RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 SPINK8P0C7L1 97 aa12.99□□□□□ -0.33
CLN3-233ENST00000568452 IGHV3-30-3P0DP02 117 aa12.99□□□□□ -0.33
CLN3-233ENST00000568452 M0R143 59 aa12.98□□□□□ -0.33
CLN3-233ENST00000568452 REG3AQ06141 175 aa12.98□□□□□ -0.33
CLN3-233ENST00000568452 TSPEAR-AS2P59090 65 aa12.97□□□□□ -0.33
CLN3-233ENST00000568452 WFDC10BQ8IUB3 73 aa12.97□□□□□ -0.33
CLN3-233ENST00000568452 Q8N3U1 123 aa12.97□□□□□ -0.33
CLN3-233ENST00000568452 FBN3Q75N90 2809 aa12.97□□□□□ -0.33
CLN3-233ENST00000568452 TRAV8-3A0A0A6YYJ7 113 aa12.96□□□□□ -0.33
CLN3-233ENST00000568452 CLPSL2Q6UWE3 100 aa12.96□□□□□ -0.33
CLN3-233ENST00000568452 IGHV3OR16-9A0A0B4J2B5 98 aa12.95□□□□□ -0.34
CLN3-233ENST00000568452 IGLV5-39A0A0G2JS06 123 aa12.95□□□□□ -0.34
CLN3-233ENST00000568452 SMIM1B2RUZ4 78 aa12.95□□□□□ -0.34
CLN3-233ENST00000568452 IGHV3-30P01768 117 aa12.95□□□□□ -0.34
CLN3-233ENST00000568452 IGHV3-33P01772 117 aa12.95□□□□□ -0.34
CLN3-233ENST00000568452 IGHV3-30-5P0DP03 117 aa12.95□□□□□ -0.34
CLN3-233ENST00000568452 CCL18P55774 89 aa12.95□□□□□ -0.34
CLN3-233ENST00000568452 SCGB1D4Q6XE38 83 aa12.94□□□□□ -0.34
CLN3-233ENST00000568452 PRR34Q9NV39 138 aa12.94□□□□□ -0.34
CLN3-233ENST00000568452 KLK12Q9UKR0 248 aa12.94□□□□□ -0.34
CLN3-233ENST00000568452 PRKDCP78527 4128 aaKnown RBP12.93□□□□□ -0.34
CLN3-233ENST00000568452 A0A087WZ39 114 aa12.93□□□□□ -0.34
CLN3-233ENST00000568452 SNHG12Q9BXW3 62 aa12.93□□□□□ -0.34
CLN3-233ENST00000568452 CRPP02741 224 aa12.92□□□□□ -0.34
CLN3-233ENST00000568452 XCL1P47992 114 aa12.92□□□□□ -0.34
CLN3-233ENST00000568452 HSD52Q0P140 79 aa12.92□□□□□ -0.34
CLN3-233ENST00000568452 LINC01556Q5JQF7 62 aa12.92□□□□□ -0.34
CLN3-233ENST00000568452 LINC01561Q8N1V8 128 aa12.92□□□□□ -0.34
CLN3-233ENST00000568452 HINT1P49773 126 aaPredicted RBP12.91□□□□□ -0.34
CLN3-233ENST00000568452 ZFAND6Q6FIF0 208 aa12.91□□□□□ -0.34
CLN3-233ENST00000568452 CD164L2Q6UWJ8 174 aa12.91□□□□□ -0.34
CLN3-233ENST00000568452 CHCHD10Q8WYQ3 142 aaPredicted RBP12.91□□□□□ -0.34
CLN3-233ENST00000568452 NDUFA12Q9UI09 145 aa12.91□□□□□ -0.34
CLN3-233ENST00000568452 TRAV8-4A0A0B4J246 113 aa12.9□□□□□ -0.34
CLN3-233ENST00000568452 NUPR2A6NF83 97 aa12.9□□□□□ -0.34
CLN3-233ENST00000568452 EREGO14944 169 aa12.9□□□□□ -0.34
CLN3-233ENST00000568452 LINC00588Q9Y4M8 146 aa12.9□□□□□ -0.34
CLN3-233ENST00000568452 DNAH10OSP0CZ25 163 aa12.89□□□□□ -0.35
CLN3-233ENST00000568452 BATFQ16520 125 aa12.89□□□□□ -0.35
CLN3-233ENST00000568452 TAL2Q16559 108 aa12.89□□□□□ -0.35
CLN3-233ENST00000568452 C5orf38Q86SI9 138 aa12.89□□□□□ -0.35
CLN3-233ENST00000568452 ENHOQ6UWT2 76 aa12.88□□□□□ -0.35
CLN3-233ENST00000568452 UBE2WQ96B02 151 aa12.88□□□□□ -0.35
CLN3-233ENST00000568452 KLK5Q9Y337 293 aaPredicted RBP12.88□□□□□ -0.35
CLN3-233ENST00000568452 NDUFA1O15239 70 aa12.88□□□□□ -0.35
CLN3-233ENST00000568452 MIAQ16674 131 aa12.88□□□□□ -0.35
CLN3-233ENST00000568452 BVES-AS1Q5T3Y7 98 aa12.88□□□□□ -0.35
CLN3-233ENST00000568452 UPK3BQ9BT76 320 aa12.88□□□□□ -0.35
CLN3-233ENST00000568452 IGLV10-54A0A075B6I4 117 aa12.87□□□□□ -0.35
CLN3-233ENST00000568452 COX7A2LO14548 114 aa12.87□□□□□ -0.35
CLN3-233ENST00000568452 COX7B2Q8TF08 81 aa12.86□□□□□ -0.35
CLN3-233ENST00000568452 HIST1H4GQ99525 98 aa12.86□□□□□ -0.35
CLN3-233ENST00000568452 APLNQ9ULZ1 77 aa12.86□□□□□ -0.35
CLN3-233ENST00000568452 C10orf126Q8N4M7 172 aa12.85□□□□□ -0.35
CLN3-233ENST00000568452 SPANXB1Q9NS25 103 aaPredicted RBP12.85□□□□□ -0.35
CLN3-233ENST00000568452 A0A0J9YXY3 114 aa12.84□□□□□ -0.35
CLN3-233ENST00000568452 GAGE12HA6NDE8 117 aa12.84□□□□□ -0.35
CLN3-233ENST00000568452 HERV-K104P63124 156 aa12.84□□□□□ -0.35
CLN3-233ENST00000568452 FOXI1Q12951 378 aa12.84□□□□□ -0.35
CLN3-233ENST00000568452 ORAOV1Q8WV07 137 aa12.84□□□□□ -0.35
CLN3-233ENST00000568452 TMEM238C9JI98 176 aa12.83□□□□□ -0.36
CLN3-233ENST00000568452 MALP21145 153 aa12.83□□□□□ -0.36
CLN3-233ENST00000568452 SRSF9Q13242 221 aaKnown RBP eCLIP12.83□□□□□ -0.36
CLN3-233ENST00000568452 CEND1Q8N111 149 aa12.83□□□□□ -0.36
CLN3-233ENST00000568452 Q9H8V8 135 aa12.83□□□□□ -0.36
CLN3-233ENST00000568452 TOMM7Q9P0U1 55 aa12.83□□□□□ -0.36
CLN3-233ENST00000568452 GCSHP23434 173 aa12.82□□□□□ -0.36
CLN3-233ENST00000568452 COL5A1-AS1Q5SY13 56 aa12.82□□□□□ -0.36
CLN3-233ENST00000568452 SFTA2Q6UW10 78 aa12.82□□□□□ -0.36
CLN3-233ENST00000568452 ZNF625Q96I27 306 aaPredicted RBP12.81□□□□□ -0.36
CLN3-233ENST00000568452 TM2D2Q9BX73 214 aa12.81□□□□□ -0.36
CLN3-233ENST00000568452 TIMM17BO60830 172 aa12.8□□□□□ -0.36
CLN3-233ENST00000568452 APOMO95445 188 aa12.8□□□□□ -0.36
CLN3-233ENST00000568452 PRSS2P07478 247 aa12.8□□□□□ -0.36
CLN3-233ENST00000568452 Q8IZM0 81 aa12.8□□□□□ -0.36
CLN3-233ENST00000568452 COL7A1Q02388 2944 aa12.8□□□□□ -0.36
CLN3-233ENST00000568452 CIRBPQ14011 172 aaKnown RBP12.8□□□□□ -0.36
CLN3-233ENST00000568452 STAB2Q8WWQ8 2551 aa12.79□□□□□ -0.36
CLN3-233ENST00000568452 K7EP13 123 aa12.79□□□□□ -0.36
CLN3-233ENST00000568452 C6orf226Q5I0X4 101 aa12.79□□□□□ -0.36
CLN3-233ENST00000568452 UBE2DNLQ8IWF7 75 aa12.79□□□□□ -0.36
CLN3-233ENST00000568452 C1orf43Q9BWL3 253 aa12.79□□□□□ -0.36
CLN3-233ENST00000568452 A6NDN8 102 aa12.78□□□□□ -0.36
CLN3-233ENST00000568452 IBA57-AS1B1ANH7 110 aa12.78□□□□□ -0.36
CLN3-233ENST00000568452 PTTG1IPP53801 180 aa12.78□□□□□ -0.36
CLN3-233ENST00000568452 Q6ZVH6 145 aa12.77□□□□□ -0.36
CLN3-233ENST00000568452 CXCL5P42830 114 aa12.76□□□□□ -0.37
CLN3-233ENST00000568452 FXYD2P54710 66 aa12.76□□□□□ -0.37
CLN3-233ENST00000568452 CFAP161Q6P656 301 aa12.76□□□□□ -0.37
CLN3-233ENST00000568452 LITAFQ99732 161 aa12.76□□□□□ -0.37
CLN3-233ENST00000568452 SPANXDQ9BXN6 97 aa12.76□□□□□ -0.37
CLN3-233ENST00000568452 SPANXCQ9NY87 97 aa12.76□□□□□ -0.37
CLN3-233ENST00000568452 TMEM238LA0A1B0GVL6 79 aa12.75□□□□□ -0.37
CLN3-233ENST00000568452 A6NJY4 79 aa12.75□□□□□ -0.37
CLN3-233ENST00000568452 MEIG1Q5JSS6 88 aa12.75□□□□□ -0.37
CLN3-233ENST00000568452 KRTAP26-1Q6PEX3 210 aa12.75□□□□□ -0.37
CLN3-233ENST00000568452 DYNC2H1Q8NCM8 4307 aaKnown RBP12.75□□□□□ -0.37
CLN3-233ENST00000568452 RMI2Q96E14 147 aa12.74□□□□□ -0.37
CLN3-233ENST00000568452 WWC2-AS2Q96NR7 200 aa12.74□□□□□ -0.37
CLN3-233ENST00000568452 IGKV2D-24A0A075B6R9 120 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms