RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 PRO0461Q9UI25 63 aa8.96□□□□□ -0.98
USHBP1-207ENST00000597928 MIR7-3HGQ8N6C7 128 aa8.95□□□□□ -0.98
USHBP1-207ENST00000597928 GYPEP15421 78 aa8.94□□□□□ -0.98
USHBP1-207ENST00000597928 HERVK_113P63121 156 aa8.94□□□□□ -0.98
USHBP1-207ENST00000597928 MGAM2Q2M2H8 2515 aa8.94□□□□□ -0.98
USHBP1-207ENST00000597928 TRAV4A0A0B4J268 109 aa8.94□□□□□ -0.98
USHBP1-207ENST00000597928 FHL3Q13643 280 aa8.94□□□□□ -0.98
USHBP1-207ENST00000597928 MIAQ16674 131 aa8.94□□□□□ -0.98
USHBP1-207ENST00000597928 DEFB135Q30KP9 77 aa8.94□□□□□ -0.98
USHBP1-207ENST00000597928 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.94□□□□□ -0.98
USHBP1-207ENST00000597928 SLPIP03973 132 aa8.93□□□□□ -0.98
USHBP1-207ENST00000597928 HIVEP1P15822 2718 aa8.93□□□□□ -0.98
USHBP1-207ENST00000597928 MALP21145 153 aa8.93□□□□□ -0.98
USHBP1-207ENST00000597928 UBE2D3P61077 147 aa8.92□□□□□ -0.98
USHBP1-207ENST00000597928 UBE2D2P62837 147 aa8.92□□□□□ -0.98
USHBP1-207ENST00000597928 F5H768 121 aa8.92□□□□□ -0.98
USHBP1-207ENST00000597928 LINC00242Q5T6M2 205 aa8.92□□□□□ -0.98
USHBP1-207ENST00000597928 LINC01006Q8NI28 216 aa8.92□□□□□ -0.98
USHBP1-207ENST00000597928 ODF3Q96PU9 254 aa8.92□□□□□ -0.98
USHBP1-207ENST00000597928 ANGP03950 147 aaKnown RBP8.91□□□□□ -0.98
USHBP1-207ENST00000597928 BAALC-AS2P0C853 105 aa8.91□□□□□ -0.98
USHBP1-207ENST00000597928 LINC00308Q8TCZ7 52 aa8.91□□□□□ -0.98
USHBP1-207ENST00000597928 MRPS36P82909 103 aaKnown RBP8.91□□□□□ -0.98
USHBP1-207ENST00000597928 SND1-IT1Q9HBX3 110 aa8.91□□□□□ -0.98
USHBP1-207ENST00000597928 CDIP1Q9H305 208 aa8.91□□□□□ -0.98
USHBP1-207ENST00000597928 IGLV4-60A0A075B6I1 120 aa8.9□□□□□ -0.98
USHBP1-207ENST00000597928 PRR3P79522 188 aaKnown RBP8.89□□□□□ -0.99
USHBP1-207ENST00000597928 Q8N2B8 174 aa8.89□□□□□ -0.99
USHBP1-207ENST00000597928 TRBV10-2A0A0K0K1G8 114 aa8.89□□□□□ -0.99
USHBP1-207ENST00000597928 AMELXQ99217 191 aa8.89□□□□□ -0.99
USHBP1-207ENST00000597928 NTM-AS1Q6ZSK4 140 aa8.89□□□□□ -0.99
USHBP1-207ENST00000597928 SPATA25Q9BR10 227 aa8.89□□□□□ -0.99
USHBP1-207ENST00000597928 A0A0B4J2C4 111 aa8.88□□□□□ -0.99
USHBP1-207ENST00000597928 H7C423 109 aa8.88□□□□□ -0.99
USHBP1-207ENST00000597928 RPL32P62910 135 aaKnown RBP8.88□□□□□ -0.99
USHBP1-207ENST00000597928 C11orf72Q8NBR9 251 aa8.88□□□□□ -0.99
USHBP1-207ENST00000597928 NBPF19A0A087WUL8 3843 aa8.87□□□□□ -0.99
USHBP1-207ENST00000597928 COX7B2Q8TF08 81 aa8.87□□□□□ -0.99
USHBP1-207ENST00000597928 IGKV3D-7A0A0C4DH55 119 aa8.86□□□□□ -0.99
USHBP1-207ENST00000597928 PYGO1Q9Y3Y4 419 aa8.86□□□□□ -0.99
USHBP1-207ENST00000597928 LECT2O14960 151 aa8.86□□□□□ -0.99
USHBP1-207ENST00000597928 HIST1H4AP62805 103 aaKnown RBP8.86□□□□□ -0.99
USHBP1-207ENST00000597928 DAZ2Q13117 558 aaKnown RBP8.86□□□□□ -0.99
USHBP1-207ENST00000597928 KLK9Q2XQG4 91 aa8.86□□□□□ -0.99
USHBP1-207ENST00000597928 DAZ4Q86SG3 579 aaKnown RBP8.86□□□□□ -0.99
USHBP1-207ENST00000597928 DNAJC30Q96LL9 226 aa8.86□□□□□ -0.99
USHBP1-207ENST00000597928 DAZ3Q9NR90 486 aaKnown RBP8.86□□□□□ -0.99
USHBP1-207ENST00000597928 STAB1Q9NY15 2570 aa8.85□□□□□ -0.99
USHBP1-207ENST00000597928 ATP6V0E2Q8NHE4 81 aa8.85□□□□□ -0.99
USHBP1-207ENST00000597928 SMIM1B2RUZ4 78 aa8.85□□□□□ -0.99
USHBP1-207ENST00000597928 Q8N3U1 123 aa8.85□□□□□ -0.99
USHBP1-207ENST00000597928 IFITM1P13164 125 aa8.84□□□□□ -0.99
USHBP1-207ENST00000597928 C9orf116Q5BN46 136 aaPredicted RBP8.84□□□□□ -0.99
USHBP1-207ENST00000597928 LINC00269Q8N2A0 174 aa8.84□□□□□ -0.99
USHBP1-207ENST00000597928 C14orf132Q9NPU4 83 aa8.84□□□□□ -0.99
USHBP1-207ENST00000597928 SS18Q15532 418 aa8.84□□□□□ -0.99
USHBP1-207ENST00000597928 S100A7L2Q5SY68 101 aa8.84□□□□□ -0.99
USHBP1-207ENST00000597928 FAM222AQ5U5X8 452 aa8.84□□□□□ -0.99
USHBP1-207ENST00000597928 CDC42SE2Q9NRR3 84 aa8.84□□□□□ -0.99
USHBP1-207ENST00000597928 DAD1P61803 113 aa8.83□□□□□ -1
USHBP1-207ENST00000597928 SOSTDC1Q6X4U4 206 aa8.83□□□□□ -1
USHBP1-207ENST00000597928 SCGB1A1P11684 91 aa8.83□□□□□ -1
USHBP1-207ENST00000597928 C16orf74Q96GX8 76 aa8.83□□□□□ -1
USHBP1-207ENST00000597928 NCR3O14931 201 aa8.83□□□□□ -1
USHBP1-207ENST00000597928 NDUFA1O15239 70 aa8.82□□□□□ -1
USHBP1-207ENST00000597928 BRI3O95415 125 aa8.82□□□□□ -1
USHBP1-207ENST00000597928 CITED1Q99966 193 aa8.82□□□□□ -1
USHBP1-207ENST00000597928 TRBV30A0A0K0K1B3 111 aa8.82□□□□□ -1
USHBP1-207ENST00000597928 TMEM86BQ8N661 226 aa8.82□□□□□ -1
USHBP1-207ENST00000597928 COPS9Q8WXC6 57 aa8.82□□□□□ -1
USHBP1-207ENST00000597928 FAM236AA0A1B0GUQ0 79 aa8.82□□□□□ -1
USHBP1-207ENST00000597928 FAM236BA0A1B0GV22 79 aa8.82□□□□□ -1
USHBP1-207ENST00000597928 INAFM1C9JVW0 142 aa8.82□□□□□ -1
USHBP1-207ENST00000597928 VWFP04275 2813 aa8.81□□□□□ -1
USHBP1-207ENST00000597928 A0A096LNT2 108 aa8.81□□□□□ -1
USHBP1-207ENST00000597928 CCDC179H3BU77 68 aa8.81□□□□□ -1
USHBP1-207ENST00000597928 FAM110AQ9BQ89 295 aa8.8□□□□□ -1
USHBP1-207ENST00000597928 TRBV6-8A0A0A6YYG3 113 aa8.8□□□□□ -1
USHBP1-207ENST00000597928 KLK12Q9UKR0 248 aa8.8□□□□□ -1
USHBP1-207ENST00000597928 LITAFQ99732 161 aa8.79□□□□□ -1
USHBP1-207ENST00000597928 EDA2RQ9HAV5 297 aa8.79□□□□□ -1
USHBP1-207ENST00000597928 LST1O00453 97 aa8.79□□□□□ -1
USHBP1-207ENST00000597928 COL6A5A8TX70 2615 aa8.79□□□□□ -1
USHBP1-207ENST00000597928 A8MTW9 85 aa8.79□□□□□ -1
USHBP1-207ENST00000597928 CR1P17927 2039 aa8.79□□□□□ -1
USHBP1-207ENST00000597928 TIRAPP58753 221 aa8.78□□□□□ -1
USHBP1-207ENST00000597928 RNF152Q8N8N0 203 aa8.78□□□□□ -1
USHBP1-207ENST00000597928 TRBV10-1A0A0K0K1A3 114 aa8.78□□□□□ -1
USHBP1-207ENST00000597928 J3QKU1 62 aa8.78□□□□□ -1
USHBP1-207ENST00000597928 SMIM20Q8N5G0 67 aa8.78□□□□□ -1
USHBP1-207ENST00000597928 LAMTOR3Q9UHA4 124 aa8.78□□□□□ -1
USHBP1-207ENST00000597928 PDZD2O15018 2839 aa8.78□□□□□ -1
USHBP1-207ENST00000597928 COX7A2LO14548 114 aa8.78□□□□□ -1
USHBP1-207ENST00000597928 NDUFV3P56181 108 aaKnown RBP8.78□□□□□ -1
USHBP1-207ENST00000597928 FAM104AQ969W3 186 aa8.78□□□□□ -1
USHBP1-207ENST00000597928 SPANXDQ9BXN6 97 aa8.78□□□□□ -1
USHBP1-207ENST00000597928 SPANXCQ9NY87 97 aa8.78□□□□□ -1
USHBP1-207ENST00000597928 SDIM1Q6ZPB5 146 aa8.77□□□□□ -1
USHBP1-207ENST00000597928 XAGE1AQ9HD64 81 aa8.77□□□□□ -1.01
USHBP1-207ENST00000597928 TRAV13-2A0A0B4J235 113 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms