RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 CFAP54Q96N23 3096 aa10.13□□□□□ -0.79
CIITA-213ENST00000618327 POLR2KP53803 58 aaKnown RBP10.13□□□□□ -0.79
CIITA-213ENST00000618327 C20orf197Q8N268 126 aa10.13□□□□□ -0.79
CIITA-213ENST00000618327 C14orf132Q9NPU4 83 aa10.13□□□□□ -0.79
CIITA-213ENST00000618327 TNRC18O15417 2968 aaPredicted RBP10.12□□□□□ -0.79
CIITA-213ENST00000618327 IGKV2D-26A0A0A0MRZ7 120 aa10.12□□□□□ -0.79
CIITA-213ENST00000618327 IGLV4-3A0A075B6K6 122 aa10.12□□□□□ -0.79
CIITA-213ENST00000618327 TRAV23DV6A0A075B6W5 121 aa10.12□□□□□ -0.79
CIITA-213ENST00000618327 TEX49A0A1B0GTD5 131 aa10.12□□□□□ -0.79
CIITA-213ENST00000618327 IGHV4-30-4P0DP06 118 aa10.12□□□□□ -0.79
CIITA-213ENST00000618327 PDE6GP18545 87 aa10.11□□□□□ -0.79
CIITA-213ENST00000618327 MIAQ16674 131 aa10.11□□□□□ -0.79
CIITA-213ENST00000618327 DEFB131BA0A096LNP1 70 aa10.11□□□□□ -0.79
CIITA-213ENST00000618327 SVIPQ8NHG7 77 aa10.11□□□□□ -0.79
CIITA-213ENST00000618327 TRBV6-8A0A0A6YYG3 113 aa10.1□□□□□ -0.79
CIITA-213ENST00000618327 CHKB-CPT1BH3BT56 60 aa10.1□□□□□ -0.79
CIITA-213ENST00000618327 TSHBP01222 138 aa10.1□□□□□ -0.79
CIITA-213ENST00000618327 RPL18AQ02543 176 aaKnown RBP10.1□□□□□ -0.79
CIITA-213ENST00000618327 COL6A3P12111 3177 aa10.1□□□□□ -0.79
CIITA-213ENST00000618327 A0A0J9YXY3 114 aa10.1□□□□□ -0.79
CIITA-213ENST00000618327 H7C423 109 aa10.1□□□□□ -0.79
CIITA-213ENST00000618327 C1orf158Q8N1D5 194 aa10.09□□□□□ -0.79
CIITA-213ENST00000618327 DSPP15924 2871 aaKnown RBP10.09□□□□□ -0.79
CIITA-213ENST00000618327 DIRC1Q969H9 104 aa10.09□□□□□ -0.79
CIITA-213ENST00000618327 CXCL5P42830 114 aa10.09□□□□□ -0.79
CIITA-213ENST00000618327 NDUFA1O15239 70 aa10.09□□□□□ -0.79
CIITA-213ENST00000618327 LINC00310P59036 64 aa10.08□□□□□ -0.8
CIITA-213ENST00000618327 LINC00269Q8N2A0 174 aa10.08□□□□□ -0.8
CIITA-213ENST00000618327 A0A096LNT2 108 aa10.08□□□□□ -0.8
CIITA-213ENST00000618327 NCR3O14931 201 aa10.08□□□□□ -0.8
CIITA-213ENST00000618327 VCANP13611 3396 aa10.08□□□□□ -0.8
CIITA-213ENST00000618327 SPAG11BQ08648 103 aa10.07□□□□□ -0.8
CIITA-213ENST00000618327 KLK9Q2XQG4 91 aa10.07□□□□□ -0.8
CIITA-213ENST00000618327 KLK5Q9Y337 293 aaPredicted RBP10.07□□□□□ -0.8
CIITA-213ENST00000618327 NFE4Q86UQ8 179 aa10.07□□□□□ -0.8
CIITA-213ENST00000618327 PYGO1Q9Y3Y4 419 aa10.07□□□□□ -0.8
CIITA-213ENST00000618327 CDKN2A-AS1Q9UH64 79 aa10.07□□□□□ -0.8
CIITA-213ENST00000618327 LOC100131303A0A0U1RQF7 123 aa10.07□□□□□ -0.8
CIITA-213ENST00000618327 REG3AQ06141 175 aa10.06□□□□□ -0.8
CIITA-213ENST00000618327 HELZ2Q9BYK8 2649 aaKnown RBP10.06□□□□□ -0.8
CIITA-213ENST00000618327 SDIM1Q6ZPB5 146 aa10.06□□□□□ -0.8
CIITA-213ENST00000618327 ZNF22P17026 224 aaPredicted RBP10.06□□□□□ -0.8
CIITA-213ENST00000618327 URB1-AS1Q96HZ7 61 aa10.06□□□□□ -0.8
CIITA-213ENST00000618327 UPK3BQ9BT76 320 aa10.06□□□□□ -0.8
CIITA-213ENST00000618327 Q8N976 141 aa10.05□□□□□ -0.8
CIITA-213ENST00000618327 USP24Q9UPU5 2620 aa10.05□□□□□ -0.8
CIITA-213ENST00000618327 CFAP46Q8IYW2 2715 aa10.04□□□□□ -0.8
CIITA-213ENST00000618327 FHL3Q13643 280 aa10.04□□□□□ -0.8
CIITA-213ENST00000618327 MAPKAPK5-AS1Q8N8E1 139 aa10.04□□□□□ -0.8
CIITA-213ENST00000618327 FAM236DA0A1B0GTK5 79 aa10.04□□□□□ -0.8
CIITA-213ENST00000618327 FAM236CP0DP71 79 aa10.04□□□□□ -0.8
CIITA-213ENST00000618327 BPY2O14599 106 aa10.03□□□□□ -0.8
CIITA-213ENST00000618327 TIRAPP58753 221 aa10.03□□□□□ -0.8
CIITA-213ENST00000618327 DNAH14Q0VDD8 3507 aa10.03□□□□□ -0.8
CIITA-213ENST00000618327 AGRNO00468 2067 aa10.03□□□□□ -0.8
CIITA-213ENST00000618327 C3orf22Q8N5N4 141 aa10.03□□□□□ -0.8
CIITA-213ENST00000618327 UBE2D3P61077 147 aa10.03□□□□□ -0.8
CIITA-213ENST00000618327 UBE2D2P62837 147 aa10.03□□□□□ -0.8
CIITA-213ENST00000618327 IL17DQ8TAD2 202 aa10.03□□□□□ -0.8
CIITA-213ENST00000618327 TMEM223A0PJW6 202 aa10.02□□□□□ -0.8
CIITA-213ENST00000618327 SPTSSBQ8NFR3 76 aa10.02□□□□□ -0.8
CIITA-213ENST00000618327 CHCHD10Q8WYQ3 142 aaPredicted RBP10.02□□□□□ -0.81
CIITA-213ENST00000618327 FLNAP21333 2647 aaKnown RBP10.02□□□□□ -0.81
CIITA-213ENST00000618327 UBE2D4Q9Y2X8 147 aa10.01□□□□□ -0.81
CIITA-213ENST00000618327 MPLKIPQ8TAP9 179 aa10.01□□□□□ -0.81
CIITA-213ENST00000618327 CLUHP3Q96NS8 147 aa10.01□□□□□ -0.81
CIITA-213ENST00000618327 TRIAP1O43715 76 aa10.01□□□□□ -0.81
CIITA-213ENST00000618327 TRAV10A0A0B4J240 114 aa10.01□□□□□ -0.81
CIITA-213ENST00000618327 COX7BP24311 80 aa10□□□□□ -0.81
CIITA-213ENST00000618327 KPRPQ5T749 579 aaPredicted RBP10□□□□□ -0.81
CIITA-213ENST00000618327 BEAN1Q3B7T3 259 aa10□□□□□ -0.81
CIITA-213ENST00000618327 SPTBN5Q9NRC6 3674 aaKnown RBP10□□□□□ -0.81
CIITA-213ENST00000618327 TRBV30A0A0K0K1B3 111 aa10□□□□□ -0.81
CIITA-213ENST00000618327 ATP5EP2Q5VTU8 51 aa10□□□□□ -0.81
CIITA-213ENST00000618327 PKIGQ9Y2B9 76 aa9.99□□□□□ -0.81
CIITA-213ENST00000618327 ITPR3Q14573 2671 aa9.99□□□□□ -0.81
CIITA-213ENST00000618327 FAM240AA0A1B0GVK7 77 aa9.98□□□□□ -0.81
CIITA-213ENST00000618327 C2orf91Q6ZV80 131 aa9.98□□□□□ -0.81
CIITA-213ENST00000618327 FAM19A4Q96LR4 140 aa9.98□□□□□ -0.81
CIITA-213ENST00000618327 IGIPA6NJ69 53 aa9.98□□□□□ -0.81
CIITA-213ENST00000618327 MRPS36P82909 103 aaKnown RBP9.98□□□□□ -0.81
CIITA-213ENST00000618327 A0A0U1RQV1 116 aa9.98□□□□□ -0.81
CIITA-213ENST00000618327 MRPL55Q7Z7F7 128 aaKnown RBP9.98□□□□□ -0.81
CIITA-213ENST00000618327 LINC00308Q8TCZ7 52 aa9.98□□□□□ -0.81
CIITA-213ENST00000618327 A0A0J9YWU9 116 aa9.97□□□□□ -0.81
CIITA-213ENST00000618327 ENHOQ6UWT2 76 aa9.97□□□□□ -0.81
CIITA-213ENST00000618327 LELP1Q5T871 98 aa9.97□□□□□ -0.81
CIITA-213ENST00000618327 RETNQ9HD89 108 aa9.97□□□□□ -0.81
CIITA-213ENST00000618327 IMUPQ9GZP8 106 aa9.97□□□□□ -0.81
CIITA-213ENST00000618327 REV3LO60673 3130 aa9.96□□□□□ -0.82
CIITA-213ENST00000618327 H0Y9J4 135 aa9.96□□□□□ -0.82
CIITA-213ENST00000618327 UBE2AP49459 152 aa9.96□□□□□ -0.82
CIITA-213ENST00000618327 NANOS2P60321 138 aaKnown RBP9.95□□□□□ -0.82
CIITA-213ENST00000618327 NDUFC2-KCTD14E9PQ53 114 aa9.95□□□□□ -0.82
CIITA-213ENST00000618327 UFSP1Q6NVU6 142 aa9.95□□□□□ -0.82
CIITA-213ENST00000618327 SERP2Q8N6R1 65 aa9.95□□□□□ -0.82
CIITA-213ENST00000618327 EYSQ5T1H1 3165 aa9.95□□□□□ -0.82
CIITA-213ENST00000618327 XGP55808 180 aa9.95□□□□□ -0.82
CIITA-213ENST00000618327 FHL2Q14192 279 aa9.95□□□□□ -0.82
CIITA-213ENST00000618327 SLPIP03973 132 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms