RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 M0QXV9 152 aa11.56□□□□□ -0.56
CCDC88B-210ENST00000494566 PAX4O43316 350 aa11.56□□□□□ -0.56
CCDC88B-210ENST00000494566 CRPP02741 224 aa11.56□□□□□ -0.56
CCDC88B-210ENST00000494566 C14orf132Q9NPU4 83 aa11.56□□□□□ -0.56
CCDC88B-210ENST00000494566 FAM110AQ9BQ89 295 aa11.55□□□□□ -0.56
CCDC88B-210ENST00000494566 TIMM17BO60830 172 aa11.54□□□□□ -0.56
CCDC88B-210ENST00000494566 COX7B2Q8TF08 81 aa11.54□□□□□ -0.56
CCDC88B-210ENST00000494566 TRBV6-8A0A0A6YYG3 113 aa11.54□□□□□ -0.56
CCDC88B-210ENST00000494566 IGKV3D-7A0A0C4DH55 119 aa11.54□□□□□ -0.56
CCDC88B-210ENST00000494566 IGKV2-28A0A075B6P5 120 aa11.53□□□□□ -0.56
CCDC88B-210ENST00000494566 IGKV2D-28P01615 120 aa11.53□□□□□ -0.56
CCDC88B-210ENST00000494566 SMIM11BQ8TCY0 68 aa11.53□□□□□ -0.56
CCDC88B-210ENST00000494566 C22orf24Q9Y442 160 aa11.53□□□□□ -0.56
CCDC88B-210ENST00000494566 SHISA2Q6UWI4 295 aa11.53□□□□□ -0.56
CCDC88B-210ENST00000494566 Q8N3U1 123 aa11.53□□□□□ -0.56
CCDC88B-210ENST00000494566 IGLV10-54A0A075B6I4 117 aa11.52□□□□□ -0.57
CCDC88B-210ENST00000494566 GYPEP15421 78 aa11.52□□□□□ -0.57
CCDC88B-210ENST00000494566 SDIM1Q6ZPB5 146 aa11.52□□□□□ -0.57
CCDC88B-210ENST00000494566 KLK5Q9Y337 293 aaPredicted RBP11.52□□□□□ -0.57
CCDC88B-210ENST00000494566 NCR3O14931 201 aa11.52□□□□□ -0.57
CCDC88B-210ENST00000494566 LECT2O14960 151 aa11.51□□□□□ -0.57
CCDC88B-210ENST00000494566 DEFB135Q30KP9 77 aa11.51□□□□□ -0.57
CCDC88B-210ENST00000494566 DNAL4O96015 105 aa11.51□□□□□ -0.57
CCDC88B-210ENST00000494566 X6R8D5 127 aa11.51□□□□□ -0.57
CCDC88B-210ENST00000494566 CCL18P55774 89 aa11.5□□□□□ -0.57
CCDC88B-210ENST00000494566 FAM19A3Q7Z5A8 133 aa11.5□□□□□ -0.57
CCDC88B-210ENST00000494566 FAM222AQ5U5X8 452 aa11.48□□□□□ -0.57
CCDC88B-210ENST00000494566 LINC00526Q96FQ7 95 aa11.48□□□□□ -0.57
CCDC88B-210ENST00000494566 A0A087WVE0 104 aa11.48□□□□□ -0.57
CCDC88B-210ENST00000494566 MALP21145 153 aa11.48□□□□□ -0.57
CCDC88B-210ENST00000494566 HERV-K104P63124 156 aa11.48□□□□□ -0.57
CCDC88B-210ENST00000494566 C6orf226Q5I0X4 101 aa11.48□□□□□ -0.57
CCDC88B-210ENST00000494566 C9orf116Q5BN46 136 aaPredicted RBP11.46□□□□□ -0.57
CCDC88B-210ENST00000494566 PKD1L1Q8TDX9 2849 aa11.46□□□□□ -0.57
CCDC88B-210ENST00000494566 Q6Q795 121 aa11.45□□□□□ -0.58
CCDC88B-210ENST00000494566 FLNBO75369 2602 aaKnown RBP11.45□□□□□ -0.58
CCDC88B-210ENST00000494566 IGHV3OR16-9A0A0B4J2B5 98 aa11.45□□□□□ -0.58
CCDC88B-210ENST00000494566 DEFB121Q5J5C9 76 aa11.44□□□□□ -0.58
CCDC88B-210ENST00000494566 WFDC9Q8NEX5 89 aa11.44□□□□□ -0.58
CCDC88B-210ENST00000494566 KIR2DL5BQ8NHK3 375 aa11.44□□□□□ -0.58
CCDC88B-210ENST00000494566 TRAV13-2A0A0B4J235 113 aa11.43□□□□□ -0.58
CCDC88B-210ENST00000494566 LINC00959A0A1B0GUT2 108 aa11.43□□□□□ -0.58
CCDC88B-210ENST00000494566 C9orf153Q5TBE3 101 aa11.43□□□□□ -0.58
CCDC88B-210ENST00000494566 FAM240AA0A1B0GVK7 77 aa11.42□□□□□ -0.58
CCDC88B-210ENST00000494566 TRACP01848 142 aa11.42□□□□□ -0.58
CCDC88B-210ENST00000494566 HTN3P15516 51 aa11.41□□□□□ -0.58
CCDC88B-210ENST00000494566 LINC01600Q96MT4 127 aa11.41□□□□□ -0.58
CCDC88B-210ENST00000494566 CELA1Q9UNI1 258 aa11.41□□□□□ -0.58
CCDC88B-210ENST00000494566 ANK2Q01484 3957 aa11.41□□□□□ -0.58
CCDC88B-210ENST00000494566 TRBV7-7A0A0K0K1E9 115 aa11.41□□□□□ -0.58
CCDC88B-210ENST00000494566 MRPL23Q16540 153 aaKnown RBP11.41□□□□□ -0.58
CCDC88B-210ENST00000494566 PRO0255Q9UI72 69 aa11.41□□□□□ -0.58
CCDC88B-210ENST00000494566 C9orf66Q5T8R8 295 aa11.4□□□□□ -0.58
CCDC88B-210ENST00000494566 LINC00612Q8N6U2 182 aa11.4□□□□□ -0.58
CCDC88B-210ENST00000494566 IGHV4-28A0A0C4DH34 117 aa11.4□□□□□ -0.58
CCDC88B-210ENST00000494566 LINC00643Q86TS7 51 aa11.4□□□□□ -0.58
CCDC88B-210ENST00000494566 COPS9Q8WXC6 57 aa11.4□□□□□ -0.58
CCDC88B-210ENST00000494566 LINC00846Q9NV44 126 aa11.4□□□□□ -0.58
CCDC88B-210ENST00000494566 RPL28P46779 137 aaKnown RBP11.39□□□□□ -0.59
CCDC88B-210ENST00000494566 F8P00451 2351 aa11.39□□□□□ -0.59
CCDC88B-210ENST00000494566 A0A087WZ39 114 aa11.39□□□□□ -0.59
CCDC88B-210ENST00000494566 LOC107984640A0A0U1RRK4 108 aa11.38□□□□□ -0.59
CCDC88B-210ENST00000494566 HIST1H4AP62805 103 aaKnown RBP11.38□□□□□ -0.59
CCDC88B-210ENST00000494566 LINC00269Q8N2A0 174 aa11.38□□□□□ -0.59
CCDC88B-210ENST00000494566 STAB1Q9NY15 2570 aa11.37□□□□□ -0.59
CCDC88B-210ENST00000494566 CXCL5P42830 114 aa11.37□□□□□ -0.59
CCDC88B-210ENST00000494566 CYSTM1Q9H1C7 97 aa11.37□□□□□ -0.59
CCDC88B-210ENST00000494566 DAD1P61803 113 aa11.35□□□□□ -0.59
CCDC88B-210ENST00000494566 hADV29S1A0JD25 119 aa11.34□□□□□ -0.59
CCDC88B-210ENST00000494566 ACYP1P07311 99 aa11.34□□□□□ -0.59
CCDC88B-210ENST00000494566 INAFM2P0DMQ5 153 aa11.34□□□□□ -0.59
CCDC88B-210ENST00000494566 PPDPFQ9H3Y8 114 aa11.34□□□□□ -0.59
CCDC88B-210ENST00000494566 SMIM9A6NGZ8 99 aa11.33□□□□□ -0.6
CCDC88B-210ENST00000494566 ANGP03950 147 aaKnown RBP11.33□□□□□ -0.6
CCDC88B-210ENST00000494566 SS18Q15532 418 aa11.33□□□□□ -0.6
CCDC88B-210ENST00000494566 C6orf223Q8N319 242 aa11.33□□□□□ -0.6
CCDC88B-210ENST00000494566 FBN1P35555 2871 aaKnown RBP11.32□□□□□ -0.6
CCDC88B-210ENST00000494566 LYRM9A8MSI8 78 aa11.32□□□□□ -0.6
CCDC88B-210ENST00000494566 TENM3Q9P273 2699 aa11.31□□□□□ -0.6
CCDC88B-210ENST00000494566 A0A1B0GX51 115 aa11.31□□□□□ -0.6
CCDC88B-210ENST00000494566 Q8NDZ9 215 aa11.31□□□□□ -0.6
CCDC88B-210ENST00000494566 IBA57-AS1B1ANH7 110 aa11.31□□□□□ -0.6
CCDC88B-210ENST00000494566 APOC4P55056 127 aa11.31□□□□□ -0.6
CCDC88B-210ENST00000494566 C3orf22Q8N5N4 141 aa11.31□□□□□ -0.6
CCDC88B-210ENST00000494566 Q8NAQ8 132 aa11.31□□□□□ -0.6
CCDC88B-210ENST00000494566 IGHV4-30-4P0DP06 118 aa11.3□□□□□ -0.6
CCDC88B-210ENST00000494566 A0A1B0GUV1 79 aa11.3□□□□□ -0.6
CCDC88B-210ENST00000494566 CFAP161Q6P656 301 aa11.29□□□□□ -0.6
CCDC88B-210ENST00000494566 MAST4O15021 2626 aa11.29□□□□□ -0.6
CCDC88B-210ENST00000494566 CHCHD10Q8WYQ3 142 aaPredicted RBP11.29□□□□□ -0.6
CCDC88B-210ENST00000494566 RETNQ9HD89 108 aa11.28□□□□□ -0.6
CCDC88B-210ENST00000494566 NOTCH1P46531 2555 aa11.28□□□□□ -0.6
CCDC88B-210ENST00000494566 REG3AQ06141 175 aa11.28□□□□□ -0.6
CCDC88B-210ENST00000494566 OXLD1Q5BKU9 147 aa11.28□□□□□ -0.6
CCDC88B-210ENST00000494566 C6orf99Q4VX62 202 aa11.27□□□□□ -0.6
CCDC88B-210ENST00000494566 C10orf25Q5T742 122 aa11.27□□□□□ -0.6
CCDC88B-210ENST00000494566 ORMDL1Q9P0S3 153 aa11.27□□□□□ -0.6
CCDC88B-210ENST00000494566 TRAV23DV6A0A075B6W5 121 aa11.26□□□□□ -0.61
CCDC88B-210ENST00000494566 H0YGX0 51 aa11.25□□□□□ -0.61
CCDC88B-210ENST00000494566 NANOS2P60321 138 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms