RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 PKIGQ9Y2B9 76 aa9.27□□□□□ -0.92
PTPRN-202ENST00000409251 LINC00337Q8N6G1 96 aa9.27□□□□□ -0.93
PTPRN-202ENST00000409251 SMIM11BQ8TCY0 68 aa9.27□□□□□ -0.93
PTPRN-202ENST00000409251 C1orf43Q9BWL3 253 aa9.27□□□□□ -0.93
PTPRN-202ENST00000409251 BAHCC1Q9P281 2608 aa9.27□□□□□ -0.93
PTPRN-202ENST00000409251 RPL35AP18077 110 aaKnown RBP9.27□□□□□ -0.93
PTPRN-202ENST00000409251 FAM19A1Q7Z5A9 133 aa9.27□□□□□ -0.93
PTPRN-202ENST00000409251 CCL24O00175 119 aa9.26□□□□□ -0.93
PTPRN-202ENST00000409251 KRTAP1-1Q07627 177 aa9.26□□□□□ -0.93
PTPRN-202ENST00000409251 FAM104AQ969W3 186 aa9.26□□□□□ -0.93
PTPRN-202ENST00000409251 NBEAL1Q6ZS30 2694 aa9.26□□□□□ -0.93
PTPRN-202ENST00000409251 SMIM1B2RUZ4 78 aa9.26□□□□□ -0.93
PTPRN-202ENST00000409251 F5H768 121 aa9.26□□□□□ -0.93
PTPRN-202ENST00000409251 TMEM243Q9BU79 118 aa9.26□□□□□ -0.93
PTPRN-202ENST00000409251 IMUPQ9GZP8 106 aa9.26□□□□□ -0.93
PTPRN-202ENST00000409251 SNURFQ9Y675 71 aa9.25□□□□□ -0.93
PTPRN-202ENST00000409251 LOC100131303A0A0U1RQF7 123 aa9.25□□□□□ -0.93
PTPRN-202ENST00000409251 K7EQG2 157 aa9.25□□□□□ -0.93
PTPRN-202ENST00000409251 C6orf226Q5I0X4 101 aa9.25□□□□□ -0.93
PTPRN-202ENST00000409251 PYGO1Q9Y3Y4 419 aa9.25□□□□□ -0.93
PTPRN-202ENST00000409251 FBN1P35555 2871 aaKnown RBP9.25□□□□□ -0.93
PTPRN-202ENST00000409251 ANK3Q12955 4377 aaKnown RBP9.24□□□□□ -0.93
PTPRN-202ENST00000409251 Q6ZTI0 123 aa9.24□□□□□ -0.93
PTPRN-202ENST00000409251 SCXQ7RTU7 201 aa9.24□□□□□ -0.93
PTPRN-202ENST00000409251 XCL1P47992 114 aa9.24□□□□□ -0.93
PTPRN-202ENST00000409251 COPS9Q8WXC6 57 aa9.24□□□□□ -0.93
PTPRN-202ENST00000409251 NOP10Q9NPE3 64 aaKnown RBP9.23□□□□□ -0.93
PTPRN-202ENST00000409251 TRAV13-2A0A0B4J235 113 aa9.23□□□□□ -0.93
PTPRN-202ENST00000409251 K7EMT4 169 aa9.23□□□□□ -0.93
PTPRN-202ENST00000409251 SERP2Q8N6R1 65 aa9.23□□□□□ -0.93
PTPRN-202ENST00000409251 DPH3Q96FX2 82 aa9.23□□□□□ -0.93
PTPRN-202ENST00000409251 A0A0U1RQV1 116 aa9.22□□□□□ -0.93
PTPRN-202ENST00000409251 RBMY1BA6NDE4 496 aaKnown RBP9.22□□□□□ -0.93
PTPRN-202ENST00000409251 RBMY1EA6NEQ0 496 aaKnown RBP9.22□□□□□ -0.93
PTPRN-202ENST00000409251 RBMY1DP0C7P1 496 aaKnown RBP9.22□□□□□ -0.93
PTPRN-202ENST00000409251 LAMTOR3Q9UHA4 124 aa9.22□□□□□ -0.93
PTPRN-202ENST00000409251 IGLV10-54A0A075B6I4 117 aa9.2□□□□□ -0.94
PTPRN-202ENST00000409251 A8MTW9 85 aa9.2□□□□□ -0.94
PTPRN-202ENST00000409251 KLK9Q2XQG4 91 aa9.2□□□□□ -0.94
PTPRN-202ENST00000409251 PF4P02776 101 aa9.2□□□□□ -0.94
PTPRN-202ENST00000409251 STHQ8IWL8 128 aa9.2□□□□□ -0.94
PTPRN-202ENST00000409251 SPATA3Q8NHX4 192 aa9.2□□□□□ -0.94
PTPRN-202ENST00000409251 MGAM2Q2M2H8 2515 aa9.2□□□□□ -0.94
PTPRN-202ENST00000409251 TRGV4A0A0C4DH28 118 aa9.2□□□□□ -0.94
PTPRN-202ENST00000409251 DEFB114Q30KQ6 69 aa9.2□□□□□ -0.94
PTPRN-202ENST00000409251 COX7B2Q8TF08 81 aa9.2□□□□□ -0.94
PTPRN-202ENST00000409251 C4orf3Q8WVX3 66 aa9.2□□□□□ -0.94
PTPRN-202ENST00000409251 DEFB130BP0DP73 79 aa9.19□□□□□ -0.94
PTPRN-202ENST00000409251 DEFB130AP0DP74 79 aa9.19□□□□□ -0.94
PTPRN-202ENST00000409251 FHL2Q14192 279 aa9.19□□□□□ -0.94
PTPRN-202ENST00000409251 PRB2P02812 416 aaPredicted RBP9.19□□□□□ -0.94
PTPRN-202ENST00000409251 CCL18P55774 89 aa9.19□□□□□ -0.94
PTPRN-202ENST00000409251 LINC01561Q8N1V8 128 aa9.19□□□□□ -0.94
PTPRN-202ENST00000409251 MAP6D1Q9H9H5 199 aa9.19□□□□□ -0.94
PTPRN-202ENST00000409251 OXTP01178 125 aa9.19□□□□□ -0.94
PTPRN-202ENST00000409251 C2orf48Q96LS8 159 aa9.19□□□□□ -0.94
PTPRN-202ENST00000409251 DEFB121Q5J5C9 76 aa9.18□□□□□ -0.94
PTPRN-202ENST00000409251 ORMDL1Q9P0S3 153 aa9.18□□□□□ -0.94
PTPRN-202ENST00000409251 INSP01308 110 aa9.18□□□□□ -0.94
PTPRN-202ENST00000409251 CRYGAP11844 174 aa9.18□□□□□ -0.94
PTPRN-202ENST00000409251 RPL28P46779 137 aaKnown RBP9.18□□□□□ -0.94
PTPRN-202ENST00000409251 TIMM17BO60830 172 aa9.16□□□□□ -0.94
PTPRN-202ENST00000409251 PKD1L1Q8TDX9 2849 aa9.16□□□□□ -0.94
PTPRN-202ENST00000409251 IGKV2-28A0A075B6P5 120 aa9.16□□□□□ -0.94
PTPRN-202ENST00000409251 IGKV2D-28P01615 120 aa9.16□□□□□ -0.94
PTPRN-202ENST00000409251 HTN3P15516 51 aa9.16□□□□□ -0.94
PTPRN-202ENST00000409251 RBM3P98179 157 aaKnown RBP9.16□□□□□ -0.94
PTPRN-202ENST00000409251 ODF3L2Q3SX64 289 aa9.16□□□□□ -0.94
PTPRN-202ENST00000409251 TMEM258P61165 79 aa9.16□□□□□ -0.94
PTPRN-202ENST00000409251 NTM-AS1Q6ZSK4 140 aa9.16□□□□□ -0.94
PTPRN-202ENST00000409251 UBL5Q9BZL1 73 aa9.16□□□□□ -0.94
PTPRN-202ENST00000409251 UPK3BQ9BT76 320 aa9.15□□□□□ -0.94
PTPRN-202ENST00000409251 DEFB4AO15263 64 aa9.14□□□□□ -0.95
PTPRN-202ENST00000409251 DAD1P61803 113 aa9.14□□□□□ -0.95
PTPRN-202ENST00000409251 MPLKIPQ8TAP9 179 aa9.14□□□□□ -0.95
PTPRN-202ENST00000409251 C22orf24Q9Y442 160 aa9.14□□□□□ -0.95
PTPRN-202ENST00000409251 IGLV4-60A0A075B6I1 120 aa9.14□□□□□ -0.95
PTPRN-202ENST00000409251 MRAPQ8TCY5 172 aa9.14□□□□□ -0.95
PTPRN-202ENST00000409251 S100A7L2Q5SY68 101 aa9.14□□□□□ -0.95
PTPRN-202ENST00000409251 KRTAP10-3P60369 221 aa9.13□□□□□ -0.95
PTPRN-202ENST00000409251 C9orf116Q5BN46 136 aaPredicted RBP9.13□□□□□ -0.95
PTPRN-202ENST00000409251 TMEM86BQ8N661 226 aa9.13□□□□□ -0.95
PTPRN-202ENST00000409251 LINC00482Q8N8I6 264 aa9.13□□□□□ -0.95
PTPRN-202ENST00000409251 BRK1Q8WUW1 75 aa9.13□□□□□ -0.95
PTPRN-202ENST00000409251 K7EQD1 137 aa9.13□□□□□ -0.95
PTPRN-202ENST00000409251 CDC42SE2Q9NRR3 84 aa9.13□□□□□ -0.95
PTPRN-202ENST00000409251 TMEM89A2RUT3 159 aa9.12□□□□□ -0.95
PTPRN-202ENST00000409251 BEAN1Q3B7T3 259 aa9.12□□□□□ -0.95
PTPRN-202ENST00000409251 TRAV25A0A0B4J276 109 aa9.12□□□□□ -0.95
PTPRN-202ENST00000409251 IGLV5-39A0A0G2JS06 123 aa9.11□□□□□ -0.95
PTPRN-202ENST00000409251 FAM236DA0A1B0GTK5 79 aa9.11□□□□□ -0.95
PTPRN-202ENST00000409251 FAM236CP0DP71 79 aa9.11□□□□□ -0.95
PTPRN-202ENST00000409251 RMI2Q96E14 147 aa9.11□□□□□ -0.95
PTPRN-202ENST00000409251 H0YGX0 51 aa9.1□□□□□ -0.95
PTPRN-202ENST00000409251 Q6JHZ5 121 aa9.1□□□□□ -0.95
PTPRN-202ENST00000409251 C6orf99Q4VX62 202 aa9.09□□□□□ -0.95
PTPRN-202ENST00000409251 FAM222AQ5U5X8 452 aa9.09□□□□□ -0.96
PTPRN-202ENST00000409251 OVOL2Q9BRP0 275 aa9.08□□□□□ -0.96
PTPRN-202ENST00000409251 LRCOL1A6NCL2 159 aa9.07□□□□□ -0.96
PTPRN-202ENST00000409251 F8WEM9 126 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms