0.89
HDAC4-213ENST00000496347 NDUFA6P56556 154 aa9.51□□□□□ -0.89
HDAC4-213ENST00000496347 PMCHL1Q16048 86 aa9.51□□□□□ -0.89
HDAC4-213ENST00000496347 IGLV1-50A0A075B6I6 118 aa9.5□□□□□ -0.89
HDAC4-213ENST00000496347 SFTA2Q6UW10 78 aa9.5□□□□□ -0.89
HDAC4-213ENST00000496347 YPEL4Q96NS1 127 aa9.5□□□□□ -0.89
HDAC4-213ENST00000496347 IGLV5-37A0A075B6J1 123 aa9.48□□□□□ -0.89
HDAC4-213ENST00000496347 ZNF861PO60384 105 aa9.48□□□□□ -0.89
HDAC4-213ENST00000496347 KRTAP1-4P0C5Y4 121 aa9.48□□□□□ -0.89
HDAC4-213ENST00000496347 CHCHD1Q96BP2 118 aaKnown RBP9.48□□□□□ -0.89
HDAC4-213ENST00000496347 C11orf86A6NJI1 115 aa9.47□□□□□ -0.89
HDAC4-213ENST00000496347 PRR26Q8N8Z3 221 aa9.47□□□□□ -0.89
HDAC4-213ENST00000496347 BCE1O60756 84 aa9.46□□□□□ -0.9
HDAC4-213ENST00000496347 RPL13AP40429 203 aaKnown RBP9.46□□□□□ -0.9
HDAC4-213ENST00000496347 BAGE3Q86Y29 109 aa9.46□□□□□ -0.9
HDAC4-213ENST00000496347 NKAPP1Q8N9T2 125 aa9.46□□□□□ -0.9
HDAC4-213ENST00000496347 RPL28P46779 137 aaKnown RBP9.45□□□□□ -0.9
HDAC4-213ENST00000496347 COX17Q14061 63 aa9.45□□□□□ -0.9
HDAC4-213ENST00000496347 ERG28Q9UKR5 140 aa9.45□□□□□ -0.9
HDAC4-213ENST00000496347 TMEM170BQ5T4T1 132 aa9.44□□□□□ -0.9
HDAC4-213ENST00000496347 LINC00167Q96N53 147 aa9.44□□□□□ -0.9
HDAC4-213ENST00000496347 TRAV12-1A0A0B4J245 112 aa9.43□□□□□ -0.9
HDAC4-213ENST00000496347 PFN2P35080 140 aa9.43□□□□□ -0.9
HDAC4-213ENST00000496347 IFI27L1Q96BM0 104 aa9.43□□□□□ -0.9
HDAC4-213ENST00000496347 CHTOPQ9Y3Y2 248 aaKnown RBP9.43□□□□□ -0.9
HDAC4-213ENST00000496347 RPL37AP8A6NKH3 93 aa9.42□□□□□ -0.9
HDAC4-213ENST00000496347 CBLN2Q8IUK8 224 aa9.42□□□□□ -0.9
HDAC4-213ENST00000496347 SND1-IT1Q9HBX3 110 aa9.42□□□□□ -0.9
HDAC4-213ENST00000496347 GAGE10A6NGK3 116 aa9.41□□□□□ -0.9
HDAC4-213ENST00000496347 ZNF625Q96I27 306 aaPredicted RBP9.41□□□□□ -0.9
HDAC4-213ENST00000496347 HSBP1O75506 76 aa9.4□□□□□ -0.9
HDAC4-213ENST00000496347 VPREB1P12018 145 aa9.39□□□□□ -0.91
HDAC4-213ENST00000496347 RPL24P83731 157 aaKnown RBP9.39□□□□□ -0.91
HDAC4-213ENST00000496347 TMEM223A0PJW6 202 aa9.38□□□□□ -0.91
HDAC4-213ENST00000496347 KRTAP13-1Q8IUC0 172 aa9.38□□□□□ -0.91
HDAC4-213ENST00000496347 UBE2AP49459 152 aa9.37□□□□□ -0.91
HDAC4-213ENST00000496347 IGKV2-28A0A075B6P5 120 aa9.36□□□□□ -0.91
HDAC4-213ENST00000496347 IGKV2D-28P01615 120 aa9.36□□□□□ -0.91
HDAC4-213ENST00000496347 TRGC2P03986 189 aa9.35□□□□□ -0.91
HDAC4-213ENST00000496347 SCO1O75880 301 aa9.34□□□□□ -0.91
HDAC4-213ENST00000496347 FAM19A2Q8N3H0 131 aa9.34□□□□□ -0.91
HDAC4-213ENST00000496347 CRYGAP11844 174 aa9.33□□□□□ -0.92
HDAC4-213ENST00000496347 LINC00158P58513 81 aa9.33□□□□□ -0.92
HDAC4-213ENST00000496347 TMEM126AQ9H061 195 aa9.33□□□□□ -0.92
HDAC4-213ENST00000496347 RNF213Q63HN8 5207 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms