RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	HERVK_113	P63121	156 aa		10.95	□□□□□ -0.66
HDAC6-231	ENST00000488905	PNRC1	Q12796	327 aa	Predicted RBP	10.95	□□□□□ -0.66
HDAC6-231	ENST00000488905	LBH	Q53QV2	105 aa	Predicted RBP	10.95	□□□□□ -0.66
HDAC6-231	ENST00000488905	CDKN2A-AS1	Q9UH64	79 aa		10.95	□□□□□ -0.66
HDAC6-231	ENST00000488905		F8VRH5	84 aa		10.94	□□□□□ -0.66
HDAC6-231	ENST00000488905	SEC11A	P67812	179 aa		10.94	□□□□□ -0.66
HDAC6-231	ENST00000488905	PAPPA-AS1	Q5QFB9	102 aa		10.94	□□□□□ -0.66
HDAC6-231	ENST00000488905	ANAPC16	Q96DE5	110 aa		10.94	□□□□□ -0.66
HDAC6-231	ENST00000488905	CTDSP1	Q9GZU7	261 aa		10.94	□□□□□ -0.66
HDAC6-231	ENST00000488905	MT-ND4L	P03901	98 aa		10.93	□□□□□ -0.66
HDAC6-231	ENST00000488905	NXT2	Q9NPJ8	142 aa	Known RBP	10.93	□□□□□ -0.66
HDAC6-231	ENST00000488905	TP73-AS1	Q9UF72	201 aa		10.93	□□□□□ -0.66
HDAC6-231	ENST00000488905	MRPL55	Q7Z7F7	128 aa	Known RBP	10.92	□□□□□ -0.66
HDAC6-231	ENST00000488905	TIMM17A	Q99595	171 aa		10.92	□□□□□ -0.66
HDAC6-231	ENST00000488905	GEMIN7	Q9H840	131 aa	Known RBP	10.92	□□□□□ -0.66
HDAC6-231	ENST00000488905	CXCL5	P42830	114 aa		10.91	□□□□□ -0.66
HDAC6-231	ENST00000488905		A0A087X002	238 aa		10.89	□□□□□ -0.67
HDAC6-231	ENST00000488905	BCE1	O60756	84 aa		10.89	□□□□□ -0.67
HDAC6-231	ENST00000488905	G0S2	P27469	103 aa		10.89	□□□□□ -0.67
HDAC6-231	ENST00000488905	RPL28	P46779	137 aa	Known RBP	10.89	□□□□□ -0.67
HDAC6-231	ENST00000488905	TOMM6	Q96B49	74 aa		10.89	□□□□□ -0.67
HDAC6-231	ENST00000488905	SMIM1	B2RUZ4	78 aa		10.88	□□□□□ -0.67
HDAC6-231	ENST00000488905	TSPAN13	O95857	204 aa		10.88	□□□□□ -0.67
HDAC6-231	ENST00000488905	CRYGA	P11844	174 aa		10.85	□□□□□ -0.67
HDAC6-231	ENST00000488905	ERAS	Q7Z444	233 aa		10.85	□□□□□ -0.67
HDAC6-231	ENST00000488905	COX7B2	Q8TF08	81 aa		10.85	□□□□□ -0.67
HDAC6-231	ENST00000488905	LINC00167	Q96N53	147 aa		10.85	□□□□□ -0.67
HDAC6-231	ENST00000488905	IGLV5-45	A0A087WSX0	123 aa		10.84	□□□□□ -0.67
HDAC6-231	ENST00000488905	TINCR	A0A1B0GVN0	87 aa		10.84	□□□□□ -0.67
HDAC6-231	ENST00000488905	RPL37AP8	A6NKH3	93 aa		10.84	□□□□□ -0.67
HDAC6-231	ENST00000488905	PDZD11	Q5EBL8	140 aa		10.84	□□□□□ -0.67
HDAC6-231	ENST00000488905	TYMSOS	Q8TAI1	123 aa		10.84	□□□□□ -0.67
HDAC6-231	ENST00000488905	SCGB3A1	Q96QR1	104 aa		10.84	□□□□□ -0.67
HDAC6-231	ENST00000488905	KIAA1644	Q3SXP7	199 aa		10.83	□□□□□ -0.68
HDAC6-231	ENST00000488905		A0A0U1RQV1	116 aa		10.82	□□□□□ -0.68
HDAC6-231	ENST00000488905	GAGE10	A6NGK3	116 aa		10.82	□□□□□ -0.68
HDAC6-231	ENST00000488905	ADCYAP1	P18509	176 aa		10.82	□□□□□ -0.68
HDAC6-231	ENST00000488905	IGLV5-37	A0A075B6J1	123 aa		10.81	□□□□□ -0.68
HDAC6-231	ENST00000488905	KRTAP13-1	Q8IUC0	172 aa		10.8	□□□□□ -0.68
HDAC6-231	ENST00000488905	NKAPP1	Q8N9T2	125 aa		10.8	□□□□□ -0.68
HDAC6-231	ENST00000488905	SPINK8	P0C7L1	97 aa		10.79	□□□□□ -0.68
HDAC6-231	ENST00000488905	RAB14	P61106	215 aa		10.79	□□□□□ -0.68
HDAC6-231	ENST00000488905	ANAPC11	Q9NYG5	84 aa		10.79	□□□□□ -0.68
HDAC6-231	ENST00000488905	FAT4	Q6V0I7	4981 aa		10.78	□□□□□ -0.68
HDAC6-231	ENST00000488905	LINC01549	A6NIU2	74 aa		10.78	□□□□□ -0.68
HDAC6-231	ENST00000488905	UBE2A	P49459	152 aa		10.78	□□□□□ -0.68
HDAC6-231	ENST00000488905	RAB5B	P61020	215 aa		10.78	□□□□□ -0.68
HDAC6-231	ENST00000488905	KRTAP13-2	Q52LG2	175 aa		10.78	□□□□□ -0.68
HDAC6-231	ENST00000488905	LINC01546	A6NGU7	62 aa		10.77	□□□□□ -0.69
HDAC6-231	ENST00000488905	CST9L	Q9H4G1	147 aa		10.77	□□□□□ -0.69
HDAC6-231	ENST00000488905	MUC17	Q685J3	4493 aa		10.77	□□□□□ -0.69
HDAC6-231	ENST00000488905	TRAV9-1	A0A075B6T8	112 aa		10.76	□□□□□ -0.69
HDAC6-231	ENST00000488905	IGKV2-28	A0A075B6P5	120 aa		10.75	□□□□□ -0.69
HDAC6-231	ENST00000488905	ATP5L	O75964	103 aa		10.75	□□□□□ -0.69
HDAC6-231	ENST00000488905	IGKV2D-28	P01615	120 aa		10.75	□□□□□ -0.69
HDAC6-231	ENST00000488905	PMVK	Q15126	192 aa		10.75	□□□□□ -0.69
HDAC6-231	ENST00000488905	FAM229B	Q4G0N7	80 aa		10.75	□□□□□ -0.69
HDAC6-231	ENST00000488905		H3BRM9	83 aa		10.74	□□□□□ -0.69
HDAC6-231	ENST00000488905	SCO1	O75880	301 aa		10.74	□□□□□ -0.69
HDAC6-231	ENST00000488905	MRPL18	Q9H0U6	180 aa	Known RBP	10.74	□□□□□ -0.69
HDAC6-231	ENST00000488905	LINC00304	Q8N9R0	145 aa		10.73	□□□□□ -0.69
HDAC6-231	ENST00000488905	RETNLB	Q9BQ08	111 aa		10.73	□□□□□ -0.69
HDAC6-231	ENST00000488905	KRTAP3-3	Q9BYR6	98 aa		10.73	□□□□□ -0.69
HDAC6-231	ENST00000488905	KRTAP3-2	Q9BYR7	98 aa		10.73	□□□□□ -0.69
HDAC6-231	ENST00000488905	GNB1L	Q9BYB4	327 aa		10.72	□□□□□ -0.69
HDAC6-231	ENST00000488905	PFN2	P35080	140 aa		10.71	□□□□□ -0.69
HDAC6-231	ENST00000488905	PRLH	P81277	87 aa		10.71	□□□□□ -0.69
HDAC6-231	ENST00000488905	FA2H	Q7L5A8	372 aa		10.71	□□□□□ -0.69
HDAC6-231	ENST00000488905	IGLV5-39	A0A0G2JS06	123 aa		10.7	□□□□□ -0.7
HDAC6-231	ENST00000488905	IGLC3	P0DOY3	106 aa		10.7	□□□□□ -0.7
HDAC6-231	ENST00000488905	CLLU1	Q5K131	121 aa		10.7	□□□□□ -0.7
HDAC6-231	ENST00000488905	SMCO4	Q9NRQ5	59 aa		10.7	□□□□□ -0.7
HDAC6-231	ENST00000488905	VPREB1	P12018	145 aa		10.69	□□□□□ -0.7
HDAC6-231	ENST00000488905	S100P	P25815	95 aa		10.69	□□□□□ -0.7
HDAC6-231	ENST00000488905	IGKV2D-26	A0A0A0MRZ7	120 aa		10.68	□□□□□ -0.7
HDAC6-231	ENST00000488905	FAM19A1	Q7Z5A9	133 aa		10.68	□□□□□ -0.7
HDAC6-231	ENST00000488905	TMEM126A	Q9H061	195 aa		10.68	□□□□□ -0.7
HDAC6-231	ENST00000488905	SND1-IT1	Q9HBX3	110 aa		10.68	□□□□□ -0.7
HDAC6-231	ENST00000488905	TMEM218	A2RU14	115 aa		10.67	□□□□□ -0.7
HDAC6-231	ENST00000488905	TMEM238	C9JI98	176 aa		10.67	□□□□□ -0.7
HDAC6-231	ENST00000488905	ZNF22	P17026	224 aa	Predicted RBP	10.67	□□□□□ -0.7
HDAC6-231	ENST00000488905	UQCC3	Q6UW78	93 aa		10.67	□□□□□ -0.7
HDAC6-231	ENST00000488905	ERG28	Q9UKR5	140 aa		10.67	□□□□□ -0.7
HDAC6-231	ENST00000488905	TPRXL	Q17RH7	258 aa		10.66	□□□□□ -0.7
HDAC6-231	ENST00000488905	COX19	Q49B96	90 aa		10.66	□□□□□ -0.7
HDAC6-231	ENST00000488905	LCE2A	Q5TA79	106 aa	Predicted RBP	10.65	□□□□□ -0.7
HDAC6-231	ENST00000488905	KRTAP9-2	Q9BYQ4	174 aa		10.65	□□□□□ -0.7
HDAC6-231	ENST00000488905		A0A096LNJ9	63 aa		10.64	□□□□□ -0.71
HDAC6-231	ENST00000488905		M0R378	163 aa		10.64	□□□□□ -0.71
HDAC6-231	ENST00000488905	NDUFA6	P56556	154 aa		10.64	□□□□□ -0.71
HDAC6-231	ENST00000488905	RPL24	P83731	157 aa	Known RBP	10.64	□□□□□ -0.71
HDAC6-231	ENST00000488905	FABP9	Q0Z7S8	132 aa		10.64	□□□□□ -0.71
HDAC6-231	ENST00000488905	COX17	Q14061	63 aa		10.64	□□□□□ -0.71
HDAC6-231	ENST00000488905	CDIP1	Q9H305	208 aa		10.64	□□□□□ -0.71
HDAC6-231	ENST00000488905	CTAG1A	P78358	180 aa		10.63	□□□□□ -0.71
HDAC6-231	ENST00000488905		Q8NDZ9	215 aa		10.63	□□□□□ -0.71
HDAC6-231	ENST00000488905	ZNF625	Q96I27	306 aa	Predicted RBP	10.62	□□□□□ -0.71
HDAC6-231	ENST00000488905	SEC11C	Q9BY50	192 aa		10.62	□□□□□ -0.71
HDAC6-231	ENST00000488905	IGLV7-46	A0A075B6I9	117 aa		10.61	□□□□□ -0.71
HDAC6-231	ENST00000488905	PLEKHB2	Q96CS7	222 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms