RNA–Protein interactions for RNA: ENST00000429738.1

MRPL28-203, Transcript of mitochondrial ribosomal protein L28, human

TSL 2 BASIC

Gene MRPL28, Length 310 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL28-203	ENST00000429738	CDKN2A-AS1	Q9UH64	79 aa		10.78	□□□□□ -0.68
MRPL28-203	ENST00000429738		M0QXV9	152 aa		10.77	□□□□□ -0.69
MRPL28-203	ENST00000429738	PRSS2	P07478	247 aa		10.77	□□□□□ -0.69
MRPL28-203	ENST00000429738	ERAS	Q7Z444	233 aa		10.77	□□□□□ -0.69
MRPL28-203	ENST00000429738	GNB1L	Q9BYB4	327 aa		10.77	□□□□□ -0.69
MRPL28-203	ENST00000429738	TOMM7	Q9P0U1	55 aa		10.77	□□□□□ -0.69
MRPL28-203	ENST00000429738	CARHSP1	Q9Y2V2	147 aa	Known RBP	10.77	□□□□□ -0.69
MRPL28-203	ENST00000429738	C6orf226	Q5I0X4	101 aa		10.76	□□□□□ -0.69
MRPL28-203	ENST00000429738	SLC7A5P1	Q8MH63	180 aa		10.76	□□□□□ -0.69
MRPL28-203	ENST00000429738	CKS1B	P61024	79 aa		10.75	□□□□□ -0.69
MRPL28-203	ENST00000429738	DIRC1	Q969H9	104 aa		10.75	□□□□□ -0.69
MRPL28-203	ENST00000429738	ALKBH7	Q9BT30	221 aa	Predicted RBP	10.75	□□□□□ -0.69
MRPL28-203	ENST00000429738	S100P	P25815	95 aa		10.74	□□□□□ -0.69
MRPL28-203	ENST00000429738	SCGB3A1	Q96QR1	104 aa		10.74	□□□□□ -0.69
MRPL28-203	ENST00000429738	GEMIN7	Q9H840	131 aa	Known RBP	10.74	□□□□□ -0.69
MRPL28-203	ENST00000429738	LINC01549	A6NIU2	74 aa		10.73	□□□□□ -0.69
MRPL28-203	ENST00000429738		H0Y9J4	135 aa		10.73	□□□□□ -0.69
MRPL28-203	ENST00000429738	IGLV5-45	A0A087WSX0	123 aa		10.72	□□□□□ -0.69
MRPL28-203	ENST00000429738	SMIM1	B2RUZ4	78 aa		10.72	□□□□□ -0.69
MRPL28-203	ENST00000429738		F8VRH5	84 aa		10.72	□□□□□ -0.69
MRPL28-203	ENST00000429738	UBE2B	P63146	152 aa		10.72	□□□□□ -0.69
MRPL28-203	ENST00000429738	COX19	Q49B96	90 aa		10.72	□□□□□ -0.69
MRPL28-203	ENST00000429738	TINCR	A0A1B0GVN0	87 aa		10.71	□□□□□ -0.69
MRPL28-203	ENST00000429738	APOC3	P02656	99 aa		10.71	□□□□□ -0.69
MRPL28-203	ENST00000429738	CXCL5	P42830	114 aa		10.71	□□□□□ -0.69
MRPL28-203	ENST00000429738	LINC00469	Q8N7U9	141 aa		10.7	□□□□□ -0.7
MRPL28-203	ENST00000429738	KRTAP1-4	P0C5Y4	121 aa		10.69	□□□□□ -0.7
MRPL28-203	ENST00000429738	PDZD11	Q5EBL8	140 aa		10.69	□□□□□ -0.7
MRPL28-203	ENST00000429738	MRPL18	Q9H0U6	180 aa	Known RBP	10.69	□□□□□ -0.7
MRPL28-203	ENST00000429738	XAGE1A	Q9HD64	81 aa		10.69	□□□□□ -0.7
MRPL28-203	ENST00000429738	RHEB	Q15382	184 aa		10.68	□□□□□ -0.7
MRPL28-203	ENST00000429738	PRR26	Q8N8Z3	221 aa		10.68	□□□□□ -0.7
MRPL28-203	ENST00000429738	CST9L	Q9H4G1	147 aa		10.68	□□□□□ -0.7
MRPL28-203	ENST00000429738	RPS10P5	Q9NQ39	176 aa		10.68	□□□□□ -0.7
MRPL28-203	ENST00000429738	C22orf24	Q9Y442	160 aa		10.68	□□□□□ -0.7
MRPL28-203	ENST00000429738	FABP9	Q0Z7S8	132 aa		10.66	□□□□□ -0.7
MRPL28-203	ENST00000429738	PMVK	Q15126	192 aa		10.66	□□□□□ -0.7
MRPL28-203	ENST00000429738	NDUFA5	Q16718	116 aa		10.66	□□□□□ -0.7
MRPL28-203	ENST00000429738	FA2H	Q7L5A8	372 aa		10.66	□□□□□ -0.7
MRPL28-203	ENST00000429738	SVBP	Q8N300	66 aa		10.66	□□□□□ -0.7
MRPL28-203	ENST00000429738	COX7B2	Q8TF08	81 aa		10.66	□□□□□ -0.7
MRPL28-203	ENST00000429738	TP73-AS1	Q9UF72	201 aa		10.66	□□□□□ -0.7
MRPL28-203	ENST00000429738	IGLV1-50	A0A075B6I6	118 aa		10.64	□□□□□ -0.71
MRPL28-203	ENST00000429738		A0A096LNJ9	63 aa		10.64	□□□□□ -0.71
MRPL28-203	ENST00000429738	NUPR1	O60356	82 aa		10.64	□□□□□ -0.71
MRPL28-203	ENST00000429738	SNAPIN	O95295	136 aa		10.64	□□□□□ -0.71
MRPL28-203	ENST00000429738	LBH	Q53QV2	105 aa	Predicted RBP	10.64	□□□□□ -0.71
MRPL28-203	ENST00000429738	SMCO4	Q9NRQ5	59 aa		10.64	□□□□□ -0.71
MRPL28-203	ENST00000429738	ZNF861P	O60384	105 aa		10.63	□□□□□ -0.71
MRPL28-203	ENST00000429738	SPINK8	P0C7L1	97 aa		10.63	□□□□□ -0.71
MRPL28-203	ENST00000429738	URB1-AS1	Q96HZ7	61 aa		10.63	□□□□□ -0.71
MRPL28-203	ENST00000429738	MRPL55	Q7Z7F7	128 aa	Known RBP	10.62	□□□□□ -0.71
MRPL28-203	ENST00000429738	IGLC3	P0DOY3	106 aa		10.61	□□□□□ -0.71
MRPL28-203	ENST00000429738	C18orf32	Q8TCD1	76 aa		10.61	□□□□□ -0.71
MRPL28-203	ENST00000429738	IGLV5-39	A0A0G2JS06	123 aa		10.59	□□□□□ -0.71
MRPL28-203	ENST00000429738	LINC00614	P0C842	121 aa		10.59	□□□□□ -0.71
MRPL28-203	ENST00000429738	MUC2	Q02817	5179 aa		10.59	□□□□□ -0.71
MRPL28-203	ENST00000429738	IGLV5-37	A0A075B6J1	123 aa		10.58	□□□□□ -0.72
MRPL28-203	ENST00000429738		H3BRM9	83 aa		10.58	□□□□□ -0.72
MRPL28-203	ENST00000429738	LINC00167	Q96N53	147 aa		10.58	□□□□□ -0.72
MRPL28-203	ENST00000429738	TRAPPC1	Q9Y5R8	145 aa		10.58	□□□□□ -0.72
MRPL28-203	ENST00000429738	ZNF22	P17026	224 aa	Predicted RBP	10.57	□□□□□ -0.72
MRPL28-203	ENST00000429738	RPL13A	P40429	203 aa	Known RBP	10.57	□□□□□ -0.72
MRPL28-203	ENST00000429738	HBD	P02042	147 aa		10.56	□□□□□ -0.72
MRPL28-203	ENST00000429738	RAB5B	P61020	215 aa		10.56	□□□□□ -0.72
MRPL28-203	ENST00000429738	BCE1	O60756	84 aa		10.55	□□□□□ -0.72
MRPL28-203	ENST00000429738	ATP5L	O75964	103 aa		10.55	□□□□□ -0.72
MRPL28-203	ENST00000429738	YPEL4	Q96NS1	127 aa		10.55	□□□□□ -0.72
MRPL28-203	ENST00000429738	PMCHL1	Q16048	86 aa		10.54	□□□□□ -0.72
MRPL28-203	ENST00000429738	CBLN2	Q8IUK8	224 aa		10.54	□□□□□ -0.72
MRPL28-203	ENST00000429738	KRTAP9-2	Q9BYQ4	174 aa		10.54	□□□□□ -0.72
MRPL28-203	ENST00000429738	RPL37AP8	A6NKH3	93 aa		10.53	□□□□□ -0.72
MRPL28-203	ENST00000429738	NDUFA6	P56556	154 aa		10.53	□□□□□ -0.72
MRPL28-203	ENST00000429738	RPL28	P46779	137 aa	Known RBP	10.52	□□□□□ -0.73
MRPL28-203	ENST00000429738	GAGE10	A6NGK3	116 aa		10.51	□□□□□ -0.73
MRPL28-203	ENST00000429738	KRTAP13-1	Q8IUC0	172 aa		10.51	□□□□□ -0.73
MRPL28-203	ENST00000429738		A0A0U1RQV1	116 aa		10.5	□□□□□ -0.73
MRPL28-203	ENST00000429738	C11orf86	A6NJI1	115 aa		10.5	□□□□□ -0.73
MRPL28-203	ENST00000429738	PFN2	P35080	140 aa		10.5	□□□□□ -0.73
MRPL28-203	ENST00000429738	NKAPP1	Q8N9T2	125 aa		10.5	□□□□□ -0.73
MRPL28-203	ENST00000429738	ERG28	Q9UKR5	140 aa		10.5	□□□□□ -0.73
MRPL28-203	ENST00000429738		A0A087X002	238 aa		10.49	□□□□□ -0.73
MRPL28-203	ENST00000429738	COX17	Q14061	63 aa		10.49	□□□□□ -0.73
MRPL28-203	ENST00000429738	PRR4	Q16378	134 aa		10.49	□□□□□ -0.73
MRPL28-203	ENST00000429738	BAGE3	Q86Y29	109 aa		10.49	□□□□□ -0.73
MRPL28-203	ENST00000429738	VPREB1	P12018	145 aa		10.48	□□□□□ -0.73
MRPL28-203	ENST00000429738	SND1-IT1	Q9HBX3	110 aa		10.48	□□□□□ -0.73
MRPL28-203	ENST00000429738	SCO1	O75880	301 aa		10.47	□□□□□ -0.73
MRPL28-203	ENST00000429738	TMEM170B	Q5T4T1	132 aa		10.47	□□□□□ -0.73
MRPL28-203	ENST00000429738	SFTA2	Q6UW10	78 aa		10.46	□□□□□ -0.73
MRPL28-203	ENST00000429738	ZNF625	Q96I27	306 aa	Predicted RBP	10.46	□□□□□ -0.73
MRPL28-203	ENST00000429738	IGKV2-28	A0A075B6P5	120 aa		10.45	□□□□□ -0.74
MRPL28-203	ENST00000429738	IGKV2D-28	P01615	120 aa		10.45	□□□□□ -0.74
MRPL28-203	ENST00000429738		Q8NDZ9	215 aa		10.44	□□□□□ -0.74
MRPL28-203	ENST00000429738	CHCHD1	Q96BP2	118 aa	Known RBP	10.44	□□□□□ -0.74
MRPL28-203	ENST00000429738	CHTOP	Q9Y3Y2	248 aa	Known RBP	10.44	□□□□□ -0.74
MRPL28-203	ENST00000429738	TRAV12-1	A0A0B4J245	112 aa		10.43	□□□□□ -0.74
MRPL28-203	ENST00000429738	CRYGA	P11844	174 aa		10.43	□□□□□ -0.74
MRPL28-203	ENST00000429738	UBE2A	P49459	152 aa		10.43	□□□□□ -0.74
MRPL28-203	ENST00000429738	TMEM223	A0PJW6	202 aa		10.42	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 70 ms