RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 MT-ATP8P03928 68 aa-0.11□□□□□ -2.43
PTPN4-212ENST00000488896 C14orf144Q96I85 54 aa-0.11□□□□□ -2.43
PTPN4-212ENST00000488896 GVINP1Q7Z2Y8 2422 aa-0.11□□□□□ -2.43
PTPN4-212ENST00000488896 NLRP1Q9C000 1473 aa-0.11□□□□□ -2.43
PTPN4-212ENST00000488896 EHBP1L1Q8N3D4 1523 aa-0.12□□□□□ -2.43
PTPN4-212ENST00000488896 D6R8Y8 96 aa-0.12□□□□□ -2.43
PTPN4-212ENST00000488896 H0Y9P7 68 aa-0.12□□□□□ -2.43
PTPN4-212ENST00000488896 M0R2T5 61 aa-0.12□□□□□ -2.43
PTPN4-212ENST00000488896 LEPROTL1O95214 131 aa-0.12□□□□□ -2.43
PTPN4-212ENST00000488896 LINC00032P0C843 101 aa-0.12□□□□□ -2.43
PTPN4-212ENST00000488896 RBP2P50120 134 aa-0.12□□□□□ -2.43
PTPN4-212ENST00000488896 MUSTN1Q8IVN3 82 aa-0.12□□□□□ -2.43
PTPN4-212ENST00000488896 NRKQ7Z2Y5 1582 aa-0.12□□□□□ -2.43
PTPN4-212ENST00000488896 MYOM1P52179 1685 aa-0.12□□□□□ -2.43
PTPN4-212ENST00000488896 ABCC5O15440 1437 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 MAPKBP1O60336 1514 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 SPTA1P02549 2419 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 ARHGEF5Q12774 1597 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 PLEKHH2Q8IVE3 1493 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 UQCRHLA0A096LP55 91 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 ATOX1O00244 68 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 H1FX-AS1Q4G0G2 97 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 NCMAPQ5T1S8 102 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 ZNF720Q7Z2F6 126 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 FMN2Q9NZ56 1722 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 TOP2BQ02880 1626 aa-0.13□□□□□ -2.43
PTPN4-212ENST00000488896 EIF4G3O43432 1585 aaKnown RBP-0.14□□□□□ -2.43
PTPN4-212ENST00000488896 ANKRD36A6QL64 1941 aa-0.14□□□□□ -2.43
PTPN4-212ENST00000488896 CNOT1A5YKK6 2376 aaKnown RBP-0.14□□□□□ -2.43
PTPN4-212ENST00000488896 TRBV7-7A0A0K0K1E9 115 aa-0.14□□□□□ -2.43
PTPN4-212ENST00000488896 MPC2O95563 127 aa-0.14□□□□□ -2.43
PTPN4-212ENST00000488896 SERP2Q8N6R1 65 aa-0.14□□□□□ -2.43
PTPN4-212ENST00000488896 DPY30Q9C005 99 aa-0.14□□□□□ -2.43
PTPN4-212ENST00000488896 PSENENQ9NZ42 101 aa-0.14□□□□□ -2.43
PTPN4-212ENST00000488896 CACNA1AO00555 2505 aa-0.14□□□□□ -2.43
PTPN4-212ENST00000488896 CHD8Q9HCK8 2581 aa-0.14□□□□□ -2.43
PTPN4-212ENST00000488896 KNDC1Q76NI1 1749 aa-0.15□□□□□ -2.43
PTPN4-212ENST00000488896 FLNCQ14315 2725 aa-0.15□□□□□ -2.43
PTPN4-212ENST00000488896 SPTY2D1-AS1A0A0U1RR47 76 aa-0.15□□□□□ -2.43
PTPN4-212ENST00000488896 F8WEM9 126 aa-0.15□□□□□ -2.43
PTPN4-212ENST00000488896 M0R143 59 aa-0.15□□□□□ -2.43
PTPN4-212ENST00000488896 DEFB135Q30KP9 77 aa-0.15□□□□□ -2.43
PTPN4-212ENST00000488896 DEFB112Q30KQ8 113 aa-0.15□□□□□ -2.43
PTPN4-212ENST00000488896 KRTAP6-1Q3LI64 71 aa-0.15□□□□□ -2.43
PTPN4-212ENST00000488896 ETDBQ3ZM63 59 aa-0.15□□□□□ -2.43
PTPN4-212ENST00000488896 STAB1Q9NY15 2570 aa-0.15□□□□□ -2.43
PTPN4-212ENST00000488896 CCDC141Q6ZP82 1450 aa-0.16□□□□□ -2.43
PTPN4-212ENST00000488896 MLH3Q9UHC1 1453 aa-0.16□□□□□ -2.43
PTPN4-212ENST00000488896 TULP4Q9NRJ4 1543 aa-0.16□□□□□ -2.43
PTPN4-212ENST00000488896 SCN7AQ01118 1682 aa-0.16□□□□□ -2.44
PTPN4-212ENST00000488896 H7BZZ5 65 aa-0.16□□□□□ -2.44
PTPN4-212ENST00000488896 ACBD7Q8N6N7 88 aa-0.16□□□□□ -2.44
PTPN4-212ENST00000488896 CC2D2AQ9P2K1 1620 aa-0.16□□□□□ -2.44
PTPN4-212ENST00000488896 ANKRD36BQ8N2N9 1353 aa-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 ACANP16112 2415 aa-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 IGLC2P0DOY2 106 aa-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 IGLC3P0DOY3 106 aa-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 SPHKAPQ2M3C7 1700 aa-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 ALKAL2Q6UX46 152 aa-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 MRPL34Q9BQ48 92 aaKnown RBP-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 CDKN2A-AS1Q9UH64 79 aa-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 VWFP04275 2813 aa-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 CHD9Q3L8U1 2897 aa-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 CHD6Q8TD26 2715 aa-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 EP300Q09472 2414 aaPredicted RBP-0.17□□□□□ -2.44
PTPN4-212ENST00000488896 SMIM11AP58511 58 aa-0.18□□□□□ -2.44
PTPN4-212ENST00000488896 HMGN3Q15651 99 aa-0.18□□□□□ -2.44
PTPN4-212ENST00000488896 TENM4Q6N022 2769 aa-0.18□□□□□ -2.44
PTPN4-212ENST00000488896 PIEZO2Q9H5I5 2752 aa-0.18□□□□□ -2.44
PTPN4-212ENST00000488896 FAM135AQ9P2D6 1515 aa-0.18□□□□□ -2.44
PTPN4-212ENST00000488896 A0A0G2JMZ2 1700 aa-0.18□□□□□ -2.44
PTPN4-212ENST00000488896 XRN1Q8IZH2 1706 aaKnown RBP-0.18□□□□□ -2.44
PTPN4-212ENST00000488896 SHROOM2Q13796 1616 aa-0.19□□□□□ -2.44
PTPN4-212ENST00000488896 CCL22O00626 93 aa-0.19□□□□□ -2.44
PTPN4-212ENST00000488896 SPRR2BP35325 72 aa-0.19□□□□□ -2.44
PTPN4-212ENST00000488896 LELP1Q5T871 98 aa-0.19□□□□□ -2.44
PTPN4-212ENST00000488896 WFDC13Q8IUB5 93 aa-0.19□□□□□ -2.44
PTPN4-212ENST00000488896 Q9H521 79 aa-0.19□□□□□ -2.44
PTPN4-212ENST00000488896 HIGD1BQ9P298 99 aa-0.19□□□□□ -2.44
PTPN4-212ENST00000488896 NUP188Q5SRE5 1749 aa-0.19□□□□□ -2.44
PTPN4-212ENST00000488896 ABCA3Q99758 1704 aa-0.19□□□□□ -2.44
PTPN4-212ENST00000488896 MARF1Q9Y4F3 1742 aaKnown RBP-0.19□□□□□ -2.44
PTPN4-212ENST00000488896 KIAA0556O60303 1618 aa-0.2□□□□□ -2.44
PTPN4-212ENST00000488896 CNTLNQ9NXG0 1405 aa-0.2□□□□□ -2.44
PTPN4-212ENST00000488896 UBR3Q6ZT12 1888 aa-0.2□□□□□ -2.44
PTPN4-212ENST00000488896 IQSEC2Q5JU85 1478 aa-0.2□□□□□ -2.44
PTPN4-212ENST00000488896 ANKRD17O75179 2603 aaKnown RBP-0.2□□□□□ -2.44
PTPN4-212ENST00000488896 H0YGG7 62 aa-0.2□□□□□ -2.44
PTPN4-212ENST00000488896 PEA15Q15121 130 aa-0.2□□□□□ -2.44
PTPN4-212ENST00000488896 KRTAP19-7Q3SYF9 63 aa-0.2□□□□□ -2.44
PTPN4-212ENST00000488896 NMSQ5H8A3 153 aa-0.2□□□□□ -2.44
PTPN4-212ENST00000488896 C9orf62Q8N4C0 152 aa-0.2□□□□□ -2.44
PTPN4-212ENST00000488896 MACF1Q9UPN3 7388 aaKnown RBP-0.2□□□□□ -2.44
PTPN4-212ENST00000488896 COL4A6Q14031 1691 aa-0.21□□□□□ -2.44
PTPN4-212ENST00000488896 RAPGEF2Q9Y4G8 1499 aa-0.21□□□□□ -2.44
PTPN4-212ENST00000488896 PKD1L1Q8TDX9 2849 aa-0.21□□□□□ -2.44
PTPN4-212ENST00000488896 HMCN2Q8NDA2 5059 aa-0.21□□□□□ -2.44
PTPN4-212ENST00000488896 ZFYVE16Q7Z3T8 1539 aa-0.21□□□□□ -2.44
PTPN4-212ENST00000488896 GAFA1Q96PS6 74 aa-0.21□□□□□ -2.44
PTPN4-212ENST00000488896 CLIP1P30622 1438 aa-0.21□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms