RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 SHISA2Q6UWI4 295 aa12.27□□□□□ -0.44
PTPRU-202ENST00000373779 DHRS4-AS1Q9P1J3 65 aa12.27□□□□□ -0.45
PTPRU-202ENST00000373779 SOSTDC1Q6X4U4 206 aa12.27□□□□□ -0.45
PTPRU-202ENST00000373779 MPLKIPQ8TAP9 179 aa12.27□□□□□ -0.45
PTPRU-202ENST00000373779 LINC01561Q8N1V8 128 aa12.26□□□□□ -0.45
PTPRU-202ENST00000373779 TRAV7A0A075B6U4 112 aa12.26□□□□□ -0.45
PTPRU-202ENST00000373779 FAM19A1Q7Z5A9 133 aa12.25□□□□□ -0.45
PTPRU-202ENST00000373779 LITAFQ99732 161 aa12.25□□□□□ -0.45
PTPRU-202ENST00000373779 IGHV3OR16-9A0A0B4J2B5 98 aa12.25□□□□□ -0.45
PTPRU-202ENST00000373779 USP9XQ93008 2570 aaPredicted RBP12.25□□□□□ -0.45
PTPRU-202ENST00000373779 FAM19A3Q7Z5A8 133 aa12.24□□□□□ -0.45
PTPRU-202ENST00000373779 H0Y9J4 135 aa12.24□□□□□ -0.45
PTPRU-202ENST00000373779 EGFEM1PQ0D2K5 195 aa12.23□□□□□ -0.45
PTPRU-202ENST00000373779 FAM218AQ96MZ4 157 aa12.23□□□□□ -0.45
PTPRU-202ENST00000373779 B9D2Q9BPU9 175 aa12.23□□□□□ -0.45
PTPRU-202ENST00000373779 C6orf223Q8N319 242 aa12.22□□□□□ -0.45
PTPRU-202ENST00000373779 IGHV4-30-4P0DP06 118 aa12.22□□□□□ -0.45
PTPRU-202ENST00000373779 LINC00575Q6W349 94 aa12.21□□□□□ -0.45
PTPRU-202ENST00000373779 ABCA2Q9BZC7 2435 aa12.21□□□□□ -0.46
PTPRU-202ENST00000373779 C14orf177Q52M58 125 aa12.21□□□□□ -0.46
PTPRU-202ENST00000373779 RPL37AP8A6NKH3 93 aa12.19□□□□□ -0.46
PTPRU-202ENST00000373779 USP9YO00507 2555 aaPredicted RBP12.19□□□□□ -0.46
PTPRU-202ENST00000373779 BRCA2P51587 3418 aa12.18□□□□□ -0.46
PTPRU-202ENST00000373779 MKI67P46013 3256 aaKnown RBP12.18□□□□□ -0.46
PTPRU-202ENST00000373779 TLN2Q9Y4G6 2542 aa12.17□□□□□ -0.46
PTPRU-202ENST00000373779 TRAV10A0A0B4J240 114 aa12.17□□□□□ -0.46
PTPRU-202ENST00000373779 SMR3AQ99954 134 aa12.17□□□□□ -0.46
PTPRU-202ENST00000373779 A8MTW9 85 aa12.16□□□□□ -0.46
PTPRU-202ENST00000373779 FHL3Q13643 280 aa12.16□□□□□ -0.46
PTPRU-202ENST00000373779 WFDC10BQ8IUB3 73 aa12.15□□□□□ -0.46
PTPRU-202ENST00000373779 Q8N3U1 123 aa12.15□□□□□ -0.46
PTPRU-202ENST00000373779 SERP1Q9Y6X1 66 aa12.15□□□□□ -0.46
PTPRU-202ENST00000373779 A0A096LNI7 61 aa12.14□□□□□ -0.47
PTPRU-202ENST00000373779 Q6ZVQ6 151 aa12.14□□□□□ -0.47
PTPRU-202ENST00000373779 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.14□□□□□ -0.47
PTPRU-202ENST00000373779 TRANK1O15050 2925 aa12.14□□□□□ -0.47
PTPRU-202ENST00000373779 NANOS2P60321 138 aaKnown RBP12.13□□□□□ -0.47
PTPRU-202ENST00000373779 LOC107984640A0A0U1RRK4 108 aa12.12□□□□□ -0.47
PTPRU-202ENST00000373779 FAM30AQ9NZY2 134 aa12.12□□□□□ -0.47
PTPRU-202ENST00000373779 SMIM26A0A096LP01 95 aa12.12□□□□□ -0.47
PTPRU-202ENST00000373779 HRCT1Q6UXD1 115 aa12.12□□□□□ -0.47
PTPRU-202ENST00000373779 LINC01547P58512 204 aaPredicted RBP12.11□□□□□ -0.47
PTPRU-202ENST00000373779 A0A0J9YWU9 116 aa12.11□□□□□ -0.47
PTPRU-202ENST00000373779 MYO18BQ8IUG5 2567 aa12.1□□□□□ -0.47
PTPRU-202ENST00000373779 WFDC13Q8IUB5 93 aa12.1□□□□□ -0.47
PTPRU-202ENST00000373779 CRYGAP11844 174 aa12.1□□□□□ -0.47
PTPRU-202ENST00000373779 RETNQ9HD89 108 aa12.1□□□□□ -0.47
PTPRU-202ENST00000373779 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.1□□□□□ -0.47
PTPRU-202ENST00000373779 OXLD1Q5BKU9 147 aa12.1□□□□□ -0.47
PTPRU-202ENST00000373779 ABCA12Q86UK0 2595 aa12.09□□□□□ -0.47
PTPRU-202ENST00000373779 CHKB-CPT1BH3BT56 60 aa12.09□□□□□ -0.47
PTPRU-202ENST00000373779 LYPD5Q6UWN5 251 aa12.09□□□□□ -0.47
PTPRU-202ENST00000373779 CELA1Q9UNI1 258 aa12.09□□□□□ -0.47
PTPRU-202ENST00000373779 RANBP2P49792 3224 aaKnown RBP12.09□□□□□ -0.47
PTPRU-202ENST00000373779 CHD8Q9HCK8 2581 aa12.08□□□□□ -0.48
PTPRU-202ENST00000373779 C1orf137Q5JT78 98 aa12.08□□□□□ -0.48
PTPRU-202ENST00000373779 ZNF575Q86XF7 245 aa12.08□□□□□ -0.48
PTPRU-202ENST00000373779 PPDPFQ9H3Y8 114 aa12.07□□□□□ -0.48
PTPRU-202ENST00000373779 SETD2Q9BYW2 2564 aaPredicted RBP12.07□□□□□ -0.48
PTPRU-202ENST00000373779 C2orf48Q96LS8 159 aa12.07□□□□□ -0.48
PTPRU-202ENST00000373779 Q6ZTC4 211 aa12.07□□□□□ -0.48
PTPRU-202ENST00000373779 MUC4Q99102 2169 aa12.06□□□□□ -0.48
PTPRU-202ENST00000373779 A0A0U1RQV1 116 aa12.06□□□□□ -0.48
PTPRU-202ENST00000373779 FN1P02751 2386 aaKnown RBP12.05□□□□□ -0.48
PTPRU-202ENST00000373779 FSHBP01225 129 aa12.05□□□□□ -0.48
PTPRU-202ENST00000373779 IGKV4-1P06312 121 aa12.05□□□□□ -0.48
PTPRU-202ENST00000373779 CXCL6P80162 114 aa12.05□□□□□ -0.48
PTPRU-202ENST00000373779 EIF4EBP3O60516 100 aaPredicted RBP12.05□□□□□ -0.48
PTPRU-202ENST00000373779 Q6ZRU5 148 aa12.04□□□□□ -0.48
PTPRU-202ENST00000373779 F8WDY8 70 aa12.03□□□□□ -0.48
PTPRU-202ENST00000373779 PRYO14603 147 aa12.03□□□□□ -0.48
PTPRU-202ENST00000373779 PRR4Q16378 134 aa12.03□□□□□ -0.48
PTPRU-202ENST00000373779 SMCR5Q8TEV8 140 aa12.03□□□□□ -0.48
PTPRU-202ENST00000373779 SPTBN4Q9H254 2564 aa12.03□□□□□ -0.48
PTPRU-202ENST00000373779 V9GYY9 64 aa12.01□□□□□ -0.49
PTPRU-202ENST00000373779 LAMA3Q16787 3333 aa12.01□□□□□ -0.49
PTPRU-202ENST00000373779 SPATA3Q8NHX4 192 aa12□□□□□ -0.49
PTPRU-202ENST00000373779 X6R8D5 127 aa12□□□□□ -0.49
PTPRU-202ENST00000373779 TMEM254Q8TBM7 123 aa11.99□□□□□ -0.49
PTPRU-202ENST00000373779 REG3GQ6UW15 175 aa11.99□□□□□ -0.49
PTPRU-202ENST00000373779 C10orf25Q5T742 122 aa11.98□□□□□ -0.49
PTPRU-202ENST00000373779 SVIPQ8NHG7 77 aa11.98□□□□□ -0.49
PTPRU-202ENST00000373779 C6orf48Q9UBA6 75 aa11.97□□□□□ -0.49
PTPRU-202ENST00000373779 Q6ZQT0 140 aa11.96□□□□□ -0.49
PTPRU-202ENST00000373779 NHLRC4P0CG21 123 aaPredicted RBP11.96□□□□□ -0.5
PTPRU-202ENST00000373779 SPTSSBQ8NFR3 76 aa11.96□□□□□ -0.5
PTPRU-202ENST00000373779 MRPL55Q7Z7F7 128 aaKnown RBP11.95□□□□□ -0.5
PTPRU-202ENST00000373779 ANKRD17O75179 2603 aaKnown RBP11.95□□□□□ -0.5
PTPRU-202ENST00000373779 PLAC8L1A1L4L8 177 aa11.95□□□□□ -0.5
PTPRU-202ENST00000373779 BCE1O60756 84 aa11.95□□□□□ -0.5
PTPRU-202ENST00000373779 LAMA2P24043 3122 aaKnown RBP11.94□□□□□ -0.5
PTPRU-202ENST00000373779 LOC110117498A0A087WWA1 95 aa11.94□□□□□ -0.5
PTPRU-202ENST00000373779 POLQO75417 2590 aa11.94□□□□□ -0.5
PTPRU-202ENST00000373779 Q8N9L7 120 aa11.94□□□□□ -0.5
PTPRU-202ENST00000373779 RPS28P62857 69 aaKnown RBP11.93□□□□□ -0.5
PTPRU-202ENST00000373779 IL17DQ8TAD2 202 aa11.93□□□□□ -0.5
PTPRU-202ENST00000373779 DOPEY1Q5JWR5 2465 aa11.93□□□□□ -0.5
PTPRU-202ENST00000373779 ELOF1P60002 83 aaKnown RBP11.91□□□□□ -0.5
PTPRU-202ENST00000373779 TRBV7-6A0A0J9YX20 115 aa11.9□□□□□ -0.5
PTPRU-202ENST00000373779 ZNF462Q96JM2 2506 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms