RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 LOC107984640A0A0U1RRK4 108 aa7.17□□□□□ -1.26
LIG3-216ENST00000593099 PRM2P04554 102 aa7.17□□□□□ -1.26
LIG3-216ENST00000593099 SERP2Q8N6R1 65 aa7.17□□□□□ -1.26
LIG3-216ENST00000593099 C11orf21Q9P2W6 132 aa7.17□□□□□ -1.26
LIG3-216ENST00000593099 SERP1Q9Y6X1 66 aa7.17□□□□□ -1.26
LIG3-216ENST00000593099 DSCAML1Q8TD84 2053 aa7.17□□□□□ -1.26
LIG3-216ENST00000593099 RPL39P62891 51 aaKnown RBP7.17□□□□□ -1.26
LIG3-216ENST00000593099 C9orf85Q96MD7 179 aa7.17□□□□□ -1.26
LIG3-216ENST00000593099 A0A1B0GXF2 115 aa7.16□□□□□ -1.26
LIG3-216ENST00000593099 NUPR2A6NF83 97 aa7.16□□□□□ -1.26
LIG3-216ENST00000593099 NDUFC1O43677 76 aa7.16□□□□□ -1.26
LIG3-216ENST00000593099 CRYGDP07320 174 aa7.16□□□□□ -1.26
LIG3-216ENST00000593099 C1orf158Q8N1D5 194 aa7.16□□□□□ -1.26
LIG3-216ENST00000593099 PIK3CD-AS1Q5SR53 167 aa7.16□□□□□ -1.26
LIG3-216ENST00000593099 NDUFS5O43920 106 aa7.16□□□□□ -1.26
LIG3-216ENST00000593099 NEXN-AS1Q8NBZ9 246 aa7.16□□□□□ -1.26
LIG3-216ENST00000593099 IMUPQ9GZP8 106 aa7.16□□□□□ -1.26
LIG3-216ENST00000593099 A0A0J9YXV3 536 aa7.16□□□□□ -1.26
LIG3-216ENST00000593099 MGAM2Q2M2H8 2515 aa7.15□□□□□ -1.26
LIG3-216ENST00000593099 C14orf177Q52M58 125 aa7.15□□□□□ -1.26
LIG3-216ENST00000593099 M0QY20 66 aa7.15□□□□□ -1.27
LIG3-216ENST00000593099 CDK2AP2O75956 126 aa7.15□□□□□ -1.27
LIG3-216ENST00000593099 UNC79Q9P2D8 2635 aa7.15□□□□□ -1.27
LIG3-216ENST00000593099 H3BT86 120 aa7.15□□□□□ -1.27
LIG3-216ENST00000593099 J3QQQ9 107 aa7.15□□□□□ -1.27
LIG3-216ENST00000593099 DKK2Q9UBU2 259 aa7.14□□□□□ -1.27
LIG3-216ENST00000593099 TRBV6-8A0A0A6YYG3 113 aa7.14□□□□□ -1.27
LIG3-216ENST00000593099 TRAV23DV6A0A075B6W5 121 aa7.14□□□□□ -1.27
LIG3-216ENST00000593099 USP17L23D6RBM5 183 aa7.14□□□□□ -1.27
LIG3-216ENST00000593099 LY6G6CO95867 125 aa7.14□□□□□ -1.27
LIG3-216ENST00000593099 FXYD2P54710 66 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 TEP1Q99973 2627 aaKnown RBP7.13□□□□□ -1.27
LIG3-216ENST00000593099 NDUFA1O15239 70 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 XGP55808 180 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 MRPS36P82909 103 aaKnown RBP7.13□□□□□ -1.27
LIG3-216ENST00000593099 COL6A3P12111 3177 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 TRBV10-2A0A0K0K1G8 114 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 H7C423 109 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 REG3AQ06141 175 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 PCP2Q8IVA1 136 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 LINC00269Q8N2A0 174 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 TOMM6Q96B49 74 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 C14orf132Q9NPU4 83 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 SPAG11BQ08648 103 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 KLK9Q2XQG4 91 aa7.13□□□□□ -1.27
LIG3-216ENST00000593099 LELP1Q5T871 98 aa7.12□□□□□ -1.27
LIG3-216ENST00000593099 Q9H8V8 135 aa7.12□□□□□ -1.27
LIG3-216ENST00000593099 XIRP2A4UGR9 3374 aa7.12□□□□□ -1.27
LIG3-216ENST00000593099 IGLV2-18A0A075B6J9 118 aa7.12□□□□□ -1.27
LIG3-216ENST00000593099 RPL18AQ02543 176 aaKnown RBP7.12□□□□□ -1.27
LIG3-216ENST00000593099 Q6ZTC4 211 aa7.12□□□□□ -1.27
LIG3-216ENST00000593099 SPATA3Q8NHX4 192 aa7.12□□□□□ -1.27
LIG3-216ENST00000593099 SCRT2Q9NQ03 307 aa7.12□□□□□ -1.27
LIG3-216ENST00000593099 MAST4O15021 2626 aa7.11□□□□□ -1.27
LIG3-216ENST00000593099 NFE4Q86UQ8 179 aa7.11□□□□□ -1.27
LIG3-216ENST00000593099 YPEL4Q96NS1 127 aa7.11□□□□□ -1.27
LIG3-216ENST00000593099 IGHV4-4A0A075B6R2 117 aa7.11□□□□□ -1.27
LIG3-216ENST00000593099 TRBV6-5A0A0K0K1A5 114 aa7.11□□□□□ -1.27
LIG3-216ENST00000593099 Q6Q795 121 aa7.11□□□□□ -1.27
LIG3-216ENST00000593099 F8WEM9 126 aa7.1□□□□□ -1.27
LIG3-216ENST00000593099 LINC00526Q96FQ7 95 aa7.1□□□□□ -1.27
LIG3-216ENST00000593099 CD164Q04900 197 aa7.1□□□□□ -1.27
LIG3-216ENST00000593099 C4orf26Q17RF5 130 aa7.1□□□□□ -1.27
LIG3-216ENST00000593099 COX7B2Q8TF08 81 aa7.1□□□□□ -1.27
LIG3-216ENST00000593099 LINC00467Q9BRT7 94 aa7.1□□□□□ -1.27
LIG3-216ENST00000593099 CEMP1Q6PRD7 247 aaPredicted RBP7.1□□□□□ -1.27
LIG3-216ENST00000593099 LOC100131303A0A0U1RQF7 123 aa7.1□□□□□ -1.27
LIG3-216ENST00000593099 SOSTDC1Q6X4U4 206 aa7.09□□□□□ -1.27
LIG3-216ENST00000593099 HIGD1BQ9P298 99 aa7.09□□□□□ -1.27
LIG3-216ENST00000593099 SPATA12Q7Z6I5 190 aa7.09□□□□□ -1.27
LIG3-216ENST00000593099 OPRPNQ99935 248 aaPredicted RBP7.09□□□□□ -1.28
LIG3-216ENST00000593099 M0R2N4 97 aa7.08□□□□□ -1.28
LIG3-216ENST00000593099 COX8CQ7Z4L0 72 aa7.08□□□□□ -1.28
LIG3-216ENST00000593099 Q8N976 141 aa7.08□□□□□ -1.28
LIG3-216ENST00000593099 CHCHD10Q8WYQ3 142 aaPredicted RBP7.08□□□□□ -1.28
LIG3-216ENST00000593099 RNF185Q96GF1 192 aa7.08□□□□□ -1.28
LIG3-216ENST00000593099 K7ERS5 55 aa7.08□□□□□ -1.28
LIG3-216ENST00000593099 TRBV27A0A0K0K1C4 114 aa7.08□□□□□ -1.28
LIG3-216ENST00000593099 MIAQ16674 131 aa7.08□□□□□ -1.28
LIG3-216ENST00000593099 CNFNQ9BYD5 112 aa7.08□□□□□ -1.28
LIG3-216ENST00000593099 TIRAPP58753 221 aa7.07□□□□□ -1.28
LIG3-216ENST00000593099 ORMDL1Q9P0S3 153 aa7.07□□□□□ -1.28
LIG3-216ENST00000593099 UBE2D3P61077 147 aa7.07□□□□□ -1.28
LIG3-216ENST00000593099 UBE2D2P62837 147 aa7.07□□□□□ -1.28
LIG3-216ENST00000593099 SDIM1Q6ZPB5 146 aa7.07□□□□□ -1.28
LIG3-216ENST00000593099 LINC00173Q6ZV60 143 aa7.07□□□□□ -1.28
LIG3-216ENST00000593099 PRR15LQ9BU68 103 aa7.07□□□□□ -1.28
LIG3-216ENST00000593099 TRAV13-2A0A0B4J235 113 aa7.06□□□□□ -1.28
LIG3-216ENST00000593099 HIGD2BQ4VC39 106 aa7.06□□□□□ -1.28
LIG3-216ENST00000593099 NUPR1O60356 82 aa7.06□□□□□ -1.28
LIG3-216ENST00000593099 FHL2Q14192 279 aa7.05□□□□□ -1.28
LIG3-216ENST00000593099 IGHV1-58A0A0C4DH39 117 aa7.05□□□□□ -1.28
LIG3-216ENST00000593099 C11orf86A6NJI1 115 aa7.05□□□□□ -1.28
LIG3-216ENST00000593099 SBSPONQ8IVN8 264 aa7.05□□□□□ -1.28
LIG3-216ENST00000593099 UPK3BQ9BT76 320 aa7.05□□□□□ -1.28
LIG3-216ENST00000593099 RPS28P62857 69 aaKnown RBP7.04□□□□□ -1.28
LIG3-216ENST00000593099 CASC2Q6XLA1 102 aa7.04□□□□□ -1.28
LIG3-216ENST00000593099 CLEC2BQ92478 149 aa7.04□□□□□ -1.28
LIG3-216ENST00000593099 E9PLD3 99 aa7.04□□□□□ -1.28
LIG3-216ENST00000593099 POLR2KP53803 58 aaKnown RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms