RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CYSRT1A8MQ03 144 aa13.73□□□□□ -0.21
USP48-201ENST00000308271 FHL3Q13643 280 aa13.73□□□□□ -0.21
USP48-201ENST00000308271 FAM19A1Q7Z5A9 133 aa13.73□□□□□ -0.21
USP48-201ENST00000308271 C11orf72Q8NBR9 251 aa13.73□□□□□ -0.21
USP48-201ENST00000308271 TRBV10-3A0A0K0K1G6 114 aa13.72□□□□□ -0.21
USP48-201ENST00000308271 RPS28P62857 69 aaKnown RBP13.71□□□□□ -0.21
USP48-201ENST00000308271 UNQ6190/PRO20217Q6UXQ8 127 aa13.71□□□□□ -0.21
USP48-201ENST00000308271 SYCNQ0VAF6 134 aa13.71□□□□□ -0.21
USP48-201ENST00000308271 FHL2Q14192 279 aa13.71□□□□□ -0.21
USP48-201ENST00000308271 LINC01006Q8NI28 216 aa13.71□□□□□ -0.21
USP48-201ENST00000308271 LITAFQ99732 161 aa13.7□□□□□ -0.22
USP48-201ENST00000308271 Q8N3U1 123 aa13.7□□□□□ -0.22
USP48-201ENST00000308271 SOSTDC1Q6X4U4 206 aa13.7□□□□□ -0.22
USP48-201ENST00000308271 LINC00482Q8N8I6 264 aa13.69□□□□□ -0.22
USP48-201ENST00000308271 C9orf116Q5BN46 136 aaPredicted RBP13.69□□□□□ -0.22
USP48-201ENST00000308271 KIR2DL5BQ8NHK3 375 aa13.69□□□□□ -0.22
USP48-201ENST00000308271 V9GYY9 64 aa13.69□□□□□ -0.22
USP48-201ENST00000308271 A0A1B0GUV1 79 aa13.68□□□□□ -0.22
USP48-201ENST00000308271 ACANP16112 2415 aa13.68□□□□□ -0.22
USP48-201ENST00000308271 FAM218AQ96MZ4 157 aa13.68□□□□□ -0.22
USP48-201ENST00000308271 LINC01561Q8N1V8 128 aa13.68□□□□□ -0.22
USP48-201ENST00000308271 DHRS4-AS1Q9P1J3 65 aa13.68□□□□□ -0.22
USP48-201ENST00000308271 HILS1P60008 231 aa13.66□□□□□ -0.22
USP48-201ENST00000308271 IGHV3OR16-9A0A0B4J2B5 98 aa13.66□□□□□ -0.22
USP48-201ENST00000308271 UBE2AP49459 152 aa13.66□□□□□ -0.22
USP48-201ENST00000308271 LINC00575Q6W349 94 aa13.65□□□□□ -0.22
USP48-201ENST00000308271 Q6ZVQ6 151 aa13.65□□□□□ -0.22
USP48-201ENST00000308271 A0A0C4DFX4 3053 aa13.64□□□□□ -0.23
USP48-201ENST00000308271 H0Y9J4 135 aa13.64□□□□□ -0.23
USP48-201ENST00000308271 HIGD2AQ9BW72 106 aa13.64□□□□□ -0.23
USP48-201ENST00000308271 NHLRC4P0CG21 123 aaPredicted RBP13.64□□□□□ -0.23
USP48-201ENST00000308271 IGKV2-28A0A075B6P5 120 aa13.63□□□□□ -0.23
USP48-201ENST00000308271 IGKV2D-28P01615 120 aa13.63□□□□□ -0.23
USP48-201ENST00000308271 IGLV1-51P01701 117 aa13.63□□□□□ -0.23
USP48-201ENST00000308271 Q9UF83 564 aa13.63□□□□□ -0.23
USP48-201ENST00000308271 LINC01547P58512 204 aaPredicted RBP13.62□□□□□ -0.23
USP48-201ENST00000308271 COL27A1Q8IZC6 1860 aaPredicted RBP13.61□□□□□ -0.23
USP48-201ENST00000308271 C1orf195Q5TG92 126 aa13.61□□□□□ -0.23
USP48-201ENST00000308271 EGFEM1PQ0D2K5 195 aa13.61□□□□□ -0.23
USP48-201ENST00000308271 BCE1O60756 84 aa13.6□□□□□ -0.23
USP48-201ENST00000308271 HECTD1Q9ULT8 2610 aa13.6□□□□□ -0.23
USP48-201ENST00000308271 C11orf45Q8TAV5 145 aa13.59□□□□□ -0.23
USP48-201ENST00000308271 PRYO14603 147 aa13.59□□□□□ -0.23
USP48-201ENST00000308271 CXCL6P80162 114 aa13.58□□□□□ -0.24
USP48-201ENST00000308271 SPTSSBQ8NFR3 76 aa13.58□□□□□ -0.24
USP48-201ENST00000308271 TMEM254Q8TBM7 123 aa13.57□□□□□ -0.24
USP48-201ENST00000308271 IGKV2-24A0A0C4DH68 120 aa13.56□□□□□ -0.24
USP48-201ENST00000308271 CHKB-CPT1BH3BT56 60 aa13.56□□□□□ -0.24
USP48-201ENST00000308271 FAM30AQ9NZY2 134 aa13.56□□□□□ -0.24
USP48-201ENST00000308271 DEFB131BA0A096LNP1 70 aa13.56□□□□□ -0.24
USP48-201ENST00000308271 WFDC10BQ8IUB3 73 aa13.56□□□□□ -0.24
USP48-201ENST00000308271 CELA1Q9UNI1 258 aa13.56□□□□□ -0.24
USP48-201ENST00000308271 RANBP2P49792 3224 aaKnown RBP13.56□□□□□ -0.24
USP48-201ENST00000308271 CHD7Q9P2D1 2997 aa13.56□□□□□ -0.24
USP48-201ENST00000308271 KPRPQ5T749 579 aaPredicted RBP13.55□□□□□ -0.24
USP48-201ENST00000308271 MUC4Q99102 2169 aa13.55□□□□□ -0.24
USP48-201ENST00000308271 B9D2Q9BPU9 175 aa13.54□□□□□ -0.24
USP48-201ENST00000308271 WFDC13Q8IUB5 93 aa13.53□□□□□ -0.24
USP48-201ENST00000308271 PRR4Q16378 134 aa13.53□□□□□ -0.24
USP48-201ENST00000308271 SMCR5Q8TEV8 140 aa13.53□□□□□ -0.24
USP48-201ENST00000308271 MRPL55Q7Z7F7 128 aaKnown RBP13.52□□□□□ -0.25
USP48-201ENST00000308271 A8MTW9 85 aa13.51□□□□□ -0.25
USP48-201ENST00000308271 C6orf223Q8N319 242 aa13.5□□□□□ -0.25
USP48-201ENST00000308271 TRBV7-6A0A0J9YX20 115 aa13.5□□□□□ -0.25
USP48-201ENST00000308271 C1orf137Q5JT78 98 aa13.49□□□□□ -0.25
USP48-201ENST00000308271 PRO0628Q9UI54 55 aa13.49□□□□□ -0.25
USP48-201ENST00000308271 PLA2G2AP14555 144 aa13.48□□□□□ -0.25
USP48-201ENST00000308271 C14orf177Q52M58 125 aa13.48□□□□□ -0.25
USP48-201ENST00000308271 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.48□□□□□ -0.25
USP48-201ENST00000308271 RPL37AP8A6NKH3 93 aa13.47□□□□□ -0.25
USP48-201ENST00000308271 IGKV4-1P06312 121 aa13.47□□□□□ -0.25
USP48-201ENST00000308271 F8P00451 2351 aa13.46□□□□□ -0.25
USP48-201ENST00000308271 A0A096LNI7 61 aa13.45□□□□□ -0.26
USP48-201ENST00000308271 EIF4EBP3O60516 100 aaPredicted RBP13.45□□□□□ -0.26
USP48-201ENST00000308271 C5orf42Q9H799 3197 aa13.44□□□□□ -0.26
USP48-201ENST00000308271 SPATA3Q8NHX4 192 aa13.44□□□□□ -0.26
USP48-201ENST00000308271 C4orf26Q17RF5 130 aa13.44□□□□□ -0.26
USP48-201ENST00000308271 ESRGQ1W209 222 aa13.42□□□□□ -0.26
USP48-201ENST00000308271 ZNF575Q86XF7 245 aa13.42□□□□□ -0.26
USP48-201ENST00000308271 LRCOL1A6NCL2 159 aa13.42□□□□□ -0.26
USP48-201ENST00000308271 INAFM1C9JVW0 142 aa13.42□□□□□ -0.26
USP48-201ENST00000308271 Q6ZQT0 140 aa13.42□□□□□ -0.26
USP48-201ENST00000308271 LOC110117498A0A087WWA1 95 aa13.4□□□□□ -0.26
USP48-201ENST00000308271 C2orf48Q96LS8 159 aa13.4□□□□□ -0.26
USP48-201ENST00000308271 A6NED7 52 aa13.39□□□□□ -0.27
USP48-201ENST00000308271 C16orf95Q9H693 158 aa13.39□□□□□ -0.27
USP48-201ENST00000308271 F8WDY8 70 aa13.39□□□□□ -0.27
USP48-201ENST00000308271 KRTAP10-9P60411 292 aa13.39□□□□□ -0.27
USP48-201ENST00000308271 HTTP42858 3142 aa13.38□□□□□ -0.27
USP48-201ENST00000308271 LINC00208Q96KT6 92 aa13.38□□□□□ -0.27
USP48-201ENST00000308271 LINC01600Q96MT4 127 aa13.37□□□□□ -0.27
USP48-201ENST00000308271 IGHV4-30-4P0DP06 118 aa13.36□□□□□ -0.27
USP48-201ENST00000308271 TRAV10A0A0B4J240 114 aa13.35□□□□□ -0.27
USP48-201ENST00000308271 Q8N9L7 120 aa13.35□□□□□ -0.27
USP48-201ENST00000308271 CHD9Q3L8U1 2897 aa13.33□□□□□ -0.28
USP48-201ENST00000308271 Q6ZRU5 148 aa13.32□□□□□ -0.28
USP48-201ENST00000308271 LYPD5Q6UWN5 251 aa13.31□□□□□ -0.28
USP48-201ENST00000308271 LY6G6DO95868 133 aa13.31□□□□□ -0.28
USP48-201ENST00000308271 A0A0J9YWU9 116 aa13.31□□□□□ -0.28
USP48-201ENST00000308271 PMAIP1Q13794 54 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 939.6 ms