RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 M0QXV9 152 aa9.26□□□□□ -0.93
CCDC3-202ENST00000378839 C9orf66Q5T8R8 295 aa9.26□□□□□ -0.93
CCDC3-202ENST00000378839 CLPSL2Q6UWE3 100 aa9.26□□□□□ -0.93
CCDC3-202ENST00000378839 CELA1Q9UNI1 258 aa9.26□□□□□ -0.93
CCDC3-202ENST00000378839 TRBV10-2A0A0K0K1G8 114 aa9.25□□□□□ -0.93
CCDC3-202ENST00000378839 LINC01600Q96MT4 127 aa9.25□□□□□ -0.93
CCDC3-202ENST00000378839 LST1O00453 97 aa9.25□□□□□ -0.93
CCDC3-202ENST00000378839 A0A087WZ39 114 aa9.24□□□□□ -0.93
CCDC3-202ENST00000378839 IGHV4-28A0A0C4DH34 117 aa9.24□□□□□ -0.93
CCDC3-202ENST00000378839 SMIM9A6NGZ8 99 aa9.24□□□□□ -0.93
CCDC3-202ENST00000378839 MIR7-3HGQ8N6C7 128 aa9.24□□□□□ -0.93
CCDC3-202ENST00000378839 PRO0255Q9UI72 69 aa9.24□□□□□ -0.93
CCDC3-202ENST00000378839 IGKV2-28A0A075B6P5 120 aa9.23□□□□□ -0.93
CCDC3-202ENST00000378839 IGKV2D-28P01615 120 aa9.23□□□□□ -0.93
CCDC3-202ENST00000378839 XCL1P47992 114 aa9.22□□□□□ -0.93
CCDC3-202ENST00000378839 OXLD1Q5BKU9 147 aa9.22□□□□□ -0.93
CCDC3-202ENST00000378839 LINC00337Q8N6G1 96 aa9.22□□□□□ -0.93
CCDC3-202ENST00000378839 CMYA5Q8N3K9 4069 aa9.22□□□□□ -0.93
CCDC3-202ENST00000378839 PAX4O43316 350 aa9.22□□□□□ -0.93
CCDC3-202ENST00000378839 Q8NAQ8 132 aa9.22□□□□□ -0.93
CCDC3-202ENST00000378839 C11orf68Q9H3H3 251 aaKnown RBP9.22□□□□□ -0.93
CCDC3-202ENST00000378839 FAM218AQ96MZ4 157 aa9.21□□□□□ -0.93
CCDC3-202ENST00000378839 A0A1B0GUV1 79 aa9.2□□□□□ -0.94
CCDC3-202ENST00000378839 COX6CP09669 75 aa9.2□□□□□ -0.94
CCDC3-202ENST00000378839 C9orf153Q5TBE3 101 aa9.2□□□□□ -0.94
CCDC3-202ENST00000378839 LYRM9A8MSI8 78 aa9.2□□□□□ -0.94
CCDC3-202ENST00000378839 CCL18P55774 89 aa9.19□□□□□ -0.94
CCDC3-202ENST00000378839 PFN2P35080 140 aa9.19□□□□□ -0.94
CCDC3-202ENST00000378839 COX7A2LO14548 114 aa9.18□□□□□ -0.94
CCDC3-202ENST00000378839 LINC00158P58513 81 aa9.18□□□□□ -0.94
CCDC3-202ENST00000378839 LINC00269Q8N2A0 174 aa9.18□□□□□ -0.94
CCDC3-202ENST00000378839 C22orf24Q9Y442 160 aa9.18□□□□□ -0.94
CCDC3-202ENST00000378839 IGHV4-30-4P0DP06 118 aa9.17□□□□□ -0.94
CCDC3-202ENST00000378839 SND1-IT1Q9HBX3 110 aa9.17□□□□□ -0.94
CCDC3-202ENST00000378839 WFDC9Q8NEX5 89 aa9.17□□□□□ -0.94
CCDC3-202ENST00000378839 APOC4P55056 127 aa9.16□□□□□ -0.94
CCDC3-202ENST00000378839 IGLV10-54A0A075B6I4 117 aa9.16□□□□□ -0.94
CCDC3-202ENST00000378839 DAD1P61803 113 aa9.16□□□□□ -0.94
CCDC3-202ENST00000378839 FBN1P35555 2871 aaKnown RBP9.16□□□□□ -0.94
CCDC3-202ENST00000378839 H3BT86 120 aa9.16□□□□□ -0.94
CCDC3-202ENST00000378839 IBA57-AS1B1ANH7 110 aa9.15□□□□□ -0.94
CCDC3-202ENST00000378839 KIAA0087Q14695 138 aa9.14□□□□□ -0.95
CCDC3-202ENST00000378839 SS18Q15532 418 aa9.14□□□□□ -0.95
CCDC3-202ENST00000378839 C6orf226Q5I0X4 101 aa9.14□□□□□ -0.95
CCDC3-202ENST00000378839 COPS9Q8WXC6 57 aa9.14□□□□□ -0.95
CCDC3-202ENST00000378839 PKD1L1Q8TDX9 2849 aa9.14□□□□□ -0.95
CCDC3-202ENST00000378839 HTN3P15516 51 aa9.14□□□□□ -0.95
CCDC3-202ENST00000378839 SMIM11BQ8TCY0 68 aa9.13□□□□□ -0.95
CCDC3-202ENST00000378839 KRTAP10-11P60412 298 aa9.13□□□□□ -0.95
CCDC3-202ENST00000378839 CHCHD10Q8WYQ3 142 aaPredicted RBP9.13□□□□□ -0.95
CCDC3-202ENST00000378839 WIPF1O43516 503 aa9.12□□□□□ -0.95
CCDC3-202ENST00000378839 MIFP14174 115 aa9.12□□□□□ -0.95
CCDC3-202ENST00000378839 RPL28P46779 137 aaKnown RBP9.12□□□□□ -0.95
CCDC3-202ENST00000378839 ANGP03950 147 aaKnown RBP9.12□□□□□ -0.95
CCDC3-202ENST00000378839 ATP5G1P05496 136 aa9.12□□□□□ -0.95
CCDC3-202ENST00000378839 PRR3P79522 188 aaKnown RBP9.12□□□□□ -0.95
CCDC3-202ENST00000378839 DEFB121Q5J5C9 76 aa9.12□□□□□ -0.95
CCDC3-202ENST00000378839 GAGE2AQ6NT46 116 aa9.12□□□□□ -0.95
CCDC3-202ENST00000378839 Q8IZM0 81 aa9.12□□□□□ -0.95
CCDC3-202ENST00000378839 Q9HAA7 133 aa9.12□□□□□ -0.95
CCDC3-202ENST00000378839 RETNQ9HD89 108 aa9.12□□□□□ -0.95
CCDC3-202ENST00000378839 F8P00451 2351 aa9.12□□□□□ -0.95
CCDC3-202ENST00000378839 REG3AQ06141 175 aa9.12□□□□□ -0.95
CCDC3-202ENST00000378839 C9orf116Q5BN46 136 aaPredicted RBP9.12□□□□□ -0.95
CCDC3-202ENST00000378839 TRAV13-2A0A0B4J235 113 aa9.11□□□□□ -0.95
CCDC3-202ENST00000378839 CRPP02741 224 aa9.11□□□□□ -0.95
CCDC3-202ENST00000378839 A0A087WYN8 130 aa9.11□□□□□ -0.95
CCDC3-202ENST00000378839 Q8NDZ9 215 aa9.11□□□□□ -0.95
CCDC3-202ENST00000378839 SMCR5Q8TEV8 140 aa9.11□□□□□ -0.95
CCDC3-202ENST00000378839 CD164L2Q6UWJ8 174 aa9.1□□□□□ -0.95
CCDC3-202ENST00000378839 hADV29S1A0JD25 119 aa9.1□□□□□ -0.95
CCDC3-202ENST00000378839 IGKV3D-7A0A0C4DH55 119 aa9.1□□□□□ -0.95
CCDC3-202ENST00000378839 SPART-AS1P0CW21 52 aa9.1□□□□□ -0.95
CCDC3-202ENST00000378839 LINC00526Q96FQ7 95 aa9.09□□□□□ -0.95
CCDC3-202ENST00000378839 TRACP01848 142 aa9.08□□□□□ -0.96
CCDC3-202ENST00000378839 C9orf129Q5T035 196 aaKnown RBP9.08□□□□□ -0.96
CCDC3-202ENST00000378839 C6orf223Q8N319 242 aa9.08□□□□□ -0.96
CCDC3-202ENST00000378839 DNAH3Q8TD57 4116 aa9.08□□□□□ -0.96
CCDC3-202ENST00000378839 SDIM1Q6ZPB5 146 aa9.08□□□□□ -0.96
CCDC3-202ENST00000378839 BAALC-AS2P0C853 105 aa9.08□□□□□ -0.96
CCDC3-202ENST00000378839 C10orf25Q5T742 122 aa9.08□□□□□ -0.96
CCDC3-202ENST00000378839 TENM3Q9P273 2699 aa9.07□□□□□ -0.96
CCDC3-202ENST00000378839 NANOS2P60321 138 aaKnown RBP9.07□□□□□ -0.96
CCDC3-202ENST00000378839 FAM19A5Q7Z5A7 132 aaPredicted RBP9.07□□□□□ -0.96
CCDC3-202ENST00000378839 LINC01561Q8N1V8 128 aa9.07□□□□□ -0.96
CCDC3-202ENST00000378839 CYSTM1Q9H1C7 97 aa9.07□□□□□ -0.96
CCDC3-202ENST00000378839 A0A087WVE0 104 aa9.06□□□□□ -0.96
CCDC3-202ENST00000378839 LELP1Q5T871 98 aa9.06□□□□□ -0.96
CCDC3-202ENST00000378839 ENHOQ6UWT2 76 aa9.06□□□□□ -0.96
CCDC3-202ENST00000378839 Q6Q795 121 aa9.05□□□□□ -0.96
CCDC3-202ENST00000378839 LYPD5Q6UWN5 251 aa9.05□□□□□ -0.96
CCDC3-202ENST00000378839 KRTAP24-1Q3LI83 254 aa9.04□□□□□ -0.96
CCDC3-202ENST00000378839 DSCR8Q96T75 97 aa9.04□□□□□ -0.96
CCDC3-202ENST00000378839 KLK12Q9UKR0 248 aa9.04□□□□□ -0.96
CCDC3-202ENST00000378839 OR13C6PQ8NH95 151 aa9.04□□□□□ -0.96
CCDC3-202ENST00000378839 PRR34Q9NV39 138 aa9.04□□□□□ -0.96
CCDC3-202ENST00000378839 UNQ6190/PRO20217Q6UXQ8 127 aa9.04□□□□□ -0.96
CCDC3-202ENST00000378839 STAB1Q9NY15 2570 aa9.04□□□□□ -0.96
CCDC3-202ENST00000378839 MALP21145 153 aa9.03□□□□□ -0.96
CCDC3-202ENST00000378839 C3orf22Q8N5N4 141 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms