RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 CDKN2A-AS1Q9UH64 79 aa11.5□□□□□ -0.57
COL9A3-206ENST00000466532 G0S2P27469 103 aa11.49□□□□□ -0.57
COL9A3-206ENST00000466532 GEMIN7Q9H840 131 aaKnown RBP11.49□□□□□ -0.57
COL9A3-206ENST00000466532 XAGE1AQ9HD64 81 aa11.49□□□□□ -0.57
COL9A3-206ENST00000466532 C22orf24Q9Y442 160 aa11.49□□□□□ -0.57
COL9A3-206ENST00000466532 TIMM17AQ99595 171 aa11.48□□□□□ -0.57
COL9A3-206ENST00000466532 F8VRH5 84 aa11.47□□□□□ -0.57
COL9A3-206ENST00000466532 ZNF861PO60384 105 aa11.47□□□□□ -0.57
COL9A3-206ENST00000466532 RPL13AP40429 203 aaKnown RBP11.47□□□□□ -0.57
COL9A3-206ENST00000466532 TOMM6Q96B49 74 aa11.47□□□□□ -0.57
COL9A3-206ENST00000466532 NUPR1O60356 82 aa11.46□□□□□ -0.57
COL9A3-206ENST00000466532 KIAA1644Q3SXP7 199 aa11.46□□□□□ -0.57
COL9A3-206ENST00000466532 LBHQ53QV2 105 aaPredicted RBP11.46□□□□□ -0.57
COL9A3-206ENST00000466532 CXCL5P42830 114 aa11.44□□□□□ -0.58
COL9A3-206ENST00000466532 ERASQ7Z444 233 aa11.43□□□□□ -0.58
COL9A3-206ENST00000466532 SCGB3A1Q96QR1 104 aa11.43□□□□□ -0.58
COL9A3-206ENST00000466532 CARHSP1Q9Y2V2 147 aaKnown RBP11.43□□□□□ -0.58
COL9A3-206ENST00000466532 MRPL55Q7Z7F7 128 aaKnown RBP11.42□□□□□ -0.58
COL9A3-206ENST00000466532 TP73-AS1Q9UF72 201 aa11.42□□□□□ -0.58
COL9A3-206ENST00000466532 SMIM1B2RUZ4 78 aa11.41□□□□□ -0.58
COL9A3-206ENST00000466532 ADCYAP1P18509 176 aa11.4□□□□□ -0.58
COL9A3-206ENST00000466532 PRR4Q16378 134 aa11.4□□□□□ -0.58
COL9A3-206ENST00000466532 PDZD11Q5EBL8 140 aa11.4□□□□□ -0.58
COL9A3-206ENST00000466532 COX7B2Q8TF08 81 aa11.4□□□□□ -0.58
COL9A3-206ENST00000466532 TINCRA0A1B0GVN0 87 aa11.39□□□□□ -0.59
COL9A3-206ENST00000466532 CLLU1Q5K131 121 aa11.39□□□□□ -0.59
COL9A3-206ENST00000466532 TRAV9-1A0A075B6T8 112 aa11.38□□□□□ -0.59
COL9A3-206ENST00000466532 IGLV5-45A0A087WSX0 123 aa11.37□□□□□ -0.59
COL9A3-206ENST00000466532 BCE1O60756 84 aa11.37□□□□□ -0.59
COL9A3-206ENST00000466532 RPL28P46779 137 aaKnown RBP11.37□□□□□ -0.59
COL9A3-206ENST00000466532 LINC00167Q96N53 147 aa11.37□□□□□ -0.59
COL9A3-206ENST00000466532 LINC01549A6NIU2 74 aa11.36□□□□□ -0.59
COL9A3-206ENST00000466532 RPL37AP8A6NKH3 93 aa11.36□□□□□ -0.59
COL9A3-206ENST00000466532 LINC01546A6NGU7 62 aa11.35□□□□□ -0.59
COL9A3-206ENST00000466532 SPINK8P0C7L1 97 aa11.35□□□□□ -0.59
COL9A3-206ENST00000466532 CST9LQ9H4G1 147 aa11.35□□□□□ -0.59
COL9A3-206ENST00000466532 TMEM218A2RU14 115 aa11.34□□□□□ -0.59
COL9A3-206ENST00000466532 GAGE10A6NGK3 116 aa11.34□□□□□ -0.59
COL9A3-206ENST00000466532 S100PP25815 95 aa11.34□□□□□ -0.59
COL9A3-206ENST00000466532 RAB5BP61020 215 aa11.34□□□□□ -0.59
COL9A3-206ENST00000466532 UQCC3Q6UW78 93 aa11.34□□□□□ -0.59
COL9A3-206ENST00000466532 GNB1LQ9BYB4 327 aa11.34□□□□□ -0.59
COL9A3-206ENST00000466532 A0A087X002 238 aa11.33□□□□□ -0.6
COL9A3-206ENST00000466532 TSPAN13O95857 204 aa11.33□□□□□ -0.6
COL9A3-206ENST00000466532 PMVKQ15126 192 aa11.33□□□□□ -0.6
COL9A3-206ENST00000466532 FA2HQ7L5A8 372 aa11.31□□□□□ -0.6
COL9A3-206ENST00000466532 NKAPP1Q8N9T2 125 aa11.31□□□□□ -0.6
COL9A3-206ENST00000466532 SMCO4Q9NRQ5 59 aa11.31□□□□□ -0.6
COL9A3-206ENST00000466532 IGLV5-37A0A075B6J1 123 aa11.3□□□□□ -0.6
COL9A3-206ENST00000466532 CRYGAP11844 174 aa11.3□□□□□ -0.6
COL9A3-206ENST00000466532 TYMSOSQ8TAI1 123 aa11.3□□□□□ -0.6
COL9A3-206ENST00000466532 MRPL18Q9H0U6 180 aaKnown RBP11.3□□□□□ -0.6
COL9A3-206ENST00000466532 H3BRM9 83 aa11.29□□□□□ -0.6
COL9A3-206ENST00000466532 ATP5LO75964 103 aa11.29□□□□□ -0.6
COL9A3-206ENST00000466532 COX19Q49B96 90 aa11.29□□□□□ -0.6
COL9A3-206ENST00000466532 FABP9Q0Z7S8 132 aa11.28□□□□□ -0.6
COL9A3-206ENST00000466532 SEC11CQ9BY50 192 aa11.28□□□□□ -0.6
COL9A3-206ENST00000466532 UBE2AP49459 152 aa11.27□□□□□ -0.61
COL9A3-206ENST00000466532 PFN2P35080 140 aa11.26□□□□□ -0.61
COL9A3-206ENST00000466532 KRTAP13-1Q8IUC0 172 aa11.26□□□□□ -0.61
COL9A3-206ENST00000466532 ANAPC11Q9NYG5 84 aa11.26□□□□□ -0.61
COL9A3-206ENST00000466532 IGKV2-28A0A075B6P5 120 aa11.25□□□□□ -0.61
COL9A3-206ENST00000466532 SCO1O75880 301 aa11.25□□□□□ -0.61
COL9A3-206ENST00000466532 IGKV2D-28P01615 120 aa11.25□□□□□ -0.61
COL9A3-206ENST00000466532 IGLC3P0DOY3 106 aa11.25□□□□□ -0.61
COL9A3-206ENST00000466532 NDUFA6P56556 154 aa11.24□□□□□ -0.61
COL9A3-206ENST00000466532 IFITM2Q01629 132 aa11.24□□□□□ -0.61
COL9A3-206ENST00000466532 MUC2Q02817 5179 aa11.23□□□□□ -0.61
COL9A3-206ENST00000466532 IGLV5-39A0A0G2JS06 123 aa11.23□□□□□ -0.61
COL9A3-206ENST00000466532 ZNF22P17026 224 aaPredicted RBP11.22□□□□□ -0.61
COL9A3-206ENST00000466532 KRTAP13-2Q52LG2 175 aa11.22□□□□□ -0.61
COL9A3-206ENST00000466532 A0A096LNJ9 63 aa11.21□□□□□ -0.61
COL9A3-206ENST00000466532 ERG28Q9UKR5 140 aa11.21□□□□□ -0.61
COL9A3-206ENST00000466532 FAM229BQ4G0N7 80 aa11.2□□□□□ -0.62
COL9A3-206ENST00000466532 SND1-IT1Q9HBX3 110 aa11.2□□□□□ -0.62
COL9A3-206ENST00000466532 RPS10P5Q9NQ39 176 aa11.2□□□□□ -0.62
COL9A3-206ENST00000466532 VPREB1P12018 145 aa11.19□□□□□ -0.62
COL9A3-206ENST00000466532 PRLHP81277 87 aa11.19□□□□□ -0.62
COL9A3-206ENST00000466532 RHEBQ15382 184 aa11.19□□□□□ -0.62
COL9A3-206ENST00000466532 COMMD7Q86VX2 200 aa11.19□□□□□ -0.62
COL9A3-206ENST00000466532 URB1-AS1Q96HZ7 61 aa11.19□□□□□ -0.62
COL9A3-206ENST00000466532 HBDP02042 147 aa11.18□□□□□ -0.62
COL9A3-206ENST00000466532 COX17Q14061 63 aa11.18□□□□□ -0.62
COL9A3-206ENST00000466532 FAM19A1Q7Z5A9 133 aa11.18□□□□□ -0.62
COL9A3-206ENST00000466532 C18orf32Q8TCD1 76 aa11.18□□□□□ -0.62
COL9A3-206ENST00000466532 ZNF625Q96I27 306 aaPredicted RBP11.18□□□□□ -0.62
COL9A3-206ENST00000466532 TMEM238C9JI98 176 aa11.17□□□□□ -0.62
COL9A3-206ENST00000466532 LINC00614P0C842 121 aa11.17□□□□□ -0.62
COL9A3-206ENST00000466532 RPL24P83731 157 aaKnown RBP11.17□□□□□ -0.62
COL9A3-206ENST00000466532 PMCHL1Q16048 86 aa11.17□□□□□ -0.62
COL9A3-206ENST00000466532 C10orf91Q5T1B1 145 aa11.17□□□□□ -0.62
COL9A3-206ENST00000466532 LINC00304Q8N9R0 145 aa11.17□□□□□ -0.62
COL9A3-206ENST00000466532 TMEM126AQ9H061 195 aa11.17□□□□□ -0.62
COL9A3-206ENST00000466532 TRAPPC1Q9Y5R8 145 aa11.16□□□□□ -0.62
COL9A3-206ENST00000466532 IGKV2D-26A0A0A0MRZ7 120 aa11.15□□□□□ -0.62
COL9A3-206ENST00000466532 C11orf86A6NJI1 115 aa11.15□□□□□ -0.62
COL9A3-206ENST00000466532 TMEM170BQ5T4T1 132 aa11.15□□□□□ -0.62
COL9A3-206ENST00000466532 RETNLBQ9BQ08 111 aa11.15□□□□□ -0.62
COL9A3-206ENST00000466532 A0A0U1RQV1 116 aa11.14□□□□□ -0.63
COL9A3-206ENST00000466532 BAGE3Q86Y29 109 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms