RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ALKBH7Q9BT30 221 aaPredicted RBP10.01□□□□□ -0.81
CCDC28B-204ENST00000469003 CDKN2A-AS1Q9UH64 79 aa10.01□□□□□ -0.81
CCDC28B-204ENST00000469003 GEMIN7Q9H840 131 aaKnown RBP10□□□□□ -0.81
CCDC28B-204ENST00000469003 IGLV1-50A0A075B6I6 118 aa9.99□□□□□ -0.81
CCDC28B-204ENST00000469003 KRTAP1-4P0C5Y4 121 aa9.99□□□□□ -0.81
CCDC28B-204ENST00000469003 KIAA1644Q3SXP7 199 aa9.99□□□□□ -0.81
CCDC28B-204ENST00000469003 LINC00469Q8N7U9 141 aa9.99□□□□□ -0.81
CCDC28B-204ENST00000469003 TRAV9-1A0A075B6T8 112 aa9.98□□□□□ -0.81
CCDC28B-204ENST00000469003 F8VRH5 84 aa9.98□□□□□ -0.81
CCDC28B-204ENST00000469003 ADCYAP1P18509 176 aa9.97□□□□□ -0.81
CCDC28B-204ENST00000469003 ERASQ7Z444 233 aa9.97□□□□□ -0.81
CCDC28B-204ENST00000469003 C22orf24Q9Y442 160 aa9.97□□□□□ -0.81
CCDC28B-204ENST00000469003 CXCL5P42830 114 aa9.96□□□□□ -0.82
CCDC28B-204ENST00000469003 UQCC3Q6UW78 93 aa9.96□□□□□ -0.82
CCDC28B-204ENST00000469003 SCGB3A1Q96QR1 104 aa9.96□□□□□ -0.82
CCDC28B-204ENST00000469003 XAGE1AQ9HD64 81 aa9.96□□□□□ -0.82
CCDC28B-204ENST00000469003 NUPR1O60356 82 aa9.95□□□□□ -0.82
CCDC28B-204ENST00000469003 LBHQ53QV2 105 aaPredicted RBP9.95□□□□□ -0.82
CCDC28B-204ENST00000469003 TINCRA0A1B0GVN0 87 aa9.94□□□□□ -0.82
CCDC28B-204ENST00000469003 TMEM218A2RU14 115 aa9.94□□□□□ -0.82
CCDC28B-204ENST00000469003 LINC01549A6NIU2 74 aa9.94□□□□□ -0.82
CCDC28B-204ENST00000469003 SMIM1B2RUZ4 78 aa9.94□□□□□ -0.82
CCDC28B-204ENST00000469003 ZNF861PO60384 105 aa9.94□□□□□ -0.82
CCDC28B-204ENST00000469003 LINC01546A6NGU7 62 aa9.93□□□□□ -0.82
CCDC28B-204ENST00000469003 RPL13AP40429 203 aaKnown RBP9.93□□□□□ -0.82
CCDC28B-204ENST00000469003 PDZD11Q5EBL8 140 aa9.93□□□□□ -0.82
CCDC28B-204ENST00000469003 GNB1LQ9BYB4 327 aa9.93□□□□□ -0.82
CCDC28B-204ENST00000469003 TP73-AS1Q9UF72 201 aa9.93□□□□□ -0.82
CCDC28B-204ENST00000469003 IGLV5-45A0A087WSX0 123 aa9.92□□□□□ -0.82
CCDC28B-204ENST00000469003 S100PP25815 95 aa9.92□□□□□ -0.82
CCDC28B-204ENST00000469003 CARHSP1Q9Y2V2 147 aaKnown RBP9.92□□□□□ -0.82
CCDC28B-204ENST00000469003 MRPL55Q7Z7F7 128 aaKnown RBP9.91□□□□□ -0.82
CCDC28B-204ENST00000469003 COX7B2Q8TF08 81 aa9.91□□□□□ -0.82
CCDC28B-204ENST00000469003 SEC11CQ9BY50 192 aa9.9□□□□□ -0.82
CCDC28B-204ENST00000469003 CST9LQ9H4G1 147 aa9.9□□□□□ -0.82
CCDC28B-204ENST00000469003 LPAP08519 4548 aa9.9□□□□□ -0.83
CCDC28B-204ENST00000469003 COX19Q49B96 90 aa9.89□□□□□ -0.83
CCDC28B-204ENST00000469003 IFITM2Q01629 132 aa9.88□□□□□ -0.83
CCDC28B-204ENST00000469003 PMVKQ15126 192 aa9.88□□□□□ -0.83
CCDC28B-204ENST00000469003 BCE1O60756 84 aa9.87□□□□□ -0.83
CCDC28B-204ENST00000469003 SPINK8P0C7L1 97 aa9.87□□□□□ -0.83
CCDC28B-204ENST00000469003 FA2HQ7L5A8 372 aa9.87□□□□□ -0.83
CCDC28B-204ENST00000469003 KRTAP9-2Q9BYQ4 174 aa9.87□□□□□ -0.83
CCDC28B-204ENST00000469003 SMCO4Q9NRQ5 59 aa9.87□□□□□ -0.83
CCDC28B-204ENST00000469003 RPL28P46779 137 aaKnown RBP9.86□□□□□ -0.83
CCDC28B-204ENST00000469003 LINC00167Q96N53 147 aa9.86□□□□□ -0.83
CCDC28B-204ENST00000469003 MRPL18Q9H0U6 180 aaKnown RBP9.86□□□□□ -0.83
CCDC28B-204ENST00000469003 FABP9Q0Z7S8 132 aa9.85□□□□□ -0.83
CCDC28B-204ENST00000469003 IGLV5-37A0A075B6J1 123 aa9.84□□□□□ -0.83
CCDC28B-204ENST00000469003 RPL37AP8A6NKH3 93 aa9.84□□□□□ -0.83
CCDC28B-204ENST00000469003 H3BRM9 83 aa9.84□□□□□ -0.83
CCDC28B-204ENST00000469003 RAB5BP61020 215 aa9.83□□□□□ -0.84
CCDC28B-204ENST00000469003 ATP5LO75964 103 aa9.82□□□□□ -0.84
CCDC28B-204ENST00000469003 IGLC3P0DOY3 106 aa9.82□□□□□ -0.84
CCDC28B-204ENST00000469003 COMMD7Q86VX2 200 aa9.82□□□□□ -0.84
CCDC28B-204ENST00000469003 GAGE10A6NGK3 116 aa9.81□□□□□ -0.84
CCDC28B-204ENST00000469003 RHEBQ15382 184 aa9.81□□□□□ -0.84
CCDC28B-204ENST00000469003 PRR4Q16378 134 aa9.81□□□□□ -0.84
CCDC28B-204ENST00000469003 C10orf91Q5T1B1 145 aa9.81□□□□□ -0.84
CCDC28B-204ENST00000469003 NKAPP1Q8N9T2 125 aa9.81□□□□□ -0.84
CCDC28B-204ENST00000469003 A0A096LNJ9 63 aa9.8□□□□□ -0.84
CCDC28B-204ENST00000469003 IGLV5-39A0A0G2JS06 123 aa9.8□□□□□ -0.84
CCDC28B-204ENST00000469003 RPS10P5Q9NQ39 176 aa9.8□□□□□ -0.84
CCDC28B-204ENST00000469003 A0A087X002 238 aa9.79□□□□□ -0.84
CCDC28B-204ENST00000469003 CRYGAP11844 174 aa9.78□□□□□ -0.84
CCDC28B-204ENST00000469003 ZNF22P17026 224 aaPredicted RBP9.78□□□□□ -0.84
CCDC28B-204ENST00000469003 NDUFA6P56556 154 aa9.78□□□□□ -0.84
CCDC28B-204ENST00000469003 KRTAP13-1Q8IUC0 172 aa9.78□□□□□ -0.84
CCDC28B-204ENST00000469003 URB1-AS1Q96HZ7 61 aa9.78□□□□□ -0.84
CCDC28B-204ENST00000469003 LINC00614P0C842 121 aa9.77□□□□□ -0.85
CCDC28B-204ENST00000469003 PFN2P35080 140 aa9.77□□□□□ -0.85
CCDC28B-204ENST00000469003 UBE2AP49459 152 aa9.77□□□□□ -0.85
CCDC28B-204ENST00000469003 C18orf32Q8TCD1 76 aa9.77□□□□□ -0.85
CCDC28B-204ENST00000469003 TSPAN13O95857 204 aa9.76□□□□□ -0.85
CCDC28B-204ENST00000469003 HBDP02042 147 aa9.76□□□□□ -0.85
CCDC28B-204ENST00000469003 TYMSOSQ8TAI1 123 aa9.76□□□□□ -0.85
CCDC28B-204ENST00000469003 TRAPPC1Q9Y5R8 145 aa9.76□□□□□ -0.85
CCDC28B-204ENST00000469003 SCO1O75880 301 aa9.75□□□□□ -0.85
CCDC28B-204ENST00000469003 ERG28Q9UKR5 140 aa9.75□□□□□ -0.85
CCDC28B-204ENST00000469003 IGKV2-28A0A075B6P5 120 aa9.74□□□□□ -0.85
CCDC28B-204ENST00000469003 IGKV2D-28P01615 120 aa9.74□□□□□ -0.85
CCDC28B-204ENST00000469003 VPREB1P12018 145 aa9.74□□□□□ -0.85
CCDC28B-204ENST00000469003 COX17Q14061 63 aa9.74□□□□□ -0.85
CCDC28B-204ENST00000469003 SND1-IT1Q9HBX3 110 aa9.74□□□□□ -0.85
CCDC28B-204ENST00000469003 A0A0U1RQV1 116 aa9.73□□□□□ -0.85
CCDC28B-204ENST00000469003 KRTAP9-6A0A140TA67 174 aa9.73□□□□□ -0.85
CCDC28B-204ENST00000469003 PMCHL1Q16048 86 aa9.73□□□□□ -0.85
CCDC28B-204ENST00000469003 ANAPC11Q9NYG5 84 aa9.73□□□□□ -0.85
CCDC28B-204ENST00000469003 MUC2Q02817 5179 aa9.72□□□□□ -0.85
CCDC28B-204ENST00000469003 C11orf86A6NJI1 115 aa9.72□□□□□ -0.85
CCDC28B-204ENST00000469003 FAM229BQ4G0N7 80 aa9.72□□□□□ -0.85
CCDC28B-204ENST00000469003 BAGE3Q86Y29 109 aa9.72□□□□□ -0.85
CCDC28B-204ENST00000469003 RPL24P83731 157 aaKnown RBP9.71□□□□□ -0.86
CCDC28B-204ENST00000469003 KRTAP13-2Q52LG2 175 aa9.71□□□□□ -0.86
CCDC28B-204ENST00000469003 TMEM170BQ5T4T1 132 aa9.71□□□□□ -0.86
CCDC28B-204ENST00000469003 SFTA2Q6UW10 78 aa9.71□□□□□ -0.86
CCDC28B-204ENST00000469003 ZNF625Q96I27 306 aaPredicted RBP9.71□□□□□ -0.86
CCDC28B-204ENST00000469003 TMEM126AQ9H061 195 aa9.7□□□□□ -0.86
CCDC28B-204ENST00000469003 PRLHP81277 87 aa9.69□□□□□ -0.86
CCDC28B-204ENST00000469003 FAM19A1Q7Z5A9 133 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms