RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 KRTAP1-1Q07627 177 aa5.59□□□□□ -1.51
USP54-210ENST00000466048 FHL3Q13643 280 aa5.59□□□□□ -1.51
USP54-210ENST00000466048 LINC00467Q9BRT7 94 aa5.59□□□□□ -1.51
USP54-210ENST00000466048 FAM19A3Q7Z5A8 133 aa5.59□□□□□ -1.51
USP54-210ENST00000466048 NBEAQ8NFP9 2946 aa5.58□□□□□ -1.52
USP54-210ENST00000466048 A8MTW9 85 aa5.58□□□□□ -1.52
USP54-210ENST00000466048 IBA57-AS1B1ANH7 110 aa5.58□□□□□ -1.52
USP54-210ENST00000466048 TRBV27A0A0K0K1C4 114 aa5.58□□□□□ -1.52
USP54-210ENST00000466048 C9orf85Q96MD7 179 aa5.58□□□□□ -1.52
USP54-210ENST00000466048 CDIP1Q9H305 208 aa5.58□□□□□ -1.52
USP54-210ENST00000466048 CHKB-CPT1BH3BT56 60 aa5.58□□□□□ -1.52
USP54-210ENST00000466048 C5orf38Q86SI9 138 aa5.58□□□□□ -1.52
USP54-210ENST00000466048 LRBAP50851 2863 aa5.58□□□□□ -1.52
USP54-210ENST00000466048 ANGP03950 147 aaKnown RBP5.57□□□□□ -1.52
USP54-210ENST00000466048 RNASE3P12724 160 aaKnown RBP5.57□□□□□ -1.52
USP54-210ENST00000466048 EDN2P20800 178 aa5.57□□□□□ -1.52
USP54-210ENST00000466048 POM121L12Q8N7R1 296 aa5.57□□□□□ -1.52
USP54-210ENST00000466048 ZZEF1O43149 2961 aa5.57□□□□□ -1.52
USP54-210ENST00000466048 KALRNO60229 2985 aa5.57□□□□□ -1.52
USP54-210ENST00000466048 IGLV4-3A0A075B6K6 122 aa5.57□□□□□ -1.52
USP54-210ENST00000466048 DEFB1P60022 68 aa5.57□□□□□ -1.52
USP54-210ENST00000466048 IGKV2D-24A0A075B6R9 120 aa5.57□□□□□ -1.52
USP54-210ENST00000466048 XCL1P47992 114 aa5.57□□□□□ -1.52
USP54-210ENST00000466048 ETDCA0A1B0GVM5 59 aa5.57□□□□□ -1.52
USP54-210ENST00000466048 NRACQ8N912 160 aa5.57□□□□□ -1.52
USP54-210ENST00000466048 BCE1O60756 84 aa5.56□□□□□ -1.52
USP54-210ENST00000466048 CRYGAP11844 174 aa5.56□□□□□ -1.52
USP54-210ENST00000466048 TRBV6-4A0A1B0GX49 114 aa5.56□□□□□ -1.52
USP54-210ENST00000466048 PPDPFQ9H3Y8 114 aa5.56□□□□□ -1.52
USP54-210ENST00000466048 COX7BP24311 80 aa5.56□□□□□ -1.52
USP54-210ENST00000466048 ODF3L2Q3SX64 289 aa5.56□□□□□ -1.52
USP54-210ENST00000466048 LOC107984640A0A0U1RRK4 108 aa5.55□□□□□ -1.52
USP54-210ENST00000466048 SEC61GP60059 68 aa5.55□□□□□ -1.52
USP54-210ENST00000466048 ZNF575Q86XF7 245 aa5.55□□□□□ -1.52
USP54-210ENST00000466048 IGHV4-28A0A0C4DH34 117 aa5.55□□□□□ -1.52
USP54-210ENST00000466048 UBE2AP49459 152 aa5.55□□□□□ -1.52
USP54-210ENST00000466048 BAHCC1Q9P281 2608 aa5.55□□□□□ -1.52
USP54-210ENST00000466048 Q6ZQT7 251 aa5.55□□□□□ -1.52
USP54-210ENST00000466048 MUC7Q8TAX7 377 aa5.55□□□□□ -1.52
USP54-210ENST00000466048 WFDC10AQ9H1F0 79 aa5.55□□□□□ -1.52
USP54-210ENST00000466048 BEAN1Q3B7T3 259 aa5.54□□□□□ -1.52
USP54-210ENST00000466048 IGLV2-18A0A075B6J9 118 aa5.54□□□□□ -1.52
USP54-210ENST00000466048 CDKN2A-AS1Q9UH64 79 aa5.54□□□□□ -1.52
USP54-210ENST00000466048 TRBV10-3A0A0K0K1G6 114 aa5.53□□□□□ -1.52
USP54-210ENST00000466048 FLNCQ14315 2725 aa5.53□□□□□ -1.52
USP54-210ENST00000466048 CCKP06307 115 aa5.53□□□□□ -1.52
USP54-210ENST00000466048 POLR2KP53803 58 aaKnown RBP5.53□□□□□ -1.52
USP54-210ENST00000466048 CLPSL2Q6UWE3 100 aa5.53□□□□□ -1.52
USP54-210ENST00000466048 PRR15LQ9BU68 103 aa5.53□□□□□ -1.52
USP54-210ENST00000466048 KIF25-AS1Q9Y6Z4 181 aa5.53□□□□□ -1.52
USP54-210ENST00000466048 LY6G6CO95867 125 aa5.53□□□□□ -1.52
USP54-210ENST00000466048 PMAIP1Q13794 54 aa5.53□□□□□ -1.52
USP54-210ENST00000466048 NCR3O14931 201 aa5.52□□□□□ -1.53
USP54-210ENST00000466048 A0A096LNJ9 63 aa5.52□□□□□ -1.53
USP54-210ENST00000466048 CAMK2N2Q96S95 79 aa5.52□□□□□ -1.53
USP54-210ENST00000466048 CHCHD7Q9BUK0 85 aa5.52□□□□□ -1.53
USP54-210ENST00000466048 A6NED7 52 aa5.52□□□□□ -1.53
USP54-210ENST00000466048 M0QY20 66 aa5.51□□□□□ -1.53
USP54-210ENST00000466048 NDUFS5O43920 106 aa5.51□□□□□ -1.53
USP54-210ENST00000466048 Q6ZTI0 123 aa5.51□□□□□ -1.53
USP54-210ENST00000466048 DEFB105AQ8NG35 78 aa5.51□□□□□ -1.53
USP54-210ENST00000466048 SNURFQ9Y675 71 aa5.51□□□□□ -1.53
USP54-210ENST00000466048 CENPEQ02224 2701 aa5.51□□□□□ -1.53
USP54-210ENST00000466048 RPL28P46779 137 aaKnown RBP5.5□□□□□ -1.53
USP54-210ENST00000466048 SPAG11BQ08648 103 aa5.5□□□□□ -1.53
USP54-210ENST00000466048 IGIPA6NJ69 53 aa5.5□□□□□ -1.53
USP54-210ENST00000466048 CRYGDP07320 174 aa5.5□□□□□ -1.53
USP54-210ENST00000466048 LINC00315P59091 139 aa5.5□□□□□ -1.53
USP54-210ENST00000466048 A0A0J9YWU9 116 aa5.5□□□□□ -1.53
USP54-210ENST00000466048 DCHS2Q6V1P9 2916 aa5.49□□□□□ -1.53
USP54-210ENST00000466048 PRO0461Q9UI25 63 aa5.49□□□□□ -1.53
USP54-210ENST00000466048 GAS8-AS1O95177 125 aa5.49□□□□□ -1.53
USP54-210ENST00000466048 SBSPONQ8IVN8 264 aa5.49□□□□□ -1.53
USP54-210ENST00000466048 B9D2Q9BPU9 175 aa5.49□□□□□ -1.53
USP54-210ENST00000466048 RETNQ9HD89 108 aa5.49□□□□□ -1.53
USP54-210ENST00000466048 FLNAP21333 2647 aaKnown RBP5.49□□□□□ -1.53
USP54-210ENST00000466048 KPRPQ5T749 579 aaPredicted RBP5.48□□□□□ -1.53
USP54-210ENST00000466048 LELP1Q5T871 98 aa5.48□□□□□ -1.53
USP54-210ENST00000466048 PRYO14603 147 aa5.48□□□□□ -1.53
USP54-210ENST00000466048 CHD6Q8TD26 2715 aa5.48□□□□□ -1.53
USP54-210ENST00000466048 ITPR3Q14573 2671 aa5.47□□□□□ -1.53
USP54-210ENST00000466048 TSHBP01222 138 aa5.47□□□□□ -1.53
USP54-210ENST00000466048 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.47□□□□□ -1.53
USP54-210ENST00000466048 NANOS2P60321 138 aaKnown RBP5.47□□□□□ -1.53
USP54-210ENST00000466048 CEMP1Q6PRD7 247 aaPredicted RBP5.47□□□□□ -1.53
USP54-210ENST00000466048 KMT2BQ9UMN6 2715 aaPredicted RBP5.47□□□□□ -1.53
USP54-210ENST00000466048 ESRGQ1W209 222 aa5.47□□□□□ -1.53
USP54-210ENST00000466048 C11orf72Q8NBR9 251 aa5.47□□□□□ -1.53
USP54-210ENST00000466048 SMIM11BQ8TCY0 68 aa5.47□□□□□ -1.53
USP54-210ENST00000466048 C6orf99Q4VX62 202 aa5.46□□□□□ -1.53
USP54-210ENST00000466048 NTM-AS1Q6ZSK4 140 aa5.46□□□□□ -1.53
USP54-210ENST00000466048 SMG1Q96Q15 3661 aaKnown RBP5.46□□□□□ -1.53
USP54-210ENST00000466048 IGLV10-54A0A075B6I4 117 aa5.46□□□□□ -1.54
USP54-210ENST00000466048 K7ERS5 55 aa5.46□□□□□ -1.54
USP54-210ENST00000466048 SLPIP03973 132 aa5.46□□□□□ -1.54
USP54-210ENST00000466048 KLK12Q9UKR0 248 aa5.46□□□□□ -1.54
USP54-210ENST00000466048 RELNP78509 3460 aa5.46□□□□□ -1.54
USP54-210ENST00000466048 COX17Q14061 63 aa5.45□□□□□ -1.54
USP54-210ENST00000466048 WWC2-AS2Q96NR7 200 aa5.45□□□□□ -1.54
USP54-210ENST00000466048 IGLV4-69A0A075B6H9 119 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms