RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 FAM168BA1KXE4 195 aa7.4□□□□□ -1.22
SYNE1-223ENST00000476519 Q8IZM0 81 aa7.4□□□□□ -1.22
SYNE1-223ENST00000476519 RHEBQ15382 184 aa7.39□□□□□ -1.23
SYNE1-223ENST00000476519 COMMD7Q86VX2 200 aa7.39□□□□□ -1.23
SYNE1-223ENST00000476519 TOMM7Q9P0U1 55 aa7.39□□□□□ -1.23
SYNE1-223ENST00000476519 CDKN2A-AS1Q9UH64 79 aa7.39□□□□□ -1.23
SYNE1-223ENST00000476519 CARHSP1Q9Y2V2 147 aaKnown RBP7.39□□□□□ -1.23
SYNE1-223ENST00000476519 IGLV7-43P04211 117 aa7.38□□□□□ -1.23
SYNE1-223ENST00000476519 FABP9Q0Z7S8 132 aa7.38□□□□□ -1.23
SYNE1-223ENST00000476519 FAM19A5Q7Z5A7 132 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-223ENST00000476519 DIRC1Q969H9 104 aa7.38□□□□□ -1.23
SYNE1-223ENST00000476519 TINCRA0A1B0GVN0 87 aa7.37□□□□□ -1.23
SYNE1-223ENST00000476519 ODF1Q14990 250 aa7.37□□□□□ -1.23
SYNE1-223ENST00000476519 C9orf129Q5T035 196 aaKnown RBP7.37□□□□□ -1.23
SYNE1-223ENST00000476519 KRTAP7-1Q8IUC3 87 aa7.37□□□□□ -1.23
SYNE1-223ENST00000476519 MRPL18Q9H0U6 180 aaKnown RBP7.37□□□□□ -1.23
SYNE1-223ENST00000476519 CST9LQ9H4G1 147 aa7.37□□□□□ -1.23
SYNE1-223ENST00000476519 RPS10P5Q9NQ39 176 aa7.37□□□□□ -1.23
SYNE1-223ENST00000476519 F8VRH5 84 aa7.36□□□□□ -1.23
SYNE1-223ENST00000476519 CXCL5P42830 114 aa7.36□□□□□ -1.23
SYNE1-223ENST00000476519 PMVKQ15126 192 aa7.36□□□□□ -1.23
SYNE1-223ENST00000476519 PDZD11Q5EBL8 140 aa7.36□□□□□ -1.23
SYNE1-223ENST00000476519 FA2HQ7L5A8 372 aa7.36□□□□□ -1.23
SYNE1-223ENST00000476519 LINC00469Q8N7U9 141 aa7.36□□□□□ -1.23
SYNE1-223ENST00000476519 SMCO4Q9NRQ5 59 aa7.36□□□□□ -1.23
SYNE1-223ENST00000476519 LRP2P98164 4655 aa7.36□□□□□ -1.23
SYNE1-223ENST00000476519 IGLV5-45A0A087WSX0 123 aa7.35□□□□□ -1.23
SYNE1-223ENST00000476519 M0QXV9 152 aa7.35□□□□□ -1.23
SYNE1-223ENST00000476519 KRTAP11-1Q8IUC1 163 aa7.35□□□□□ -1.23
SYNE1-223ENST00000476519 UBE2BP63146 152 aa7.34□□□□□ -1.23
SYNE1-223ENST00000476519 LBHQ53QV2 105 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-223ENST00000476519 SMIM1B2RUZ4 78 aa7.33□□□□□ -1.24
SYNE1-223ENST00000476519 C22orf24Q9Y442 160 aa7.33□□□□□ -1.24
SYNE1-223ENST00000476519 H0Y9J4 135 aa7.32□□□□□ -1.24
SYNE1-223ENST00000476519 H3BRM9 83 aa7.32□□□□□ -1.24
SYNE1-223ENST00000476519 LINC00614P0C842 121 aa7.32□□□□□ -1.24
SYNE1-223ENST00000476519 COX7B2Q8TF08 81 aa7.32□□□□□ -1.24
SYNE1-223ENST00000476519 XAGE1AQ9HD64 81 aa7.32□□□□□ -1.24
SYNE1-223ENST00000476519 TRAPPC1Q9Y5R8 145 aa7.32□□□□□ -1.24
SYNE1-223ENST00000476519 TP73-AS1Q9UF72 201 aa7.31□□□□□ -1.24
SYNE1-223ENST00000476519 RAB5BP61020 215 aa7.3□□□□□ -1.24
SYNE1-223ENST00000476519 NDUFA5Q16718 116 aa7.3□□□□□ -1.24
SYNE1-223ENST00000476519 SVBPQ8N300 66 aa7.3□□□□□ -1.24
SYNE1-223ENST00000476519 NUPR1O60356 82 aa7.29□□□□□ -1.24
SYNE1-223ENST00000476519 ZNF861PO60384 105 aa7.29□□□□□ -1.24
SYNE1-223ENST00000476519 SNAPINO95295 136 aa7.29□□□□□ -1.24
SYNE1-223ENST00000476519 APOC3P02656 99 aa7.29□□□□□ -1.24
SYNE1-223ENST00000476519 SPINK8P0C7L1 97 aa7.29□□□□□ -1.24
SYNE1-223ENST00000476519 IGLC3P0DOY3 106 aa7.29□□□□□ -1.24
SYNE1-223ENST00000476519 C18orf32Q8TCD1 76 aa7.29□□□□□ -1.24
SYNE1-223ENST00000476519 IGLV1-50A0A075B6I6 118 aa7.28□□□□□ -1.24
SYNE1-223ENST00000476519 HBDP02042 147 aa7.28□□□□□ -1.24
SYNE1-223ENST00000476519 MRPL55Q7Z7F7 128 aaKnown RBP7.28□□□□□ -1.24
SYNE1-223ENST00000476519 URB1-AS1Q96HZ7 61 aa7.28□□□□□ -1.24
SYNE1-223ENST00000476519 A0A096LNJ9 63 aa7.27□□□□□ -1.25
SYNE1-223ENST00000476519 IGLV5-39A0A0G2JS06 123 aa7.27□□□□□ -1.25
SYNE1-223ENST00000476519 ATP5LO75964 103 aa7.27□□□□□ -1.25
SYNE1-223ENST00000476519 NDUFA6P56556 154 aa7.27□□□□□ -1.25
SYNE1-223ENST00000476519 PRR26Q8N8Z3 221 aa7.27□□□□□ -1.25
SYNE1-223ENST00000476519 KRTAP1-4P0C5Y4 121 aa7.26□□□□□ -1.25
SYNE1-223ENST00000476519 IGLV5-37A0A075B6J1 123 aa7.24□□□□□ -1.25
SYNE1-223ENST00000476519 BCE1O60756 84 aa7.24□□□□□ -1.25
SYNE1-223ENST00000476519 ZNF22P17026 224 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-223ENST00000476519 RPL13AP40429 203 aaKnown RBP7.24□□□□□ -1.25
SYNE1-223ENST00000476519 RPL28P46779 137 aaKnown RBP7.24□□□□□ -1.25
SYNE1-223ENST00000476519 COX17Q14061 63 aa7.24□□□□□ -1.25
SYNE1-223ENST00000476519 SFTA2Q6UW10 78 aa7.24□□□□□ -1.25
SYNE1-223ENST00000476519 BAGE3Q86Y29 109 aa7.24□□□□□ -1.25
SYNE1-223ENST00000476519 LINC00167Q96N53 147 aa7.24□□□□□ -1.25
SYNE1-223ENST00000476519 PMCHL1Q16048 86 aa7.23□□□□□ -1.25
SYNE1-223ENST00000476519 YPEL4Q96NS1 127 aa7.23□□□□□ -1.25
SYNE1-223ENST00000476519 RNF213Q63HN8 5207 aa7.23□□□□□ -1.25
SYNE1-223ENST00000476519 NKAPP1Q8N9T2 125 aa7.22□□□□□ -1.25
SYNE1-223ENST00000476519 CHCHD1Q96BP2 118 aaKnown RBP7.22□□□□□ -1.25
SYNE1-223ENST00000476519 C11orf86A6NJI1 115 aa7.21□□□□□ -1.26
SYNE1-223ENST00000476519 RPL37AP8A6NKH3 93 aa7.21□□□□□ -1.26
SYNE1-223ENST00000476519 PFN2P35080 140 aa7.21□□□□□ -1.26
SYNE1-223ENST00000476519 TMEM170BQ5T4T1 132 aa7.21□□□□□ -1.26
SYNE1-223ENST00000476519 ERG28Q9UKR5 140 aa7.21□□□□□ -1.26
SYNE1-223ENST00000476519 TRAV12-1A0A0B4J245 112 aa7.2□□□□□ -1.26
SYNE1-223ENST00000476519 RPL24P83731 157 aaKnown RBP7.2□□□□□ -1.26
SYNE1-223ENST00000476519 CHTOPQ9Y3Y2 248 aaKnown RBP7.2□□□□□ -1.26
SYNE1-223ENST00000476519 GAGE10A6NGK3 116 aa7.19□□□□□ -1.26
SYNE1-223ENST00000476519 SND1-IT1Q9HBX3 110 aa7.19□□□□□ -1.26
SYNE1-223ENST00000476519 IFI27L1Q96BM0 104 aa7.18□□□□□ -1.26
SYNE1-223ENST00000476519 ZNF625Q96I27 306 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-223ENST00000476519 VPREB1P12018 145 aa7.17□□□□□ -1.26
SYNE1-223ENST00000476519 TMEM223A0PJW6 202 aa7.16□□□□□ -1.26
SYNE1-223ENST00000476519 CRYGAP11844 174 aa7.16□□□□□ -1.26
SYNE1-223ENST00000476519 UBE2AP49459 152 aa7.16□□□□□ -1.26
SYNE1-223ENST00000476519 KRTAP13-1Q8IUC0 172 aa7.16□□□□□ -1.26
SYNE1-223ENST00000476519 LPAP08519 4548 aa7.16□□□□□ -1.26
SYNE1-223ENST00000476519 HSBP1O75506 76 aa7.15□□□□□ -1.26
SYNE1-223ENST00000476519 IGKV2-28A0A075B6P5 120 aa7.14□□□□□ -1.27
SYNE1-223ENST00000476519 IGKV2D-28P01615 120 aa7.14□□□□□ -1.27
SYNE1-223ENST00000476519 LINC00158P58513 81 aa7.14□□□□□ -1.27
SYNE1-223ENST00000476519 LINC00587B1AMM8 73 aa7.13□□□□□ -1.27
SYNE1-223ENST00000476519 SCO1O75880 301 aa7.13□□□□□ -1.27
SYNE1-223ENST00000476519 CBLN2Q8IUK8 224 aa7.13□□□□□ -1.27
SYNE1-223ENST00000476519 FAM19A2Q8N3H0 131 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms