RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 A0A087WZ39 114 aa3.52□□□□□ -1.85
SYNE2-223ENST00000557005 TRBV10-3A0A0K0K1G6 114 aa3.52□□□□□ -1.85
SYNE2-223ENST00000557005 H0Y9J4 135 aa3.52□□□□□ -1.85
SYNE2-223ENST00000557005 NTM-AS1Q6ZSK4 140 aa3.52□□□□□ -1.85
SYNE2-223ENST00000557005 C5orf42Q9H799 3197 aa3.52□□□□□ -1.85
SYNE2-223ENST00000557005 TRBV7-6A0A0J9YX20 115 aa3.51□□□□□ -1.85
SYNE2-223ENST00000557005 LYRM9A8MSI8 78 aa3.51□□□□□ -1.85
SYNE2-223ENST00000557005 CRYGAP11844 174 aa3.51□□□□□ -1.85
SYNE2-223ENST00000557005 UNQ6190/PRO20217Q6UXQ8 127 aa3.51□□□□□ -1.85
SYNE2-223ENST00000557005 PRYO14603 147 aa3.51□□□□□ -1.85
SYNE2-223ENST00000557005 NANOS2P60321 138 aaKnown RBP3.51□□□□□ -1.85
SYNE2-223ENST00000557005 ZNF575Q86XF7 245 aa3.51□□□□□ -1.85
SYNE2-223ENST00000557005 CYSRT1A8MQ03 144 aa3.51□□□□□ -1.85
SYNE2-223ENST00000557005 Q8N9L7 120 aa3.51□□□□□ -1.85
SYNE2-223ENST00000557005 SEC16AO15027 2179 aa3.51□□□□□ -1.85
SYNE2-223ENST00000557005 CNTRLQ7Z7A1 2325 aa3.5□□□□□ -1.85
SYNE2-223ENST00000557005 M0R378 163 aa3.5□□□□□ -1.85
SYNE2-223ENST00000557005 TRAV10A0A0B4J240 114 aa3.5□□□□□ -1.85
SYNE2-223ENST00000557005 NDUFC1O43677 76 aa3.5□□□□□ -1.85
SYNE2-223ENST00000557005 LINC00575Q6W349 94 aa3.5□□□□□ -1.85
SYNE2-223ENST00000557005 WFDC13Q8IUB5 93 aa3.5□□□□□ -1.85
SYNE2-223ENST00000557005 Q6ZVQ6 151 aa3.5□□□□□ -1.85
SYNE2-223ENST00000557005 CHKB-CPT1BH3BT56 60 aa3.5□□□□□ -1.85
SYNE2-223ENST00000557005 BRI3O95415 125 aa3.5□□□□□ -1.85
SYNE2-223ENST00000557005 Q8N3U1 123 aa3.5□□□□□ -1.85
SYNE2-223ENST00000557005 IGLV5-45A0A087WSX0 123 aa3.49□□□□□ -1.85
SYNE2-223ENST00000557005 ZGRF1Q86YA3 2104 aa3.49□□□□□ -1.85
SYNE2-223ENST00000557005 SMIM26A0A096LP01 95 aa3.49□□□□□ -1.85
SYNE2-223ENST00000557005 TECTAO75443 2155 aa3.49□□□□□ -1.85
SYNE2-223ENST00000557005 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.49□□□□□ -1.85
SYNE2-223ENST00000557005 MED13Q9UHV7 2174 aa3.48□□□□□ -1.85
SYNE2-223ENST00000557005 IGKV2-24A0A0C4DH68 120 aa3.48□□□□□ -1.85
SYNE2-223ENST00000557005 PSPHP1O15172 72 aa3.48□□□□□ -1.85
SYNE2-223ENST00000557005 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.48□□□□□ -1.85
SYNE2-223ENST00000557005 FAM19A3Q7Z5A8 133 aa3.48□□□□□ -1.85
SYNE2-223ENST00000557005 HIGD2AQ9BW72 106 aa3.48□□□□□ -1.85
SYNE2-223ENST00000557005 RTTNQ86VV8 2226 aa3.48□□□□□ -1.85
SYNE2-223ENST00000557005 DEFB116Q30KQ4 102 aa3.48□□□□□ -1.85
SYNE2-223ENST00000557005 KNL1Q8NG31 2342 aa3.47□□□□□ -1.85
SYNE2-223ENST00000557005 A0A096LNI7 61 aa3.47□□□□□ -1.85
SYNE2-223ENST00000557005 SMIM29Q86T20 159 aa3.47□□□□□ -1.85
SYNE2-223ENST00000557005 RETNQ9HD89 108 aa3.47□□□□□ -1.85
SYNE2-223ENST00000557005 C9orf129Q5T035 196 aaKnown RBP3.47□□□□□ -1.85
SYNE2-223ENST00000557005 LELP1Q5T871 98 aa3.47□□□□□ -1.85
SYNE2-223ENST00000557005 KRTAP10-9P60411 292 aa3.47□□□□□ -1.85
SYNE2-223ENST00000557005 Q6ZQT0 140 aa3.47□□□□□ -1.85
SYNE2-223ENST00000557005 PRR15LQ9BU68 103 aa3.47□□□□□ -1.85
SYNE2-223ENST00000557005 SPATA3Q8NHX4 192 aa3.47□□□□□ -1.85
SYNE2-223ENST00000557005 LINC01006Q8NI28 216 aa3.46□□□□□ -1.85
SYNE2-223ENST00000557005 IGKV4-1P06312 121 aa3.46□□□□□ -1.86
SYNE2-223ENST00000557005 DHRS4-AS1Q9P1J3 65 aa3.46□□□□□ -1.86
SYNE2-223ENST00000557005 LINC01561Q8N1V8 128 aa3.46□□□□□ -1.86
SYNE2-223ENST00000557005 C11orf45Q8TAV5 145 aa3.46□□□□□ -1.86
SYNE2-223ENST00000557005 MKI67P46013 3256 aaKnown RBP3.46□□□□□ -1.86
SYNE2-223ENST00000557005 CXCL6P80162 114 aa3.46□□□□□ -1.86
SYNE2-223ENST00000557005 B9D2Q9BPU9 175 aa3.46□□□□□ -1.86
SYNE2-223ENST00000557005 NDUFB1O75438 58 aa3.45□□□□□ -1.86
SYNE2-223ENST00000557005 SYCNQ0VAF6 134 aa3.45□□□□□ -1.86
SYNE2-223ENST00000557005 MUC7Q8TAX7 377 aa3.45□□□□□ -1.86
SYNE2-223ENST00000557005 DSCAML1Q8TD84 2053 aa3.45□□□□□ -1.86
SYNE2-223ENST00000557005 KLK9Q2XQG4 91 aa3.45□□□□□ -1.86
SYNE2-223ENST00000557005 C10orf25Q5T742 122 aa3.45□□□□□ -1.86
SYNE2-223ENST00000557005 TMEM254Q8TBM7 123 aa3.45□□□□□ -1.86
SYNE2-223ENST00000557005 SMR3AQ99954 134 aa3.45□□□□□ -1.86
SYNE2-223ENST00000557005 TM2D3Q9BRN9 247 aa3.45□□□□□ -1.86
SYNE2-223ENST00000557005 RPS28P62857 69 aaKnown RBP3.45□□□□□ -1.86
SYNE2-223ENST00000557005 KPRPQ5T749 579 aaPredicted RBP3.45□□□□□ -1.86
SYNE2-223ENST00000557005 INTS1Q8N201 2190 aaKnown RBP3.45□□□□□ -1.86
SYNE2-223ENST00000557005 ARFGEF3Q5TH69 2177 aa3.44□□□□□ -1.86
SYNE2-223ENST00000557005 PRO0628Q9UI54 55 aa3.44□□□□□ -1.86
SYNE2-223ENST00000557005 DEFB131BA0A096LNP1 70 aa3.44□□□□□ -1.86
SYNE2-223ENST00000557005 MRPL55Q7Z7F7 128 aaKnown RBP3.44□□□□□ -1.86
SYNE2-223ENST00000557005 INAFM1C9JVW0 142 aa3.44□□□□□ -1.86
SYNE2-223ENST00000557005 XIRP2A4UGR9 3374 aa3.44□□□□□ -1.86
SYNE2-223ENST00000557005 LOC110117498A0A087WWA1 95 aa3.44□□□□□ -1.86
SYNE2-223ENST00000557005 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.43□□□□□ -1.86
SYNE2-223ENST00000557005 A6NED7 52 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 C1orf137Q5JT78 98 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 REG3GQ6UW15 175 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 LINC00474Q9P2X8 69 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 J3QKU1 62 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 IGLV1-51P01701 117 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 Q6ZRU5 148 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 HTTP42858 3142 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 IGLV9-49A0A0B4J1Y8 123 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 LY6G6DO95868 133 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 IGHV4-30-4P0DP06 118 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 CDH23Q9H251 3354 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 A0A1B0GUV1 79 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 KIAA0087Q14695 138 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 IGHV3OR16-9A0A0B4J2B5 98 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 C6orf48Q9UBA6 75 aa3.43□□□□□ -1.86
SYNE2-223ENST00000557005 LYPD5Q6UWN5 251 aa3.42□□□□□ -1.86
SYNE2-223ENST00000557005 HCG22E2RYF7 251 aa3.42□□□□□ -1.86
SYNE2-223ENST00000557005 C2orf48Q96LS8 159 aa3.42□□□□□ -1.86
SYNE2-223ENST00000557005 KNTC1P50748 2209 aa3.42□□□□□ -1.86
SYNE2-223ENST00000557005 ELOF1P60002 83 aaKnown RBP3.42□□□□□ -1.86
SYNE2-223ENST00000557005 IL17DQ8TAD2 202 aa3.42□□□□□ -1.86
SYNE2-223ENST00000557005 RETNLBQ9BQ08 111 aa3.42□□□□□ -1.86
SYNE2-223ENST00000557005 C16orf95Q9H693 158 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms