RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 SYS1-DBNDD2H3BUS1 97 aa0.2□□□□□ -2.38
RFC4-213ENST00000489028 FAUP35544 74 aaKnown RBP0.2□□□□□ -2.38
RFC4-213ENST00000489028 ASIPP42127 132 aa0.2□□□□□ -2.38
RFC4-213ENST00000489028 USMG5Q96IX5 58 aa0.2□□□□□ -2.38
RFC4-213ENST00000489028 HIVEP3Q5T1R4 2406 aa0.2□□□□□ -2.38
RFC4-213ENST00000489028 DMBT1Q9UGM3 2413 aaPredicted RBP0.2□□□□□ -2.38
RFC4-213ENST00000489028 MAST4O15021 2626 aa0.2□□□□□ -2.38
RFC4-213ENST00000489028 ABCC10Q5T3U5 1492 aa0.2□□□□□ -2.38
RFC4-213ENST00000489028 SPTBN1Q01082 2364 aaKnown RBP0.2□□□□□ -2.38
RFC4-213ENST00000489028 PPRC1Q5VV67 1664 aaKnown RBP0.19□□□□□ -2.38
RFC4-213ENST00000489028 PLEKHH2Q8IVE3 1493 aa0.19□□□□□ -2.38
RFC4-213ENST00000489028 GNGT1P63211 74 aa0.19□□□□□ -2.38
RFC4-213ENST00000489028 HMGN3Q15651 99 aa0.19□□□□□ -2.38
RFC4-213ENST00000489028 ZNF720Q7Z2F6 126 aa0.19□□□□□ -2.38
RFC4-213ENST00000489028 PTPN13Q12923 2485 aa0.19□□□□□ -2.38
RFC4-213ENST00000489028 CCNB3Q8WWL7 1395 aa0.19□□□□□ -2.38
RFC4-213ENST00000489028 NUP188Q5SRE5 1749 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 PDCD11Q14690 1871 aaKnown RBP0.18□□□□□ -2.38
RFC4-213ENST00000489028 CCDC141Q6ZP82 1450 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 NLRP1Q9C000 1473 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 TRBV7-7A0A0K0K1E9 115 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 A0A1B0GU69 56 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 H0Y9P7 68 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 K7EQZ3 153 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 ARMS2P0C7Q2 107 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 COX8AP10176 69 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 ALKAL2Q6UX46 152 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 C6orf201Q7Z4U5 140 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 SNHG12Q9BXW3 62 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 ABCA2Q9BZC7 2435 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 A0A0G2JMZ2 1700 aa0.18□□□□□ -2.38
RFC4-213ENST00000489028 XRN1Q8IZH2 1706 aaKnown RBP0.18□□□□□ -2.38
RFC4-213ENST00000489028 UBR5O95071 2799 aaPredicted RBP0.17□□□□□ -2.38
RFC4-213ENST00000489028 GYPAP02724 150 aa0.17□□□□□ -2.38
RFC4-213ENST00000489028 SPRR1BP22528 89 aa0.17□□□□□ -2.38
RFC4-213ENST00000489028 DEFB107AQ8IZN7 70 aa0.17□□□□□ -2.38
RFC4-213ENST00000489028 NCOR1O75376 2440 aa0.17□□□□□ -2.38
RFC4-213ENST00000489028 ETDBQ3ZM63 59 aa0.16□□□□□ -2.38
RFC4-213ENST00000489028 HRNRQ86YZ3 2850 aaPredicted RBP0.16□□□□□ -2.38
RFC4-213ENST00000489028 WNK2Q9Y3S1 2297 aa0.16□□□□□ -2.38
RFC4-213ENST00000489028 ANKRD17O75179 2603 aaKnown RBP0.16□□□□□ -2.38
RFC4-213ENST00000489028 EDC4Q6P2E9 1401 aaKnown RBP0.15□□□□□ -2.39
RFC4-213ENST00000489028 EPRSP07814 1512 aaKnown RBP0.15□□□□□ -2.39
RFC4-213ENST00000489028 SPINK4O60575 86 aa0.15□□□□□ -2.39
RFC4-213ENST00000489028 DNAJC13O75165 2243 aa0.15□□□□□ -2.39
RFC4-213ENST00000489028 PIEZO2Q9H5I5 2752 aa0.15□□□□□ -2.39
RFC4-213ENST00000489028 URB1O60287 2271 aaKnown RBP0.15□□□□□ -2.39
RFC4-213ENST00000489028 GVINP1Q7Z2Y8 2422 aa0.14□□□□□ -2.39
RFC4-213ENST00000489028 D6R8Y8 96 aa0.14□□□□□ -2.39
RFC4-213ENST00000489028 LEPROTL1O95214 131 aa0.14□□□□□ -2.39
RFC4-213ENST00000489028 SMIM11AP58511 58 aa0.14□□□□□ -2.39
RFC4-213ENST00000489028 MUSTN1Q8IVN3 82 aa0.14□□□□□ -2.39
RFC4-213ENST00000489028 Q9H521 79 aa0.14□□□□□ -2.39
RFC4-213ENST00000489028 NRXN1Q9ULB1 1477 aa0.14□□□□□ -2.39
RFC4-213ENST00000489028 TROQ12816 1431 aaPredicted RBP0.13□□□□□ -2.39
RFC4-213ENST00000489028 F8WEM9 126 aa0.13□□□□□ -2.39
RFC4-213ENST00000489028 FXYD6Q9H0Q3 95 aa0.13□□□□□ -2.39
RFC4-213ENST00000489028 CRIPTQ9P021 101 aa0.13□□□□□ -2.39
RFC4-213ENST00000489028 FANCAO15360 1455 aa0.13□□□□□ -2.39
RFC4-213ENST00000489028 IQSEC2Q5JU85 1478 aa0.13□□□□□ -2.39
RFC4-213ENST00000489028 SYNE2Q8WXH0 6885 aaKnown RBP0.13□□□□□ -2.39
RFC4-213ENST00000489028 MARF1Q9Y4F3 1742 aaKnown RBP0.13□□□□□ -2.39
RFC4-213ENST00000489028 KIAA0556O60303 1618 aa0.13□□□□□ -2.39
RFC4-213ENST00000489028 DEFB105AQ8NG35 78 aa0.12□□□□□ -2.39
RFC4-213ENST00000489028 PSENENQ9NZ42 101 aa0.12□□□□□ -2.39
RFC4-213ENST00000489028 KNDC1Q76NI1 1749 aa0.12□□□□□ -2.39
RFC4-213ENST00000489028 CELSR1Q9NYQ6 3014 aa0.12□□□□□ -2.39
RFC4-213ENST00000489028 ATP10BO94823 1461 aa0.11□□□□□ -2.39
RFC4-213ENST00000489028 I3L3M4 83 aa0.11□□□□□ -2.39
RFC4-213ENST00000489028 HIGD1BQ9P298 99 aa0.11□□□□□ -2.39
RFC4-213ENST00000489028 V9GYS6 101 aa0.11□□□□□ -2.39
RFC4-213ENST00000489028 FSIP2Q5CZC0 6907 aa0.11□□□□□ -2.39
RFC4-213ENST00000489028 CHD6Q8TD26 2715 aa0.11□□□□□ -2.39
RFC4-213ENST00000489028 CLTCQ00610 1675 aaKnown RBP0.11□□□□□ -2.39
RFC4-213ENST00000489028 TSC2P49815 1807 aa0.1□□□□□ -2.39
RFC4-213ENST00000489028 TARBP1Q13395 1621 aaKnown RBP0.1□□□□□ -2.39
RFC4-213ENST00000489028 TENM4Q6N022 2769 aa0.1□□□□□ -2.39
RFC4-213ENST00000489028 CUX1P39880 1505 aa0.1□□□□□ -2.39
RFC4-213ENST00000489028 PEA15Q15121 130 aa0.1□□□□□ -2.39
RFC4-213ENST00000489028 SHPRHQ149N8 1683 aa0.1□□□□□ -2.39
RFC4-213ENST00000489028 BAZ1AQ9NRL2 1556 aaPredicted RBP0.1□□□□□ -2.39
RFC4-213ENST00000489028 ANKRD26Q9UPS8 1709 aa0.1□□□□□ -2.39
RFC4-213ENST00000489028 COL7A1Q02388 2944 aa0.1□□□□□ -2.39
RFC4-213ENST00000489028 VWFP04275 2813 aa0.09□□□□□ -2.39
RFC4-213ENST00000489028 SPTA1P02549 2419 aa0.09□□□□□ -2.39
RFC4-213ENST00000489028 CACNA1AO00555 2505 aa0.09□□□□□ -2.39
RFC4-213ENST00000489028 CPSF4LA6NMK7 179 aaKnown RBP0.09□□□□□ -2.4
RFC4-213ENST00000489028 PYY3Q5JQD4 70 aa0.09□□□□□ -2.4
RFC4-213ENST00000489028 C20orf78Q9BR46 151 aa0.09□□□□□ -2.4
RFC4-213ENST00000489028 CSPG4Q6UVK1 2322 aa0.09□□□□□ -2.4
RFC4-213ENST00000489028 AKAP12Q02952 1782 aa0.09□□□□□ -2.4
RFC4-213ENST00000489028 PAPPA2Q9BXP8 1791 aa0.09□□□□□ -2.4
RFC4-213ENST00000489028 HUWE1Q7Z6Z7 4374 aaKnown RBP0.08□□□□□ -2.4
RFC4-213ENST00000489028 LRRC37AA6NMS7 1700 aa0.08□□□□□ -2.4
RFC4-213ENST00000489028 SAMD9Q5K651 1589 aa0.08□□□□□ -2.4
RFC4-213ENST00000489028 HMGN2P05204 90 aaKnown RBP0.08□□□□□ -2.4
RFC4-213ENST00000489028 IGLC2P0DOY2 106 aa0.08□□□□□ -2.4
RFC4-213ENST00000489028 IGLC3P0DOY3 106 aa0.08□□□□□ -2.4
RFC4-213ENST00000489028 SPRR2GQ9BYE4 73 aa0.08□□□□□ -2.4
RFC4-213ENST00000489028 APLNQ9ULZ1 77 aa0.08□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 130.9 ms