RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 MDFIQ99750 246 aa12.54□□□□□ -0.4
COL9A3-205ENST00000466192 TRBV20-1A0A075B6N2 111 aa12.54□□□□□ -0.4
COL9A3-205ENST00000466192 A0A087WZ39 114 aa12.54□□□□□ -0.4
COL9A3-205ENST00000466192 IFITM1P13164 125 aa12.54□□□□□ -0.4
COL9A3-205ENST00000466192 CARD19Q96LW7 228 aa12.54□□□□□ -0.4
COL9A3-205ENST00000466192 K7EIL1 84 aa12.53□□□□□ -0.4
COL9A3-205ENST00000466192 SCGB1C2P0DMR2 95 aa12.53□□□□□ -0.4
COL9A3-205ENST00000466192 HERV-K104P63124 156 aa12.53□□□□□ -0.4
COL9A3-205ENST00000466192 Q1RN00 199 aa12.53□□□□□ -0.4
COL9A3-205ENST00000466192 SS18Q15532 418 aa12.53□□□□□ -0.4
COL9A3-205ENST00000466192 LELP1Q5T871 98 aa12.53□□□□□ -0.4
COL9A3-205ENST00000466192 LINC00269Q8N2A0 174 aa12.52□□□□□ -0.4
COL9A3-205ENST00000466192 LINC00308Q8TCZ7 52 aa12.52□□□□□ -0.4
COL9A3-205ENST00000466192 TCL1BO95988 128 aa12.51□□□□□ -0.41
COL9A3-205ENST00000466192 NANOS2P60321 138 aaKnown RBP12.51□□□□□ -0.41
COL9A3-205ENST00000466192 ANGP03950 147 aaKnown RBP12.5□□□□□ -0.41
COL9A3-205ENST00000466192 KPRPQ5T749 579 aaPredicted RBP12.5□□□□□ -0.41
COL9A3-205ENST00000466192 LYPD5Q6UWN5 251 aa12.5□□□□□ -0.41
COL9A3-205ENST00000466192 HUWE1Q7Z6Z7 4374 aaKnown RBP12.5□□□□□ -0.41
COL9A3-205ENST00000466192 H3BNG1 76 aa12.5□□□□□ -0.41
COL9A3-205ENST00000466192 M0QXV9 152 aa12.49□□□□□ -0.41
COL9A3-205ENST00000466192 SOSTDC1Q6X4U4 206 aa12.49□□□□□ -0.41
COL9A3-205ENST00000466192 C11orf45Q8TAV5 145 aa12.49□□□□□ -0.41
COL9A3-205ENST00000466192 DEFB121Q5J5C9 76 aa12.48□□□□□ -0.41
COL9A3-205ENST00000466192 MRAPQ8TCY5 172 aa12.47□□□□□ -0.41
COL9A3-205ENST00000466192 TM2D3Q9BRN9 247 aa12.47□□□□□ -0.41
COL9A3-205ENST00000466192 IGLV10-54A0A075B6I4 117 aa12.47□□□□□ -0.41
COL9A3-205ENST00000466192 REG3AQ06141 175 aa12.47□□□□□ -0.41
COL9A3-205ENST00000466192 COPS9Q8WXC6 57 aa12.46□□□□□ -0.42
COL9A3-205ENST00000466192 TRIAP1O43715 76 aa12.45□□□□□ -0.42
COL9A3-205ENST00000466192 DEFB131BA0A096LNP1 70 aa12.45□□□□□ -0.42
COL9A3-205ENST00000466192 RPL13AP40429 203 aaKnown RBP12.45□□□□□ -0.42
COL9A3-205ENST00000466192 C6orf226Q5I0X4 101 aa12.45□□□□□ -0.42
COL9A3-205ENST00000466192 ANAPC13Q9BS18 74 aa12.45□□□□□ -0.42
COL9A3-205ENST00000466192 TRBV30A0A0K0K1B3 111 aa12.44□□□□□ -0.42
COL9A3-205ENST00000466192 MIR7-3HGQ8N6C7 128 aa12.44□□□□□ -0.42
COL9A3-205ENST00000466192 ANKRD29Q8N6D5 301 aa12.44□□□□□ -0.42
COL9A3-205ENST00000466192 CHCHD10Q8WYQ3 142 aaPredicted RBP12.44□□□□□ -0.42
COL9A3-205ENST00000466192 LINC00158P58513 81 aa12.43□□□□□ -0.42
COL9A3-205ENST00000466192 CD164L2Q6UWJ8 174 aa12.43□□□□□ -0.42
COL9A3-205ENST00000466192 PFN2P35080 140 aa12.41□□□□□ -0.42
COL9A3-205ENST00000466192 KLK12Q9UKR0 248 aa12.41□□□□□ -0.42
COL9A3-205ENST00000466192 COX7A2LO14548 114 aa12.4□□□□□ -0.42
COL9A3-205ENST00000466192 WFDC10BQ8IUB3 73 aa12.4□□□□□ -0.42
COL9A3-205ENST00000466192 Q8IZM0 81 aa12.4□□□□□ -0.42
COL9A3-205ENST00000466192 LINC01600Q96MT4 127 aa12.4□□□□□ -0.42
COL9A3-205ENST00000466192 C2orf82Q6UX34 121 aa12.4□□□□□ -0.42
COL9A3-205ENST00000466192 PRR34Q9NV39 138 aa12.4□□□□□ -0.42
COL9A3-205ENST00000466192 IBA57-AS1B1ANH7 110 aa12.39□□□□□ -0.43
COL9A3-205ENST00000466192 ESRGQ1W209 222 aa12.39□□□□□ -0.43
COL9A3-205ENST00000466192 LINC01561Q8N1V8 128 aa12.39□□□□□ -0.43
COL9A3-205ENST00000466192 SLC25A20O43772 301 aa12.39□□□□□ -0.43
COL9A3-205ENST00000466192 MALP21145 153 aa12.38□□□□□ -0.43
COL9A3-205ENST00000466192 COL7A1Q02388 2944 aa12.38□□□□□ -0.43
COL9A3-205ENST00000466192 COX6CP09669 75 aa12.37□□□□□ -0.43
COL9A3-205ENST00000466192 ATXN8Q156A1 80 aa12.37□□□□□ -0.43
COL9A3-205ENST00000466192 ENHOQ6UWT2 76 aa12.37□□□□□ -0.43
COL9A3-205ENST00000466192 SS18L2Q9UHA2 77 aa12.37□□□□□ -0.43
COL9A3-205ENST00000466192 NHLRC4P0CG21 123 aaPredicted RBP12.37□□□□□ -0.43
COL9A3-205ENST00000466192 C9JAW5 83 aa12.36□□□□□ -0.43
COL9A3-205ENST00000466192 PPDPFQ9H3Y8 114 aa12.36□□□□□ -0.43
COL9A3-205ENST00000466192 SND1-IT1Q9HBX3 110 aa12.36□□□□□ -0.43
COL9A3-205ENST00000466192 DNAH9Q9NYC9 4486 aa12.36□□□□□ -0.43
COL9A3-205ENST00000466192 CLEC2BQ92478 149 aa12.35□□□□□ -0.43
COL9A3-205ENST00000466192 TRAV10A0A0B4J240 114 aa12.35□□□□□ -0.43
COL9A3-205ENST00000466192 KIAA0087Q14695 138 aa12.35□□□□□ -0.43
COL9A3-205ENST00000466192 CCL18P55774 89 aa12.34□□□□□ -0.43
COL9A3-205ENST00000466192 GAGE2BQ13066 116 aa12.34□□□□□ -0.43
COL9A3-205ENST00000466192 GAGE2EQ4V326 116 aa12.34□□□□□ -0.43
COL9A3-205ENST00000466192 GAGE2DQ9UEU5 116 aa12.34□□□□□ -0.43
COL9A3-205ENST00000466192 CFAP161Q6P656 301 aa12.33□□□□□ -0.44
COL9A3-205ENST00000466192 B5MCH6 92 aa12.33□□□□□ -0.44
COL9A3-205ENST00000466192 SNCGO76070 127 aa12.33□□□□□ -0.44
COL9A3-205ENST00000466192 LINC01620Q4KN68 170 aa12.33□□□□□ -0.44
COL9A3-205ENST00000466192 Q6Q795 121 aa12.33□□□□□ -0.44
COL9A3-205ENST00000466192 UBE2WQ96B02 151 aa12.33□□□□□ -0.44
COL9A3-205ENST00000466192 NDUFV3P56181 108 aaKnown RBP12.32□□□□□ -0.44
COL9A3-205ENST00000466192 IGKV2-28A0A075B6P5 120 aa12.31□□□□□ -0.44
COL9A3-205ENST00000466192 IGKV2D-28P01615 120 aa12.31□□□□□ -0.44
COL9A3-205ENST00000466192 CRPP02741 224 aa12.31□□□□□ -0.44
COL9A3-205ENST00000466192 LINC00337Q8N6G1 96 aa12.31□□□□□ -0.44
COL9A3-205ENST00000466192 TRAV13-2A0A0B4J235 113 aa12.3□□□□□ -0.44
COL9A3-205ENST00000466192 CXCL5P42830 114 aa12.29□□□□□ -0.44
COL9A3-205ENST00000466192 TRAV8-4A0A0B4J246 113 aa12.29□□□□□ -0.44
COL9A3-205ENST00000466192 NTN5Q8WTR8 489 aaPredicted RBP12.29□□□□□ -0.44
COL9A3-205ENST00000466192 STAB2Q8WWQ8 2551 aa12.29□□□□□ -0.44
COL9A3-205ENST00000466192 LST1O00453 97 aa12.28□□□□□ -0.44
COL9A3-205ENST00000466192 C9orf116Q5BN46 136 aaPredicted RBP12.28□□□□□ -0.44
COL9A3-205ENST00000466192 LINC00526Q96FQ7 95 aa12.28□□□□□ -0.44
COL9A3-205ENST00000466192 TTC32Q5I0X7 151 aa12.28□□□□□ -0.44
COL9A3-205ENST00000466192 C6orf223Q8N319 242 aa12.28□□□□□ -0.44
COL9A3-205ENST00000466192 C15orf53Q8NAA6 179 aa12.28□□□□□ -0.44
COL9A3-205ENST00000466192 KLK5Q9Y337 293 aaPredicted RBP12.28□□□□□ -0.44
COL9A3-205ENST00000466192 TRBV10-2A0A0K0K1G8 114 aa12.27□□□□□ -0.45
COL9A3-205ENST00000466192 LINC01556Q5JQF7 62 aa12.27□□□□□ -0.45
COL9A3-205ENST00000466192 SPAG11BQ08648 103 aa12.26□□□□□ -0.45
COL9A3-205ENST00000466192 COX17Q14061 63 aa12.25□□□□□ -0.45
COL9A3-205ENST00000466192 KRTAP26-1Q6PEX3 210 aa12.25□□□□□ -0.45
COL9A3-205ENST00000466192 CCDC179H3BU77 68 aa12.24□□□□□ -0.45
COL9A3-205ENST00000466192 C10orf25Q5T742 122 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms