RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 MYO15AQ9UKN7 3530 aa-1.39□□□□□ -2.63
SS18-214ENST00000580003 K7ERU9 68 aa-1.39□□□□□ -2.63
SS18-214ENST00000580003 MT1GP13640 62 aa-1.39□□□□□ -2.63
SS18-214ENST00000580003 KCNRGQ8N5I3 272 aa-1.39□□□□□ -2.63
SS18-214ENST00000580003 AGPAT4-IT1Q9H0P7 198 aa-1.39□□□□□ -2.63
SS18-214ENST00000580003 LENEPQ9Y5L5 61 aa-1.39□□□□□ -2.63
SS18-214ENST00000580003 ZFHX4Q86UP3 3567 aa-1.39□□□□□ -2.63
SS18-214ENST00000580003 DMXL2Q8TDJ6 3036 aa-1.39□□□□□ -2.63
SS18-214ENST00000580003 ZNF518AQ6AHZ1 1483 aa-1.39□□□□□ -2.63
SS18-214ENST00000580003 SPG11Q96JI7 2443 aa-1.39□□□□□ -2.63
SS18-214ENST00000580003 NWD2Q9ULI1 1742 aa-1.4□□□□□ -2.63
SS18-214ENST00000580003 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-1.4□□□□□ -2.63
SS18-214ENST00000580003 SPAARA0A1B0GVQ0 90 aa-1.4□□□□□ -2.63
SS18-214ENST00000580003 H0YAA0 97 aa-1.4□□□□□ -2.63
SS18-214ENST00000580003 TMEM170BQ5T4T1 132 aa-1.4□□□□□ -2.63
SS18-214ENST00000580003 MT1MQ8N339 61 aa-1.4□□□□□ -2.63
SS18-214ENST00000580003 PYDC1Q8WXC3 89 aa-1.4□□□□□ -2.63
SS18-214ENST00000580003 DNAH8Q96JB1 4490 aa-1.41□□□□□ -2.63
SS18-214ENST00000580003 MRC1P22897 1456 aa-1.41□□□□□ -2.63
SS18-214ENST00000580003 IQSEC2Q5JU85 1478 aa-1.41□□□□□ -2.63
SS18-214ENST00000580003 SPINK4O60575 86 aa-1.41□□□□□ -2.64
SS18-214ENST00000580003 CKS1BP61024 79 aa-1.41□□□□□ -2.64
SS18-214ENST00000580003 TRANK1O15050 2925 aa-1.41□□□□□ -2.64
SS18-214ENST00000580003 ACACBO00763 2458 aa-1.42□□□□□ -2.64
SS18-214ENST00000580003 ATMQ13315 3056 aa-1.42□□□□□ -2.64
SS18-214ENST00000580003 M0R2T5 61 aa-1.42□□□□□ -2.64
SS18-214ENST00000580003 MT2AP02795 61 aa-1.42□□□□□ -2.64
SS18-214ENST00000580003 KRTAP19-5Q3LI72 72 aa-1.42□□□□□ -2.64
SS18-214ENST00000580003 TCEAL4Q96EI5 215 aa-1.42□□□□□ -2.64
SS18-214ENST00000580003 V9GYH0 126 aa-1.42□□□□□ -2.64
SS18-214ENST00000580003 MYO7BQ6PIF6 2116 aa-1.42□□□□□ -2.64
SS18-214ENST00000580003 BICRAQ9NZM4 1560 aa-1.42□□□□□ -2.64
SS18-214ENST00000580003 BOD1L1Q8NFC6 3051 aa-1.43□□□□□ -2.64
SS18-214ENST00000580003 REV3LO60673 3130 aa-1.43□□□□□ -2.64
SS18-214ENST00000580003 TRAV13-2A0A0B4J235 113 aa-1.43□□□□□ -2.64
SS18-214ENST00000580003 HCG22E2RYF7 251 aa-1.43□□□□□ -2.64
SS18-214ENST00000580003 SPRR1BP22528 89 aa-1.43□□□□□ -2.64
SS18-214ENST00000580003 C10orf128Q5T292 105 aa-1.43□□□□□ -2.64
SS18-214ENST00000580003 Q6JHZ5 121 aa-1.43□□□□□ -2.64
SS18-214ENST00000580003 SDF2Q99470 211 aa-1.43□□□□□ -2.64
SS18-214ENST00000580003 PRDM2Q13029 1718 aa-1.43□□□□□ -2.64
SS18-214ENST00000580003 TNFP01375 233 aa-1.44□□□□□ -2.64
SS18-214ENST00000580003 MAFIPQ8WZ33 124 aa-1.44□□□□□ -2.64
SS18-214ENST00000580003 LZICQ8WZA0 190 aa-1.44□□□□□ -2.64
SS18-214ENST00000580003 BPTFQ12830 3046 aa-1.44□□□□□ -2.64
SS18-214ENST00000580003 PAPPAQ13219 1627 aa-1.44□□□□□ -2.64
SS18-214ENST00000580003 FHAD1B1AJZ9 1412 aa-1.45□□□□□ -2.64
SS18-214ENST00000580003 ACACAQ13085 2346 aa-1.46□□□□□ -2.64
SS18-214ENST00000580003 DYNC2H1Q8NCM8 4307 aaKnown RBP-1.46□□□□□ -2.64
SS18-214ENST00000580003 APOC3P02656 99 aa-1.46□□□□□ -2.64
SS18-214ENST00000580003 TPPP2P59282 170 aa-1.46□□□□□ -2.64
SS18-214ENST00000580003 TMEM191AQ9H0A3 160 aa-1.46□□□□□ -2.64
SS18-214ENST00000580003 MYH6P13533 1939 aa-1.46□□□□□ -2.64
SS18-214ENST00000580003 TRRAPQ9Y4A5 3859 aa-1.47□□□□□ -2.64
SS18-214ENST00000580003 LRBAP50851 2863 aa-1.47□□□□□ -2.64
SS18-214ENST00000580003 MT1EP04732 61 aa-1.47□□□□□ -2.64
SS18-214ENST00000580003 AMELXQ99217 191 aa-1.47□□□□□ -2.64
SS18-214ENST00000580003 PRUNE2Q8WUY3 3088 aa-1.48□□□□□ -2.65
SS18-214ENST00000580003 UQCR11O14957 56 aa-1.48□□□□□ -2.65
SS18-214ENST00000580003 COPZ1P61923 177 aa-1.48□□□□□ -2.65
SS18-214ENST00000580003 DEFB112Q30KQ8 113 aa-1.48□□□□□ -2.65
SS18-214ENST00000580003 TTC9CQ8N5M4 171 aa-1.48□□□□□ -2.65
SS18-214ENST00000580003 COPS9Q8WXC6 57 aa-1.48□□□□□ -2.65
SS18-214ENST00000580003 MT1LQ93083 61 aa-1.48□□□□□ -2.65
SS18-214ENST00000580003 CCDC167Q9P0B6 97 aa-1.48□□□□□ -2.65
SS18-214ENST00000580003 MYH8P13535 1937 aa-1.48□□□□□ -2.65
SS18-214ENST00000580003 MYO9AB2RTY4 2548 aa-1.48□□□□□ -2.65
SS18-214ENST00000580003 ZFHX3Q15911 3703 aa-1.49□□□□□ -2.65
SS18-214ENST00000580003 B2MP61769 119 aa-1.49□□□□□ -2.65
SS18-214ENST00000580003 SMCO1Q147U7 214 aa-1.49□□□□□ -2.65
SS18-214ENST00000580003 C12orf73Q69YU5 71 aa-1.49□□□□□ -2.65
SS18-214ENST00000580003 BAGE2Q86Y30 109 aa-1.49□□□□□ -2.65
SS18-214ENST00000580003 DEFB123Q8N688 67 aa-1.49□□□□□ -2.65
SS18-214ENST00000580003 COPZ2Q9P299 210 aa-1.49□□□□□ -2.65
SS18-214ENST00000580003 COL4A6Q14031 1691 aa-1.49□□□□□ -2.65
SS18-214ENST00000580003 TSC2P49815 1807 aa-1.5□□□□□ -2.65
SS18-214ENST00000580003 DEFB1P60022 68 aa-1.5□□□□□ -2.65
SS18-214ENST00000580003 TPT1P8Q9HAU6 139 aa-1.5□□□□□ -2.65
SS18-214ENST00000580003 PPIP5K1Q6PFW1 1433 aa-1.5□□□□□ -2.65
SS18-214ENST00000580003 CSMD2Q7Z408 3487 aa-1.51□□□□□ -2.65
SS18-214ENST00000580003 SMR3BP02814 79 aaPredicted RBP-1.51□□□□□ -2.65
SS18-214ENST00000580003 TSTD1Q8NFU3 115 aa-1.51□□□□□ -2.65
SS18-214ENST00000580003 RANBP2P49792 3224 aaKnown RBP-1.51□□□□□ -2.65
SS18-214ENST00000580003 SHANK2Q9UPX8 1470 aa-1.51□□□□□ -2.65
SS18-214ENST00000580003 TLN1Q9Y490 2541 aaKnown RBP-1.51□□□□□ -2.65
SS18-214ENST00000580003 F8VRH5 84 aa-1.52□□□□□ -2.65
SS18-214ENST00000580003 FXYD6Q9H0Q3 95 aa-1.52□□□□□ -2.65
SS18-214ENST00000580003 LINC00472Q9H8W2 130 aa-1.52□□□□□ -2.65
SS18-214ENST00000580003 SPTBN5Q9NRC6 3674 aaKnown RBP-1.53□□□□□ -2.65
SS18-214ENST00000580003 RPS25P62851 125 aaKnown RBP-1.53□□□□□ -2.65
SS18-214ENST00000580003 Q6AWC8 147 aa-1.53□□□□□ -2.65
SS18-214ENST00000580003 FREM2Q5SZK8 3169 aa-1.53□□□□□ -2.66
SS18-214ENST00000580003 TROQ12816 1431 aaPredicted RBP-1.54□□□□□ -2.66
SS18-214ENST00000580003 ANKRD30AQ9BXX3 1397 aa-1.54□□□□□ -2.66
SS18-214ENST00000580003 DEFB135Q30KP9 77 aa-1.54□□□□□ -2.66
SS18-214ENST00000580003 SBF2Q86WG5 1849 aa-1.54□□□□□ -2.66
SS18-214ENST00000580003 GAPVD1Q14C86 1478 aa-1.55□□□□□ -2.66
SS18-214ENST00000580003 AKAP14Q86UN6 197 aa-1.55□□□□□ -2.66
SS18-214ENST00000580003 KNL1Q8NG31 2342 aa-1.55□□□□□ -2.66
SS18-214ENST00000580003 GOLGA4Q13439 2230 aaKnown RBP-1.56□□□□□ -2.66
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms