RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 KRTAP10-11P60412 298 aa7.6□□□□□ -1.19
HLA-DMB-260ENST00000477537 SHISA2Q6UWI4 295 aa7.6□□□□□ -1.19
HLA-DMB-260ENST00000477537 TEN1Q86WV5 123 aa7.6□□□□□ -1.19
HLA-DMB-260ENST00000477537 DNAH3Q8TD57 4116 aa7.6□□□□□ -1.19
HLA-DMB-260ENST00000477537 LINC00269Q8N2A0 174 aa7.6□□□□□ -1.19
HLA-DMB-260ENST00000477537 MIR7-3HGQ8N6C7 128 aa7.6□□□□□ -1.19
HLA-DMB-260ENST00000477537 ANKRD29Q8N6D5 301 aa7.6□□□□□ -1.19
HLA-DMB-260ENST00000477537 LINC00158P58513 81 aa7.59□□□□□ -1.19
HLA-DMB-260ENST00000477537 MRPL23Q16540 153 aaKnown RBP7.59□□□□□ -1.19
HLA-DMB-260ENST00000477537 Q8N3U1 123 aa7.59□□□□□ -1.19
HLA-DMB-260ENST00000477537 PPDPFLQ8WWR9 84 aa7.59□□□□□ -1.19
HLA-DMB-260ENST00000477537 CLEC2BQ92478 149 aa7.59□□□□□ -1.19
HLA-DMB-260ENST00000477537 CARD19Q96LW7 228 aa7.59□□□□□ -1.19
HLA-DMB-260ENST00000477537 C11orf68Q9H3H3 251 aaKnown RBP7.59□□□□□ -1.19
HLA-DMB-260ENST00000477537 PPDPFQ9H3Y8 114 aa7.58□□□□□ -1.2
HLA-DMB-260ENST00000477537 M0QXV9 152 aa7.58□□□□□ -1.2
HLA-DMB-260ENST00000477537 ANGP03950 147 aaKnown RBP7.58□□□□□ -1.2
HLA-DMB-260ENST00000477537 C6orf226Q5I0X4 101 aa7.58□□□□□ -1.2
HLA-DMB-260ENST00000477537 RETNQ9HD89 108 aa7.58□□□□□ -1.2
HLA-DMB-260ENST00000477537 TRBV10-2A0A0K0K1G8 114 aa7.57□□□□□ -1.2
HLA-DMB-260ENST00000477537 IBA57-AS1B1ANH7 110 aa7.57□□□□□ -1.2
HLA-DMB-260ENST00000477537 GAGE12HA6NDE8 117 aa7.56□□□□□ -1.2
HLA-DMB-260ENST00000477537 PFN2P35080 140 aa7.56□□□□□ -1.2
HLA-DMB-260ENST00000477537 REG3AQ06141 175 aa7.56□□□□□ -1.2
HLA-DMB-260ENST00000477537 LINC01561Q8N1V8 128 aa7.56□□□□□ -1.2
HLA-DMB-260ENST00000477537 CHCHD10Q8WYQ3 142 aaPredicted RBP7.56□□□□□ -1.2
HLA-DMB-260ENST00000477537 IGLV10-54A0A075B6I4 117 aa7.56□□□□□ -1.2
HLA-DMB-260ENST00000477537 LST1O00453 97 aa7.56□□□□□ -1.2
HLA-DMB-260ENST00000477537 LELP1Q5T871 98 aa7.56□□□□□ -1.2
HLA-DMB-260ENST00000477537 CD164L2Q6UWJ8 174 aa7.56□□□□□ -1.2
HLA-DMB-260ENST00000477537 Q8IZM0 81 aa7.56□□□□□ -1.2
HLA-DMB-260ENST00000477537 SND1-IT1Q9HBX3 110 aa7.56□□□□□ -1.2
HLA-DMB-260ENST00000477537 COX7A2LO14548 114 aa7.55□□□□□ -1.2
HLA-DMB-260ENST00000477537 CRPP02741 224 aa7.54□□□□□ -1.2
HLA-DMB-260ENST00000477537 CCL18P55774 89 aa7.54□□□□□ -1.2
HLA-DMB-260ENST00000477537 EGFEM1PQ0D2K5 195 aa7.54□□□□□ -1.2
HLA-DMB-260ENST00000477537 C2orf82Q6UX34 121 aa7.54□□□□□ -1.2
HLA-DMB-260ENST00000477537 SPATA25Q9BR10 227 aa7.54□□□□□ -1.2
HLA-DMB-260ENST00000477537 TRAV13-2A0A0B4J235 113 aa7.54□□□□□ -1.2
HLA-DMB-260ENST00000477537 SVIPQ8NHG7 77 aa7.54□□□□□ -1.2
HLA-DMB-260ENST00000477537 NTN5Q8WTR8 489 aaPredicted RBP7.54□□□□□ -1.2
HLA-DMB-260ENST00000477537 LINC01600Q96MT4 127 aa7.54□□□□□ -1.2
HLA-DMB-260ENST00000477537 IGKV2-28A0A075B6P5 120 aa7.53□□□□□ -1.2
HLA-DMB-260ENST00000477537 IGKV2D-28P01615 120 aa7.53□□□□□ -1.2
HLA-DMB-260ENST00000477537 SIGMAR1Q99720 223 aa7.53□□□□□ -1.2
HLA-DMB-260ENST00000477537 MALP21145 153 aa7.52□□□□□ -1.2
HLA-DMB-260ENST00000477537 CKS1BP61024 79 aa7.52□□□□□ -1.2
HLA-DMB-260ENST00000477537 CFAP161Q6P656 301 aa7.52□□□□□ -1.2
HLA-DMB-260ENST00000477537 LINC00337Q8N6G1 96 aa7.52□□□□□ -1.2
HLA-DMB-260ENST00000477537 H3BT86 120 aa7.52□□□□□ -1.21
HLA-DMB-260ENST00000477537 KIAA0087Q14695 138 aa7.52□□□□□ -1.21
HLA-DMB-260ENST00000477537 LYPD5Q6UWN5 251 aa7.52□□□□□ -1.21
HLA-DMB-260ENST00000477537 CDIP1Q9H305 208 aa7.5□□□□□ -1.21
HLA-DMB-260ENST00000477537 KLK12Q9UKR0 248 aa7.5□□□□□ -1.21
HLA-DMB-260ENST00000477537 TEX49A0A1B0GTD5 131 aa7.5□□□□□ -1.21
HLA-DMB-260ENST00000477537 RPL28P46779 137 aaKnown RBP7.5□□□□□ -1.21
HLA-DMB-260ENST00000477537 UBE2WQ96B02 151 aa7.5□□□□□ -1.21
HLA-DMB-260ENST00000477537 CXCL5P42830 114 aa7.49□□□□□ -1.21
HLA-DMB-260ENST00000477537 KPRPQ5T749 579 aaPredicted RBP7.49□□□□□ -1.21
HLA-DMB-260ENST00000477537 Q6ZTC4 211 aa7.49□□□□□ -1.21
HLA-DMB-260ENST00000477537 PRR34Q9NV39 138 aa7.48□□□□□ -1.21
HLA-DMB-260ENST00000477537 H3BNG1 76 aa7.48□□□□□ -1.21
HLA-DMB-260ENST00000477537 KRTAP21-3Q3LHN1 58 aa7.48□□□□□ -1.21
HLA-DMB-260ENST00000477537 ENHOQ6UWT2 76 aa7.48□□□□□ -1.21
HLA-DMB-260ENST00000477537 SMIM11BQ8TCY0 68 aa7.48□□□□□ -1.21
HLA-DMB-260ENST00000477537 FAM218AQ96MZ4 157 aa7.48□□□□□ -1.21
HLA-DMB-260ENST00000477537 A0A0J9YWU9 116 aa7.47□□□□□ -1.21
HLA-DMB-260ENST00000477537 TRACP01848 142 aa7.47□□□□□ -1.21
HLA-DMB-260ENST00000477537 SCGB1A1P11684 91 aa7.47□□□□□ -1.21
HLA-DMB-260ENST00000477537 OR13C6PQ8NH95 151 aa7.47□□□□□ -1.21
HLA-DMB-260ENST00000477537 KLK5Q9Y337 293 aaPredicted RBP7.47□□□□□ -1.21
HLA-DMB-260ENST00000477537 SPAG11BQ08648 103 aa7.46□□□□□ -1.21
HLA-DMB-260ENST00000477537 C9orf116Q5BN46 136 aaPredicted RBP7.46□□□□□ -1.21
HLA-DMB-260ENST00000477537 PRB2P02812 416 aaPredicted RBP7.46□□□□□ -1.22
HLA-DMB-260ENST00000477537 NANOS2P60321 138 aaKnown RBP7.46□□□□□ -1.22
HLA-DMB-260ENST00000477537 COX17Q14061 63 aa7.46□□□□□ -1.22
HLA-DMB-260ENST00000477537 WFDC10BQ8IUB3 73 aa7.46□□□□□ -1.22
HLA-DMB-260ENST00000477537 C6orf223Q8N319 242 aa7.46□□□□□ -1.22
HLA-DMB-260ENST00000477537 LINC00526Q96FQ7 95 aa7.45□□□□□ -1.22
HLA-DMB-260ENST00000477537 PRKDCP78527 4128 aaKnown RBP7.45□□□□□ -1.22
HLA-DMB-260ENST00000477537 TRAV8-4A0A0B4J246 113 aa7.44□□□□□ -1.22
HLA-DMB-260ENST00000477537 C10orf25Q5T742 122 aa7.44□□□□□ -1.22
HLA-DMB-260ENST00000477537 BAALC-AS2P0C853 105 aa7.44□□□□□ -1.22
HLA-DMB-260ENST00000477537 XGP55808 180 aa7.44□□□□□ -1.22
HLA-DMB-260ENST00000477537 UNQ6190/PRO20217Q6UXQ8 127 aa7.44□□□□□ -1.22
HLA-DMB-260ENST00000477537 C11orf45Q8TAV5 145 aa7.44□□□□□ -1.22
HLA-DMB-260ENST00000477537 MT-ATP8P03928 68 aa7.43□□□□□ -1.22
HLA-DMB-260ENST00000477537 PRR3P79522 188 aaKnown RBP7.43□□□□□ -1.22
HLA-DMB-260ENST00000477537 Q9HAA7 133 aa7.43□□□□□ -1.22
HLA-DMB-260ENST00000477537 TENM3Q9P273 2699 aa7.43□□□□□ -1.22
HLA-DMB-260ENST00000477537 A0A087WYN8 130 aa7.42□□□□□ -1.22
HLA-DMB-260ENST00000477537 DEFB131BA0A096LNP1 70 aa7.42□□□□□ -1.22
HLA-DMB-260ENST00000477537 H0YGX0 51 aa7.42□□□□□ -1.22
HLA-DMB-260ENST00000477537 ESRGQ1W209 222 aa7.42□□□□□ -1.22
HLA-DMB-260ENST00000477537 MEGF8Q7Z7M0 2845 aa7.42□□□□□ -1.22
HLA-DMB-260ENST00000477537 NDUFC2O95298 119 aa7.42□□□□□ -1.22
HLA-DMB-260ENST00000477537 DEFB121Q5J5C9 76 aa7.42□□□□□ -1.22
HLA-DMB-260ENST00000477537 NCR3O14931 201 aa7.4□□□□□ -1.23
HLA-DMB-260ENST00000477537 DNAL4O96015 105 aa7.4□□□□□ -1.23
HLA-DMB-260ENST00000477537 DNAH9Q9NYC9 4486 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms