RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 XCL1P47992 114 aa11.4□□□□□ -0.58
SDC4-201ENST00000372733 HIST1H4AP62805 103 aaKnown RBP11.4□□□□□ -0.58
SDC4-201ENST00000372733 C6orf226Q5I0X4 101 aa11.4□□□□□ -0.58
SDC4-201ENST00000372733 CLPSL2Q6UWE3 100 aa11.4□□□□□ -0.58
SDC4-201ENST00000372733 KRTAP1-3Q8IUG1 177 aa11.4□□□□□ -0.58
SDC4-201ENST00000372733 C2orf48Q96LS8 159 aa11.39□□□□□ -0.59
SDC4-201ENST00000372733 COX7CP15954 63 aa11.39□□□□□ -0.59
SDC4-201ENST00000372733 UBR5O95071 2799 aaPredicted RBP11.39□□□□□ -0.59
SDC4-201ENST00000372733 DEFB130BP0DP73 79 aa11.39□□□□□ -0.59
SDC4-201ENST00000372733 DEFB130AP0DP74 79 aa11.39□□□□□ -0.59
SDC4-201ENST00000372733 A0A087WVE0 104 aa11.37□□□□□ -0.59
SDC4-201ENST00000372733 LY6G6DO95868 133 aa11.37□□□□□ -0.59
SDC4-201ENST00000372733 SS18Q15532 418 aa11.37□□□□□ -0.59
SDC4-201ENST00000372733 ATOX1O00244 68 aa11.37□□□□□ -0.59
SDC4-201ENST00000372733 Q6JHZ5 121 aa11.37□□□□□ -0.59
SDC4-201ENST00000372733 APCP25054 2843 aa11.36□□□□□ -0.59
SDC4-201ENST00000372733 IGLV1-51P01701 117 aa11.36□□□□□ -0.59
SDC4-201ENST00000372733 FN1P02751 2386 aaKnown RBP11.36□□□□□ -0.59
SDC4-201ENST00000372733 PRR3P79522 188 aaKnown RBP11.36□□□□□ -0.59
SDC4-201ENST00000372733 CMC4P56277 68 aaPredicted RBP11.35□□□□□ -0.59
SDC4-201ENST00000372733 ORMDL1Q9P0S3 153 aa11.35□□□□□ -0.59
SDC4-201ENST00000372733 GYPEP15421 78 aa11.35□□□□□ -0.59
SDC4-201ENST00000372733 RPL18AQ02543 176 aaKnown RBP11.35□□□□□ -0.59
SDC4-201ENST00000372733 FLNAP21333 2647 aaKnown RBP11.34□□□□□ -0.59
SDC4-201ENST00000372733 A0A096LPF7 62 aa11.34□□□□□ -0.59
SDC4-201ENST00000372733 CYSTM1Q9H1C7 97 aa11.34□□□□□ -0.59
SDC4-201ENST00000372733 TENM4Q6N022 2769 aa11.33□□□□□ -0.6
SDC4-201ENST00000372733 WFDC11Q8NEX6 87 aa11.33□□□□□ -0.6
SDC4-201ENST00000372733 LINC01006Q8NI28 216 aa11.33□□□□□ -0.6
SDC4-201ENST00000372733 hADV29S1A0JD25 119 aa11.33□□□□□ -0.6
SDC4-201ENST00000372733 NANOS2P60321 138 aaKnown RBP11.33□□□□□ -0.6
SDC4-201ENST00000372733 ZNF843Q8N446 348 aa11.33□□□□□ -0.6
SDC4-201ENST00000372733 A0A1B0GX51 115 aa11.32□□□□□ -0.6
SDC4-201ENST00000372733 Q8IZM0 81 aa11.32□□□□□ -0.6
SDC4-201ENST00000372733 CRYGAP11844 174 aa11.31□□□□□ -0.6
SDC4-201ENST00000372733 LINC01561Q8N1V8 128 aa11.31□□□□□ -0.6
SDC4-201ENST00000372733 LOC107984640A0A0U1RRK4 108 aa11.3□□□□□ -0.6
SDC4-201ENST00000372733 MTORP42345 2549 aa11.29□□□□□ -0.6
SDC4-201ENST00000372733 GCN1Q92616 2671 aaKnown RBP11.29□□□□□ -0.6
SDC4-201ENST00000372733 CCKP06307 115 aa11.28□□□□□ -0.6
SDC4-201ENST00000372733 LINC00167Q96N53 147 aa11.28□□□□□ -0.6
SDC4-201ENST00000372733 USP17L23D6RBM5 183 aa11.27□□□□□ -0.6
SDC4-201ENST00000372733 Q8N3U1 123 aa11.27□□□□□ -0.6
SDC4-201ENST00000372733 Q8N814 137 aa11.27□□□□□ -0.6
SDC4-201ENST00000372733 NBEAL2Q6ZNJ1 2754 aa11.27□□□□□ -0.6
SDC4-201ENST00000372733 A0A1B0GUV1 79 aa11.27□□□□□ -0.61
SDC4-201ENST00000372733 C9orf116Q5BN46 136 aaPredicted RBP11.27□□□□□ -0.61
SDC4-201ENST00000372733 IGLV10-54A0A075B6I4 117 aa11.26□□□□□ -0.61
SDC4-201ENST00000372733 KIR2DL5BQ8NHK3 375 aa11.26□□□□□ -0.61
SDC4-201ENST00000372733 KIAA0087Q14695 138 aa11.25□□□□□ -0.61
SDC4-201ENST00000372733 LINC00269Q8N2A0 174 aa11.25□□□□□ -0.61
SDC4-201ENST00000372733 SERP2Q8N6R1 65 aa11.25□□□□□ -0.61
SDC4-201ENST00000372733 LINC00612Q8N6U2 182 aa11.25□□□□□ -0.61
SDC4-201ENST00000372733 Q8NDZ9 215 aa11.25□□□□□ -0.61
SDC4-201ENST00000372733 ACANP16112 2415 aa11.25□□□□□ -0.61
SDC4-201ENST00000372733 HILS1P60008 231 aa11.25□□□□□ -0.61
SDC4-201ENST00000372733 WFDC9Q8NEX5 89 aa11.25□□□□□ -0.61
SDC4-201ENST00000372733 CFAP161Q6P656 301 aa11.24□□□□□ -0.61
SDC4-201ENST00000372733 RNASE1P07998 156 aaKnown RBP11.23□□□□□ -0.61
SDC4-201ENST00000372733 UPK3BQ9BT76 320 aa11.23□□□□□ -0.61
SDC4-201ENST00000372733 HELZ2Q9BYK8 2649 aaKnown RBP11.23□□□□□ -0.61
SDC4-201ENST00000372733 JMJD7-PLA2G4BH0Y9G9 81 aa11.22□□□□□ -0.61
SDC4-201ENST00000372733 J3KT08 172 aa11.22□□□□□ -0.61
SDC4-201ENST00000372733 C6orf99Q4VX62 202 aa11.22□□□□□ -0.61
SDC4-201ENST00000372733 CHCHD10Q8WYQ3 142 aaPredicted RBP11.22□□□□□ -0.61
SDC4-201ENST00000372733 PRO0255Q9UI72 69 aa11.22□□□□□ -0.61
SDC4-201ENST00000372733 C16orf95Q9H693 158 aa11.22□□□□□ -0.61
SDC4-201ENST00000372733 X6R8D5 127 aa11.22□□□□□ -0.61
SDC4-201ENST00000372733 NDUFC2O95298 119 aa11.22□□□□□ -0.61
SDC4-201ENST00000372733 TMEM256-PLSCR3K7ERE1 68 aa11.21□□□□□ -0.61
SDC4-201ENST00000372733 CD164L2Q6UWJ8 174 aa11.21□□□□□ -0.61
SDC4-201ENST00000372733 ITPR2Q14571 2701 aa11.21□□□□□ -0.62
SDC4-201ENST00000372733 ANGP03950 147 aaKnown RBP11.2□□□□□ -0.62
SDC4-201ENST00000372733 ANK3Q12955 4377 aaKnown RBP11.2□□□□□ -0.62
SDC4-201ENST00000372733 FAM19A1Q7Z5A9 133 aa11.2□□□□□ -0.62
SDC4-201ENST00000372733 DEFB4AO15263 64 aa11.19□□□□□ -0.62
SDC4-201ENST00000372733 KRTAP1-1Q07627 177 aa11.19□□□□□ -0.62
SDC4-201ENST00000372733 COX17Q14061 63 aa11.19□□□□□ -0.62
SDC4-201ENST00000372733 REG3AQ06141 175 aa11.18□□□□□ -0.62
SDC4-201ENST00000372733 S100A7L2Q5SY68 101 aa11.18□□□□□ -0.62
SDC4-201ENST00000372733 TRAV23DV6A0A075B6W5 121 aa11.18□□□□□ -0.62
SDC4-201ENST00000372733 ENHOQ6UWT2 76 aa11.18□□□□□ -0.62
SDC4-201ENST00000372733 NOTCH2Q04721 2471 aa11.16□□□□□ -0.62
SDC4-201ENST00000372733 C10orf25Q5T742 122 aa11.16□□□□□ -0.62
SDC4-201ENST00000372733 FAM19A5Q7Z5A7 132 aaPredicted RBP11.16□□□□□ -0.62
SDC4-201ENST00000372733 C6orf223Q8N319 242 aa11.16□□□□□ -0.62
SDC4-201ENST00000372733 IGHV4-28A0A0C4DH34 117 aa11.16□□□□□ -0.62
SDC4-201ENST00000372733 GHRHP01286 108 aa11.16□□□□□ -0.62
SDC4-201ENST00000372733 ATP5EP2Q5VTU8 51 aa11.16□□□□□ -0.62
SDC4-201ENST00000372733 LINC00575Q6W349 94 aa11.16□□□□□ -0.62
SDC4-201ENST00000372733 TMEM258P61165 79 aa11.15□□□□□ -0.62
SDC4-201ENST00000372733 LINC00482Q8N8I6 264 aa11.15□□□□□ -0.62
SDC4-201ENST00000372733 UNQ6190/PRO20217Q6UXQ8 127 aa11.14□□□□□ -0.63
SDC4-201ENST00000372733 DSCR8Q96T75 97 aa11.14□□□□□ -0.63
SDC4-201ENST00000372733 UBL5Q9BZL1 73 aa11.14□□□□□ -0.63
SDC4-201ENST00000372733 HECTD1Q9ULT8 2610 aa11.13□□□□□ -0.63
SDC4-201ENST00000372733 SPATA3Q8NHX4 192 aa11.13□□□□□ -0.63
SDC4-201ENST00000372733 M0R2N4 97 aa11.12□□□□□ -0.63
SDC4-201ENST00000372733 KRTAP10-3P60369 221 aa11.12□□□□□ -0.63
SDC4-201ENST00000372733 SPAG11BQ08648 103 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms