RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 NPSP0C0P6 89 aa11.99□□□□□ -0.49
COL9A3-210ENST00000472880 FABP9Q0Z7S8 132 aa11.99□□□□□ -0.49
COL9A3-210ENST00000472880 LINC01561Q8N1V8 128 aa11.99□□□□□ -0.49
COL9A3-210ENST00000472880 G0S2P27469 103 aa11.98□□□□□ -0.49
COL9A3-210ENST00000472880 LINC00173Q6ZV60 143 aa11.98□□□□□ -0.49
COL9A3-210ENST00000472880 AMELXQ99217 191 aa11.98□□□□□ -0.49
COL9A3-210ENST00000472880 PRSS2P07478 247 aa11.97□□□□□ -0.49
COL9A3-210ENST00000472880 ZC2HC1BQ5TFG8 222 aa11.97□□□□□ -0.49
COL9A3-210ENST00000472880 KRTAP7-1Q8IUC3 87 aa11.97□□□□□ -0.49
COL9A3-210ENST00000472880 TOMM6Q96B49 74 aa11.97□□□□□ -0.49
COL9A3-210ENST00000472880 LINC01546A6NGU7 62 aa11.96□□□□□ -0.49
COL9A3-210ENST00000472880 VCX2Q9H322 139 aa11.96□□□□□ -0.49
COL9A3-210ENST00000472880 C9orf129Q5T035 196 aaKnown RBP11.95□□□□□ -0.5
COL9A3-210ENST00000472880 TIMM17AQ99595 171 aa11.95□□□□□ -0.5
COL9A3-210ENST00000472880 TOMM7Q9P0U1 55 aa11.95□□□□□ -0.5
COL9A3-210ENST00000472880 CKS1BP61024 79 aa11.94□□□□□ -0.5
COL9A3-210ENST00000472880 PAPPA-AS1Q5QFB9 102 aa11.94□□□□□ -0.5
COL9A3-210ENST00000472880 TRAPPC1Q9Y5R8 145 aa11.94□□□□□ -0.5
COL9A3-210ENST00000472880 IGLV1-50A0A075B6I6 118 aa11.93□□□□□ -0.5
COL9A3-210ENST00000472880 FA2HQ7L5A8 372 aa11.93□□□□□ -0.5
COL9A3-210ENST00000472880 ERASQ7Z444 233 aa11.92□□□□□ -0.5
COL9A3-210ENST00000472880 SCGB3A1Q96QR1 104 aa11.92□□□□□ -0.5
COL9A3-210ENST00000472880 C6orf226Q5I0X4 101 aa11.91□□□□□ -0.5
COL9A3-210ENST00000472880 FAM19A3Q7Z5A8 133 aa11.91□□□□□ -0.5
COL9A3-210ENST00000472880 Q8IZM0 81 aa11.91□□□□□ -0.5
COL9A3-210ENST00000472880 SMCO4Q9NRQ5 59 aa11.91□□□□□ -0.5
COL9A3-210ENST00000472880 LINC01549A6NIU2 74 aa11.9□□□□□ -0.5
COL9A3-210ENST00000472880 KRTAP1-4P0C5Y4 121 aa11.9□□□□□ -0.5
COL9A3-210ENST00000472880 HERVK_113P63121 156 aa11.9□□□□□ -0.5
COL9A3-210ENST00000472880 SEC11AP67812 179 aa11.9□□□□□ -0.5
COL9A3-210ENST00000472880 YPEL4Q96NS1 127 aa11.9□□□□□ -0.5
COL9A3-210ENST00000472880 LINC00469Q8N7U9 141 aa11.89□□□□□ -0.51
COL9A3-210ENST00000472880 C18orf32Q8TCD1 76 aa11.89□□□□□ -0.51
COL9A3-210ENST00000472880 GEMIN7Q9H840 131 aaKnown RBP11.88□□□□□ -0.51
COL9A3-210ENST00000472880 RPL13AP40429 203 aaKnown RBP11.87□□□□□ -0.51
COL9A3-210ENST00000472880 URB1-AS1Q96HZ7 61 aa11.87□□□□□ -0.51
COL9A3-210ENST00000472880 XAGE1AQ9HD64 81 aa11.87□□□□□ -0.51
COL9A3-210ENST00000472880 CDKN2A-AS1Q9UH64 79 aa11.87□□□□□ -0.51
COL9A3-210ENST00000472880 F8VRH5 84 aa11.86□□□□□ -0.51
COL9A3-210ENST00000472880 SLC7A5P1Q8MH63 180 aa11.86□□□□□ -0.51
COL9A3-210ENST00000472880 NUPR1O60356 82 aa11.85□□□□□ -0.51
COL9A3-210ENST00000472880 LBHQ53QV2 105 aaPredicted RBP11.85□□□□□ -0.51
COL9A3-210ENST00000472880 C22orf24Q9Y442 160 aa11.85□□□□□ -0.51
COL9A3-210ENST00000472880 ZNF861PO60384 105 aa11.84□□□□□ -0.51
COL9A3-210ENST00000472880 LINC00614P0C842 121 aa11.84□□□□□ -0.51
COL9A3-210ENST00000472880 CBLN2Q8IUK8 224 aa11.84□□□□□ -0.51
COL9A3-210ENST00000472880 LPAP08519 4548 aa11.84□□□□□ -0.51
COL9A3-210ENST00000472880 A0A096LNJ9 63 aa11.83□□□□□ -0.52
COL9A3-210ENST00000472880 CXCL5P42830 114 aa11.83□□□□□ -0.52
COL9A3-210ENST00000472880 CST9LQ9H4G1 147 aa11.82□□□□□ -0.52
COL9A3-210ENST00000472880 TINCRA0A1B0GVN0 87 aa11.81□□□□□ -0.52
COL9A3-210ENST00000472880 RAB5BP61020 215 aa11.81□□□□□ -0.52
COL9A3-210ENST00000472880 PMVKQ15126 192 aa11.81□□□□□ -0.52
COL9A3-210ENST00000472880 HBDP02042 147 aa11.8□□□□□ -0.52
COL9A3-210ENST00000472880 MRPL55Q7Z7F7 128 aaKnown RBP11.8□□□□□ -0.52
COL9A3-210ENST00000472880 TP73-AS1Q9UF72 201 aa11.8□□□□□ -0.52
COL9A3-210ENST00000472880 SMIM1B2RUZ4 78 aa11.79□□□□□ -0.52
COL9A3-210ENST00000472880 PMCHL1Q16048 86 aa11.79□□□□□ -0.52
COL9A3-210ENST00000472880 IGLV5-45A0A087WSX0 123 aa11.78□□□□□ -0.52
COL9A3-210ENST00000472880 PRR4Q16378 134 aa11.78□□□□□ -0.52
COL9A3-210ENST00000472880 PDZD11Q5EBL8 140 aa11.77□□□□□ -0.53
COL9A3-210ENST00000472880 COX7B2Q8TF08 81 aa11.77□□□□□ -0.53
COL9A3-210ENST00000472880 RPL28P46779 137 aaKnown RBP11.76□□□□□ -0.53
COL9A3-210ENST00000472880 BCE1O60756 84 aa11.75□□□□□ -0.53
COL9A3-210ENST00000472880 NDUFA6P56556 154 aa11.74□□□□□ -0.53
COL9A3-210ENST00000472880 CHCHD1Q96BP2 118 aaKnown RBP11.74□□□□□ -0.53
COL9A3-210ENST00000472880 ATP5LO75964 103 aa11.73□□□□□ -0.53
COL9A3-210ENST00000472880 IGLC3P0DOY3 106 aa11.73□□□□□ -0.53
COL9A3-210ENST00000472880 RPL37AP8A6NKH3 93 aa11.72□□□□□ -0.53
COL9A3-210ENST00000472880 TRGC2P03986 189 aa11.72□□□□□ -0.53
COL9A3-210ENST00000472880 SPINK8P0C7L1 97 aa11.72□□□□□ -0.53
COL9A3-210ENST00000472880 LINC00167Q96N53 147 aa11.72□□□□□ -0.53
COL9A3-210ENST00000472880 GAGE10A6NGK3 116 aa11.7□□□□□ -0.54
COL9A3-210ENST00000472880 H3BRM9 83 aa11.7□□□□□ -0.54
COL9A3-210ENST00000472880 NKAPP1Q8N9T2 125 aa11.7□□□□□ -0.54
COL9A3-210ENST00000472880 A0A087X002 238 aa11.69□□□□□ -0.54
COL9A3-210ENST00000472880 TSPAN13O95857 204 aa11.69□□□□□ -0.54
COL9A3-210ENST00000472880 IGLV5-37A0A075B6J1 123 aa11.68□□□□□ -0.54
COL9A3-210ENST00000472880 CRYGAP11844 174 aa11.68□□□□□ -0.54
COL9A3-210ENST00000472880 ZNF22P17026 224 aaPredicted RBP11.68□□□□□ -0.54
COL9A3-210ENST00000472880 BAGE3Q86Y29 109 aa11.68□□□□□ -0.54
COL9A3-210ENST00000472880 COLCA2A8K830 154 aa11.67□□□□□ -0.54
COL9A3-210ENST00000472880 UBE2AP49459 152 aa11.67□□□□□ -0.54
COL9A3-210ENST00000472880 TYMSOSQ8TAI1 123 aa11.67□□□□□ -0.54
COL9A3-210ENST00000472880 HSBP1O75506 76 aa11.66□□□□□ -0.54
COL9A3-210ENST00000472880 IGLV5-39A0A0G2JS06 123 aa11.65□□□□□ -0.54
COL9A3-210ENST00000472880 C11orf86A6NJI1 115 aa11.65□□□□□ -0.54
COL9A3-210ENST00000472880 IFI27L1Q96BM0 104 aa11.65□□□□□ -0.54
COL9A3-210ENST00000472880 FAM19A2Q8N3H0 131 aa11.64□□□□□ -0.55
COL9A3-210ENST00000472880 TRAV12-1A0A0B4J245 112 aa11.63□□□□□ -0.55
COL9A3-210ENST00000472880 CHTOPQ9Y3Y2 248 aaKnown RBP11.63□□□□□ -0.55
COL9A3-210ENST00000472880 IGKV2-28A0A075B6P5 120 aa11.62□□□□□ -0.55
COL9A3-210ENST00000472880 IGKV2D-28P01615 120 aa11.62□□□□□ -0.55
COL9A3-210ENST00000472880 PFN2P35080 140 aa11.62□□□□□ -0.55
COL9A3-210ENST00000472880 LINC00310P59036 64 aa11.62□□□□□ -0.55
COL9A3-210ENST00000472880 TMEM170BQ5T4T1 132 aa11.62□□□□□ -0.55
COL9A3-210ENST00000472880 KRTAP13-1Q8IUC0 172 aa11.62□□□□□ -0.55
COL9A3-210ENST00000472880 SERF1AO75920 110 aa11.61□□□□□ -0.55
COL9A3-210ENST00000472880 ANAPC11Q9NYG5 84 aa11.61□□□□□ -0.55
COL9A3-210ENST00000472880 SCO1O75880 301 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms