RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 GAGE12IP0CL82 117 aa9.03□□□□□ -0.96
LINC00540-203ENST00000631321 PRIMA1Q86XR5 153 aa9.03□□□□□ -0.96
LINC00540-203ENST00000631321 CITED1Q99966 193 aa9.03□□□□□ -0.96
LINC00540-203ENST00000631321 WFDC10AQ9H1F0 79 aa9.03□□□□□ -0.96
LINC00540-203ENST00000631321 ANK3Q12955 4377 aaKnown RBP9.02□□□□□ -0.96
LINC00540-203ENST00000631321 TRGV2A0A075B6R0 118 aa9.02□□□□□ -0.97
LINC00540-203ENST00000631321 SHISA2Q6UWI4 295 aa9.02□□□□□ -0.97
LINC00540-203ENST00000631321 RPL35AP18077 110 aaKnown RBP9.02□□□□□ -0.97
LINC00540-203ENST00000631321 DEFB121Q5J5C9 76 aa9.02□□□□□ -0.97
LINC00540-203ENST00000631321 WNK1Q9H4A3 2382 aa9.01□□□□□ -0.97
LINC00540-203ENST00000631321 LOC100131303A0A0U1RQF7 123 aa9.01□□□□□ -0.97
LINC00540-203ENST00000631321 MEIG1Q5JSS6 88 aa9.01□□□□□ -0.97
LINC00540-203ENST00000631321 NF1P21359 2839 aa9.01□□□□□ -0.97
LINC00540-203ENST00000631321 TRAV8-4A0A0B4J246 113 aa9□□□□□ -0.97
LINC00540-203ENST00000631321 COX7A2LO14548 114 aa9□□□□□ -0.97
LINC00540-203ENST00000631321 FLNAP21333 2647 aaKnown RBP9□□□□□ -0.97
LINC00540-203ENST00000631321 FHL2Q14192 279 aa9□□□□□ -0.97
LINC00540-203ENST00000631321 TRGV4A0A0C4DH28 118 aa8.99□□□□□ -0.97
LINC00540-203ENST00000631321 A0A0U1RRA0 63 aa8.99□□□□□ -0.97
LINC00540-203ENST00000631321 CCDC168Q8NDH2 2452 aa8.98□□□□□ -0.97
LINC00540-203ENST00000631321 SETXQ7Z333 2677 aaKnown RBP8.98□□□□□ -0.97
LINC00540-203ENST00000631321 TRBV6-8A0A0A6YYG3 113 aa8.98□□□□□ -0.97
LINC00540-203ENST00000631321 FAM240AA0A1B0GVK7 77 aa8.98□□□□□ -0.97
LINC00540-203ENST00000631321 GAGE6Q13070 117 aa8.97□□□□□ -0.97
LINC00540-203ENST00000631321 COX7B2Q8TF08 81 aa8.97□□□□□ -0.97
LINC00540-203ENST00000631321 HILS1P60008 231 aa8.96□□□□□ -0.97
LINC00540-203ENST00000631321 CUBNO60494 3623 aa8.96□□□□□ -0.97
LINC00540-203ENST00000631321 JMJD1CQ15652 2540 aa8.96□□□□□ -0.97
LINC00540-203ENST00000631321 C2CD3Q4AC94 2353 aa8.96□□□□□ -0.97
LINC00540-203ENST00000631321 IGLV4-60A0A075B6I1 120 aa8.96□□□□□ -0.98
LINC00540-203ENST00000631321 SNCGO76070 127 aa8.96□□□□□ -0.98
LINC00540-203ENST00000631321 PF4P02776 101 aa8.96□□□□□ -0.98
LINC00540-203ENST00000631321 PLA2G2AP14555 144 aa8.96□□□□□ -0.98
LINC00540-203ENST00000631321 MRPL23Q16540 153 aaKnown RBP8.96□□□□□ -0.98
LINC00540-203ENST00000631321 FAM222AQ5U5X8 452 aa8.96□□□□□ -0.98
LINC00540-203ENST00000631321 HIST2H2BCQ6DN03 193 aa8.96□□□□□ -0.98
LINC00540-203ENST00000631321 NOTCH3Q9UM47 2321 aa8.96□□□□□ -0.98
LINC00540-203ENST00000631321 IGHV3OR16-9A0A0B4J2B5 98 aa8.95□□□□□ -0.98
LINC00540-203ENST00000631321 TRACP01848 142 aa8.95□□□□□ -0.98
LINC00540-203ENST00000631321 Q6Q795 121 aa8.95□□□□□ -0.98
LINC00540-203ENST00000631321 LINC00612Q8N6U2 182 aa8.95□□□□□ -0.98
LINC00540-203ENST00000631321 CRLF1O75462 422 aa8.95□□□□□ -0.98
LINC00540-203ENST00000631321 NIPBLQ6KC79 2804 aaeCLIP8.95□□□□□ -0.98
LINC00540-203ENST00000631321 KIR2DL5BQ8NHK3 375 aa8.94□□□□□ -0.98
LINC00540-203ENST00000631321 TRAV13-2A0A0B4J235 113 aa8.94□□□□□ -0.98
LINC00540-203ENST00000631321 A0A087WZ39 114 aa8.93□□□□□ -0.98
LINC00540-203ENST00000631321 GAGE2BQ13066 116 aa8.93□□□□□ -0.98
LINC00540-203ENST00000631321 GAGE2EQ4V326 116 aa8.93□□□□□ -0.98
LINC00540-203ENST00000631321 CHCHD5Q9BSY4 110 aa8.93□□□□□ -0.98
LINC00540-203ENST00000631321 GAGE2DQ9UEU5 116 aa8.93□□□□□ -0.98
LINC00540-203ENST00000631321 PDZD2O15018 2839 aa8.93□□□□□ -0.98
LINC00540-203ENST00000631321 SETD2Q9BYW2 2564 aaPredicted RBP8.93□□□□□ -0.98
LINC00540-203ENST00000631321 C15orf53Q8NAA6 179 aa8.93□□□□□ -0.98
LINC00540-203ENST00000631321 RPL28P46779 137 aaKnown RBP8.92□□□□□ -0.98
LINC00540-203ENST00000631321 MIR7-3HGQ8N6C7 128 aa8.92□□□□□ -0.98
LINC00540-203ENST00000631321 IGKV2-28A0A075B6P5 120 aa8.91□□□□□ -0.98
LINC00540-203ENST00000631321 IBA57-AS1B1ANH7 110 aa8.91□□□□□ -0.98
LINC00540-203ENST00000631321 IGKV2D-28P01615 120 aa8.91□□□□□ -0.98
LINC00540-203ENST00000631321 TOMM7Q9P0U1 55 aa8.91□□□□□ -0.98
LINC00540-203ENST00000631321 IGKV3OR2-268A0A0C4DH90 116 aa8.9□□□□□ -0.98
LINC00540-203ENST00000631321 LINC00959A0A1B0GUT2 108 aa8.9□□□□□ -0.98
LINC00540-203ENST00000631321 CRPP02741 224 aa8.9□□□□□ -0.98
LINC00540-203ENST00000631321 LINC00337Q8N6G1 96 aa8.9□□□□□ -0.98
LINC00540-203ENST00000631321 FAM218AQ96MZ4 157 aa8.9□□□□□ -0.98
LINC00540-203ENST00000631321 ANAPC13Q9BS18 74 aa8.9□□□□□ -0.98
LINC00540-203ENST00000631321 SND1-IT1Q9HBX3 110 aa8.9□□□□□ -0.98
LINC00540-203ENST00000631321 TRAV26-1A0A087WT03 109 aa8.9□□□□□ -0.99
LINC00540-203ENST00000631321 KRTAP10-3P60369 221 aa8.9□□□□□ -0.99
LINC00540-203ENST00000631321 LINC00482Q8N8I6 264 aa8.9□□□□□ -0.99
LINC00540-203ENST00000631321 ACANP16112 2415 aa8.9□□□□□ -0.99
LINC00540-203ENST00000631321 MTORP42345 2549 aa8.89□□□□□ -0.99
LINC00540-203ENST00000631321 TENM4Q6N022 2769 aa8.89□□□□□ -0.99
LINC00540-203ENST00000631321 ACYP1P07311 99 aa8.89□□□□□ -0.99
LINC00540-203ENST00000631321 C22orf24Q9Y442 160 aa8.89□□□□□ -0.99
LINC00540-203ENST00000631321 A0A1B0GUV1 79 aa8.89□□□□□ -0.99
LINC00540-203ENST00000631321 NHLRC4P0CG21 123 aaPredicted RBP8.89□□□□□ -0.99
LINC00540-203ENST00000631321 DEFB130BP0DP73 79 aa8.89□□□□□ -0.99
LINC00540-203ENST00000631321 DEFB130AP0DP74 79 aa8.89□□□□□ -0.99
LINC00540-203ENST00000631321 CCL18P55774 89 aa8.89□□□□□ -0.99
LINC00540-203ENST00000631321 BAALC-AS2P0C853 105 aa8.88□□□□□ -0.99
LINC00540-203ENST00000631321 NDUFV3P56181 108 aaKnown RBP8.88□□□□□ -0.99
LINC00540-203ENST00000631321 LINC00158P58513 81 aa8.88□□□□□ -0.99
LINC00540-203ENST00000631321 X6R8D5 127 aa8.88□□□□□ -0.99
LINC00540-203ENST00000631321 SMIM9A6NGZ8 99 aa8.88□□□□□ -0.99
LINC00540-203ENST00000631321 GYPEP15421 78 aa8.88□□□□□ -0.99
LINC00540-203ENST00000631321 C5orf38Q86SI9 138 aa8.88□□□□□ -0.99
LINC00540-203ENST00000631321 LINC01561Q8N1V8 128 aa8.87□□□□□ -0.99
LINC00540-203ENST00000631321 TTC32Q5I0X7 151 aa8.86□□□□□ -0.99
LINC00540-203ENST00000631321 TRBV7-7A0A0K0K1E9 115 aa8.85□□□□□ -0.99
LINC00540-203ENST00000631321 SMIM11BQ8TCY0 68 aa8.85□□□□□ -0.99
LINC00540-203ENST00000631321 PRO0255Q9UI72 69 aa8.85□□□□□ -0.99
LINC00540-203ENST00000631321 SS18Q15532 418 aa8.84□□□□□ -0.99
LINC00540-203ENST00000631321 H0YGX0 51 aa8.84□□□□□ -0.99
LINC00540-203ENST00000631321 SDIM1Q6ZPB5 146 aa8.84□□□□□ -0.99
LINC00540-203ENST00000631321 Q8IZM0 81 aa8.84□□□□□ -0.99
LINC00540-203ENST00000631321 LYRM9A8MSI8 78 aa8.83□□□□□ -1
LINC00540-203ENST00000631321 C6orf226Q5I0X4 101 aa8.83□□□□□ -1
LINC00540-203ENST00000631321 MALP21145 153 aa8.83□□□□□ -1
LINC00540-203ENST00000631321 LY6G6DO95868 133 aa8.82□□□□□ -1
LINC00540-203ENST00000631321 INAFM2P0DMQ5 153 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms