RNA–Protein interactions for RNA: ENST00000470815.1

HERC3-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 4

Gene HERC3, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-208ENST00000470815 VAMP8Q9BV40 100 aa0.04□□□□□ -2.4
HERC3-208ENST00000470815 TOP2BQ02880 1626 aa0.04□□□□□ -2.4
HERC3-208ENST00000470815 PAPPAQ13219 1627 aa0.04□□□□□ -2.4
HERC3-208ENST00000470815 NHSL1Q5SYE7 1610 aa0.04□□□□□ -2.4
HERC3-208ENST00000470815 UNC79Q9P2D8 2635 aa0.04□□□□□ -2.4
HERC3-208ENST00000470815 AKAP6Q13023 2319 aa0.04□□□□□ -2.4
HERC3-208ENST00000470815 SYS1-DBNDD2H3BUS1 97 aa0.03□□□□□ -2.4
HERC3-208ENST00000470815 UQCRHP07919 91 aa0.03□□□□□ -2.4
HERC3-208ENST00000470815 ARMS2P0C7Q2 107 aa0.03□□□□□ -2.4
HERC3-208ENST00000470815 COX6B1P14854 86 aa0.03□□□□□ -2.4
HERC3-208ENST00000470815 KLK9Q2XQG4 91 aa0.03□□□□□ -2.4
HERC3-208ENST00000470815 C6orf201Q7Z4U5 140 aa0.03□□□□□ -2.4
HERC3-208ENST00000470815 C20orf78Q9BR46 151 aa0.03□□□□□ -2.4
HERC3-208ENST00000470815 HIGD1BQ9P298 99 aa0.03□□□□□ -2.4
HERC3-208ENST00000470815 ABCA3Q99758 1704 aa0.03□□□□□ -2.4
HERC3-208ENST00000470815 RNF213Q63HN8 5207 aa0.03□□□□□ -2.4
HERC3-208ENST00000470815 PKDREJQ9NTG1 2253 aa0.03□□□□□ -2.4
HERC3-208ENST00000470815 PLEKHH2Q8IVE3 1493 aa0.03□□□□□ -2.41
HERC3-208ENST00000470815 TEX14Q8IWB6 1497 aa0.03□□□□□ -2.41
HERC3-208ENST00000470815 MRC2Q9UBG0 1479 aa0.03□□□□□ -2.41
HERC3-208ENST00000470815 TULP4Q9NRJ4 1543 aa0.03□□□□□ -2.41
HERC3-208ENST00000470815 RYR2Q92736 4967 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 DNAJC13O75165 2243 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 PPRC1Q5VV67 1664 aaKnown RBP0.02□□□□□ -2.41
HERC3-208ENST00000470815 WNK2Q9Y3S1 2297 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 TRBV7-7A0A0K0K1E9 115 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 F8WEM9 126 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 H0Y9P7 68 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 H3BQF6 201 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 PRM1P04553 51 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 GNGT1P63211 74 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 VPS8Q8N3P4 1428 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 CSMD3Q7Z407 3707 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 HIVEP3Q5T1R4 2406 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 RYR1P21817 5038 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 TOPAZ1Q8N9V7 1692 aa0.02□□□□□ -2.41
HERC3-208ENST00000470815 HYDINQ4G0P3 5121 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 CHD1O14646 1710 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 COL7A1Q02388 2944 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 RYR3Q15413 4870 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 DOPEY2Q9Y3R5 2298 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 UQCRHLA0A096LP55 91 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 D6R8Y8 96 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 LEPROTL1O95214 131 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 MUSTN1Q8IVN3 82 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 FXYD6Q9H0Q3 95 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 APLNQ9ULZ1 77 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 UBR4Q5T4S7 5183 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 CCNB3Q8WWL7 1395 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 GAPVD1Q14C86 1478 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 DIP2CQ9Y2E4 1556 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 MARF1Q9Y4F3 1742 aaKnown RBP0.01□□□□□ -2.41
HERC3-208ENST00000470815 PDCD11Q14690 1871 aaKnown RBP0.01□□□□□ -2.41
HERC3-208ENST00000470815 NCOR1O75376 2440 aa0.01□□□□□ -2.41
HERC3-208ENST00000470815 DMBT1Q9UGM3 2413 aaPredicted RBP0.01□□□□□ -2.41
HERC3-208ENST00000470815 CPSF4LA6NMK7 179 aaKnown RBP0□□□□□ -2.41
HERC3-208ENST00000470815 SLIT1O75093 1534 aa0□□□□□ -2.41
HERC3-208ENST00000470815 UBR5O95071 2799 aaPredicted RBP0□□□□□ -2.41
HERC3-208ENST00000470815 VWFP04275 2813 aa0□□□□□ -2.41
HERC3-208ENST00000470815 IGLC2P0DOY2 106 aa0□□□□□ -2.41
HERC3-208ENST00000470815 IGLC3P0DOY3 106 aa0□□□□□ -2.41
HERC3-208ENST00000470815 EPPK1P58107 5090 aaKnown RBP0□□□□□ -2.41
HERC3-208ENST00000470815 SPTBN1Q01082 2364 aaKnown RBP0□□□□□ -2.41
HERC3-208ENST00000470815 ETDBQ3ZM63 59 aa0□□□□□ -2.41
HERC3-208ENST00000470815 TENM4Q6N022 2769 aa0□□□□□ -2.41
HERC3-208ENST00000470815 KNDC1Q76NI1 1749 aa0□□□□□ -2.41
HERC3-208ENST00000470815 DEFB105AQ8NG35 78 aa0□□□□□ -2.41
HERC3-208ENST00000470815 FYCO1Q9BQS8 1478 aa0□□□□□ -2.41
HERC3-208ENST00000470815 ZFHX3Q15911 3703 aa-0.01□□□□□ -2.41
HERC3-208ENST00000470815 SETBP1Q9Y6X0 1596 aa-0.01□□□□□ -2.41
HERC3-208ENST00000470815 RAPGEF2Q9Y4G8 1499 aa-0.01□□□□□ -2.41
HERC3-208ENST00000470815 DEFB112Q30KQ8 113 aa-0.01□□□□□ -2.41
HERC3-208ENST00000470815 ZNF720Q7Z2F6 126 aa-0.01□□□□□ -2.41
HERC3-208ENST00000470815 Q9H521 79 aa-0.01□□□□□ -2.41
HERC3-208ENST00000470815 URB1O60287 2271 aaKnown RBP-0.01□□□□□ -2.41
HERC3-208ENST00000470815 ABCA13Q86UQ4 5058 aa-0.02□□□□□ -2.41
HERC3-208ENST00000470815 EDC4Q6P2E9 1401 aaKnown RBP-0.02□□□□□ -2.41
HERC3-208ENST00000470815 GYPAP02724 150 aa-0.02□□□□□ -2.41
HERC3-208ENST00000470815 COX8AP10176 69 aa-0.02□□□□□ -2.41
HERC3-208ENST00000470815 HMGN3Q15651 99 aa-0.02□□□□□ -2.41
HERC3-208ENST00000470815 LELP1Q5T871 98 aa-0.02□□□□□ -2.41
HERC3-208ENST00000470815 USMG5Q96IX5 58 aa-0.02□□□□□ -2.41
HERC3-208ENST00000470815 ABCA2Q9BZC7 2435 aa-0.02□□□□□ -2.41
HERC3-208ENST00000470815 XRN1Q8IZH2 1706 aaKnown RBP-0.02□□□□□ -2.41
HERC3-208ENST00000470815 PKD1L1Q8TDX9 2849 aa-0.02□□□□□ -2.41
HERC3-208ENST00000470815 HMCN2Q8NDA2 5059 aa-0.02□□□□□ -2.41
HERC3-208ENST00000470815 CHD6Q8TD26 2715 aa-0.02□□□□□ -2.41
HERC3-208ENST00000470815 GVINP1Q7Z2Y8 2422 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 USH2AO75445 5202 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 CSPG4Q6UVK1 2322 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 KIAA1109Q2LD37 5005 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 TSC2P49815 1807 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 PAPPA2Q9BXP8 1791 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 NUP188Q5SRE5 1749 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 FMN2Q9NZ56 1722 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 I3L3M4 83 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 SPINK4O60575 86 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 H1FX-AS1Q4G0G2 97 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 PYY3Q5JQD4 70 aa-0.03□□□□□ -2.41
HERC3-208ENST00000470815 ALKAL2Q6UX46 152 aa-0.03□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms