RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 INAFM1C9JVW0 142 aa4.37□□□□□ -1.71
CLN3-223ENST00000566472 COX7A2LO14548 114 aa4.37□□□□□ -1.71
CLN3-223ENST00000566472 DEFB130BP0DP73 79 aa4.37□□□□□ -1.71
CLN3-223ENST00000566472 DEFB130AP0DP74 79 aa4.37□□□□□ -1.71
CLN3-223ENST00000566472 GYPEP15421 78 aa4.37□□□□□ -1.71
CLN3-223ENST00000566472 SHISA2Q6UWI4 295 aa4.37□□□□□ -1.71
CLN3-223ENST00000566472 CSMD1Q96PZ7 3565 aa4.37□□□□□ -1.71
CLN3-223ENST00000566472 POLQO75417 2590 aa4.37□□□□□ -1.71
CLN3-223ENST00000566472 COL12A1Q99715 3063 aa4.36□□□□□ -1.71
CLN3-223ENST00000566472 LINC00959A0A1B0GUT2 108 aa4.36□□□□□ -1.71
CLN3-223ENST00000566472 MIFP14174 115 aa4.36□□□□□ -1.71
CLN3-223ENST00000566472 NPC2P61916 151 aa4.36□□□□□ -1.71
CLN3-223ENST00000566472 SS18Q15532 418 aa4.36□□□□□ -1.71
CLN3-223ENST00000566472 SOSTDC1Q6X4U4 206 aa4.36□□□□□ -1.71
CLN3-223ENST00000566472 WFDC9Q8NEX5 89 aa4.36□□□□□ -1.71
CLN3-223ENST00000566472 UBE2WQ96B02 151 aa4.36□□□□□ -1.71
CLN3-223ENST00000566472 CDIP1Q9H305 208 aa4.36□□□□□ -1.71
CLN3-223ENST00000566472 ZFYVE26Q68DK2 2539 aa4.36□□□□□ -1.71
CLN3-223ENST00000566472 PAX4O43316 350 aa4.35□□□□□ -1.71
CLN3-223ENST00000566472 TRACP01848 142 aa4.35□□□□□ -1.71
CLN3-223ENST00000566472 CRPP02741 224 aa4.35□□□□□ -1.71
CLN3-223ENST00000566472 CXCL5P42830 114 aa4.35□□□□□ -1.71
CLN3-223ENST00000566472 RPL28P46779 137 aaKnown RBP4.35□□□□□ -1.71
CLN3-223ENST00000566472 C2orf82Q6UX34 121 aa4.35□□□□□ -1.71
CLN3-223ENST00000566472 Q8IZM0 81 aa4.35□□□□□ -1.71
CLN3-223ENST00000566472 DAND5Q8N907 189 aa4.35□□□□□ -1.71
CLN3-223ENST00000566472 NTN5Q8WTR8 489 aaPredicted RBP4.35□□□□□ -1.71
CLN3-223ENST00000566472 IGHV4-28A0A0C4DH34 117 aa4.34□□□□□ -1.71
CLN3-223ENST00000566472 ATP5G1P05496 136 aa4.34□□□□□ -1.71
CLN3-223ENST00000566472 DAD1P61803 113 aa4.34□□□□□ -1.71
CLN3-223ENST00000566472 MRPL23Q16540 153 aaKnown RBP4.34□□□□□ -1.71
CLN3-223ENST00000566472 DEFB121Q5J5C9 76 aa4.34□□□□□ -1.71
CLN3-223ENST00000566472 MIR7-3HGQ8N6C7 128 aa4.34□□□□□ -1.71
CLN3-223ENST00000566472 Q8NAQ8 132 aa4.34□□□□□ -1.71
CLN3-223ENST00000566472 TOMM7Q9P0U1 55 aa4.34□□□□□ -1.71
CLN3-223ENST00000566472 ITPR3Q14573 2671 aa4.34□□□□□ -1.72
CLN3-223ENST00000566472 SORL1Q92673 2214 aa4.33□□□□□ -1.72
CLN3-223ENST00000566472 TRAV8-4A0A0B4J246 113 aa4.33□□□□□ -1.72
CLN3-223ENST00000566472 FAM240AA0A1B0GVK7 77 aa4.33□□□□□ -1.72
CLN3-223ENST00000566472 SPART-AS1P0CW21 52 aa4.33□□□□□ -1.72
CLN3-223ENST00000566472 LINC00158P58513 81 aa4.33□□□□□ -1.72
CLN3-223ENST00000566472 DEFB135Q30KP9 77 aa4.33□□□□□ -1.72
CLN3-223ENST00000566472 CD164L2Q6UWJ8 174 aa4.33□□□□□ -1.72
CLN3-223ENST00000566472 MUC7Q8TAX7 377 aa4.33□□□□□ -1.72
CLN3-223ENST00000566472 CLEC2BQ92478 149 aa4.33□□□□□ -1.72
CLN3-223ENST00000566472 SND1-IT1Q9HBX3 110 aa4.33□□□□□ -1.72
CLN3-223ENST00000566472 ABCA12Q86UK0 2595 aa4.32□□□□□ -1.72
CLN3-223ENST00000566472 SVEP1Q4LDE5 3571 aa4.32□□□□□ -1.72
CLN3-223ENST00000566472 IGKV3OR2-268A0A0C4DH90 116 aa4.32□□□□□ -1.72
CLN3-223ENST00000566472 A0A0U1RRA0 63 aa4.32□□□□□ -1.72
CLN3-223ENST00000566472 H0YGX0 51 aa4.32□□□□□ -1.72
CLN3-223ENST00000566472 LELP1Q5T871 98 aa4.32□□□□□ -1.72
CLN3-223ENST00000566472 C5orf38Q86SI9 138 aa4.32□□□□□ -1.72
CLN3-223ENST00000566472 UTP20O75691 2785 aaKnown RBP4.32□□□□□ -1.72
CLN3-223ENST00000566472 CELSR1Q9NYQ6 3014 aa4.32□□□□□ -1.72
CLN3-223ENST00000566472 ASH1LQ9NR48 2969 aaKnown RBP4.31□□□□□ -1.72
CLN3-223ENST00000566472 IGKV2-28A0A075B6P5 120 aa4.31□□□□□ -1.72
CLN3-223ENST00000566472 IGKV2D-28P01615 120 aa4.31□□□□□ -1.72
CLN3-223ENST00000566472 ACYP1P07311 99 aa4.31□□□□□ -1.72
CLN3-223ENST00000566472 CCL18P55774 89 aa4.31□□□□□ -1.72
CLN3-223ENST00000566472 XGP55808 180 aa4.31□□□□□ -1.72
CLN3-223ENST00000566472 COX17Q14061 63 aa4.31□□□□□ -1.72
CLN3-223ENST00000566472 C6orf226Q5I0X4 101 aa4.31□□□□□ -1.72
CLN3-223ENST00000566472 SPATA3Q8NHX4 192 aa4.31□□□□□ -1.72
CLN3-223ENST00000566472 APCP25054 2843 aa4.31□□□□□ -1.72
CLN3-223ENST00000566472 ANK3Q12955 4377 aaKnown RBP4.3□□□□□ -1.72
CLN3-223ENST00000566472 VPS13CQ709C8 3753 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 H3BNG1 76 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 NDUFC2O95298 119 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 MT-ATP8P03928 68 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 IGHV4-30-4P0DP06 118 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 XCL1P47992 114 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 REG3AQ06141 175 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 CFAP161Q6P656 301 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 Q6Q795 121 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 LINC00337Q8N6G1 96 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 CHCHD10Q8WYQ3 142 aaPredicted RBP4.3□□□□□ -1.72
CLN3-223ENST00000566472 ZFHX3Q15911 3703 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 PDZD2O15018 2839 aa4.3□□□□□ -1.72
CLN3-223ENST00000566472 EPG5Q9HCE0 2579 aa4.29□□□□□ -1.72
CLN3-223ENST00000566472 TEX49A0A1B0GTD5 131 aa4.29□□□□□ -1.72
CLN3-223ENST00000566472 A0A1B0GV72 72 aa4.29□□□□□ -1.72
CLN3-223ENST00000566472 A0A1B0GX51 115 aa4.29□□□□□ -1.72
CLN3-223ENST00000566472 CKS1BP61024 79 aa4.29□□□□□ -1.72
CLN3-223ENST00000566472 KIAA0087Q14695 138 aa4.29□□□□□ -1.72
CLN3-223ENST00000566472 LINC00269Q8N2A0 174 aa4.29□□□□□ -1.72
CLN3-223ENST00000566472 CELA1Q9UNI1 258 aa4.29□□□□□ -1.72
CLN3-223ENST00000566472 KLK5Q9Y337 293 aaPredicted RBP4.29□□□□□ -1.72
CLN3-223ENST00000566472 KMT2BQ9UMN6 2715 aaPredicted RBP4.29□□□□□ -1.72
CLN3-223ENST00000566472 FLNAP21333 2647 aaKnown RBP4.28□□□□□ -1.72
CLN3-223ENST00000566472 MYO9AB2RTY4 2548 aa4.28□□□□□ -1.72
CLN3-223ENST00000566472 A0A096LPF7 62 aa4.28□□□□□ -1.72
CLN3-223ENST00000566472 SNCGO76070 127 aa4.28□□□□□ -1.72
CLN3-223ENST00000566472 ANGP03950 147 aaKnown RBP4.28□□□□□ -1.72
CLN3-223ENST00000566472 BAALC-AS2P0C853 105 aa4.28□□□□□ -1.72
CLN3-223ENST00000566472 INAFM2P0DMQ5 153 aa4.28□□□□□ -1.72
CLN3-223ENST00000566472 MALP21145 153 aa4.28□□□□□ -1.72
CLN3-223ENST00000566472 PFN2P35080 140 aa4.28□□□□□ -1.72
CLN3-223ENST00000566472 SMIM11BQ8TCY0 68 aa4.28□□□□□ -1.72
CLN3-223ENST00000566472 C11orf68Q9H3H3 251 aaKnown RBP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms