RNA–Protein interactions for RNA: ENST00000545920.1

SNHG1-225, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 625 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-225	ENST00000545920	KRTAP3-1	Q9BYR8	98 aa		4.58	□□□□□ -1.68
SNHG1-225	ENST00000545920	MED13L	Q71F56	2210 aa		4.58	□□□□□ -1.68
SNHG1-225	ENST00000545920	HIVEP3	Q5T1R4	2406 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	ABCA2	Q9BZC7	2435 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	TRAV13-1	A0A0B4J241	112 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	IGHV3-38	A0A0C4DH36	116 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	LINC00694	P0DN24	101 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	SOSTDC1	Q6X4U4	206 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	NTM-AS1	Q6ZSK4	140 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	C3orf22	Q8N5N4	141 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	LINC00526	Q96FQ7	95 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	SND1-IT1	Q9HBX3	110 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	XCL2	Q9UBD3	114 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	COL6A6	A6NMZ7	2263 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	BSN	Q9UPA5	3926 aa		4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	PRRC2A	P48634	2157 aa	Known RBP	4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	SPEN	Q96T58	3664 aa	Known RBP	4.57	□□□□□ -1.68
SNHG1-225	ENST00000545920	SPTBN1	Q01082	2364 aa	Known RBP	4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	TRBV6-8	A0A0A6YYG3	113 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	IGHV3OR16-9	A0A0B4J2B5	98 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920		A0A1B0GUV1	79 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	JMJD7-PLA2G4B	H0Y9G9	81 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	CCDC179	H3BU77	68 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	CCL24	O00175	119 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	NDUFC2	O95298	119 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	LY6G6D	O95868	133 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	NPC2	P61916	151 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	HIST1H4A	P62805	103 aa	Known RBP	4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	COX17	Q14061	63 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	DEFB113	Q30KQ7	82 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920		Q6JHZ5	121 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	C16orf95	Q9H693	158 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	SS18L2	Q9UHA2	77 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	DOPEY2	Q9Y3R5	2298 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	MGA	Q8IWI9	3026 aa		4.56	□□□□□ -1.68
SNHG1-225	ENST00000545920	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	4.55	□□□□□ -1.68	1e-20	■■■■■ 75.7
SNHG1-225	ENST00000545920	TRGV2	A0A075B6R0	118 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920		A0A0A0MQY5	61 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920	FAM236A	A0A1B0GUQ0	79 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920	FAM236B	A0A1B0GV22	79 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920	BCE1	O60756	84 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920	DEFB136	Q30KP8	78 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920		Q6ZTI0	123 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920		Q8IZM0	81 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920	MIR7-3HG	Q8N6C7	128 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920	KIR2DL5B	Q8NHK3	375 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920	LINC00167	Q96N53	147 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920		Q9UF83	564 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920	ADGRG4	Q8IZF6	3080 aa		4.55	□□□□□ -1.68
SNHG1-225	ENST00000545920	AKAP13	Q12802	2813 aa		4.54	□□□□□ -1.68
SNHG1-225	ENST00000545920	TRGV4	A0A0C4DH28	118 aa		4.54	□□□□□ -1.68
SNHG1-225	ENST00000545920	TRBV10-3	A0A0K0K1G6	114 aa		4.54	□□□□□ -1.68
SNHG1-225	ENST00000545920	SMIM9	A6NGZ8	99 aa		4.54	□□□□□ -1.68
SNHG1-225	ENST00000545920	CRYGA	P11844	174 aa		4.54	□□□□□ -1.68
SNHG1-225	ENST00000545920	COX7C	P15954	63 aa		4.54	□□□□□ -1.68
SNHG1-225	ENST00000545920	RPS28	P62857	69 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-225	ENST00000545920		Q6ZSV7	163 aa		4.54	□□□□□ -1.68
SNHG1-225	ENST00000545920	LINC00612	Q8N6U2	182 aa		4.54	□□□□□ -1.68
SNHG1-225	ENST00000545920	KLK5	Q9Y337	293 aa	Predicted RBP	4.54	□□□□□ -1.68
SNHG1-225	ENST00000545920	MUC3A	Q02505	3323 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	IGKV2-28	A0A075B6P5	120 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	PLAC8L1	A1L4L8	177 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	NDUFA7	O95182	113 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	IGKV2D-28	P01615	120 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	IGLV1-51	P01701	117 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	CCL18	P55774	89 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	LINC00158	P58513	81 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	SS18	Q15532	418 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	C9orf153	Q5TBE3	101 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	C18orf65	Q6ZTR6	163 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	LINC00337	Q8N6G1	96 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	SMIM11B	Q8TCY0	68 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	NOP10	Q9NPE3	64 aa	Known RBP	4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	ORMDL1	Q9P0S3	153 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	C22orf24	Q9Y442	160 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	ZFHX4	Q86UP3	3567 aa		4.53	□□□□□ -1.68
SNHG1-225	ENST00000545920	TMEM256-PLSCR3	K7ERE1	68 aa		4.52	□□□□□ -1.69
SNHG1-225	ENST00000545920	PDE6G	P18545	87 aa		4.52	□□□□□ -1.69
SNHG1-225	ENST00000545920	RPL18A	Q02543	176 aa	Known RBP	4.52	□□□□□ -1.69
SNHG1-225	ENST00000545920	FHL2	Q14192	279 aa		4.52	□□□□□ -1.69
SNHG1-225	ENST00000545920	GAGE2A	Q6NT46	116 aa		4.52	□□□□□ -1.69
SNHG1-225	ENST00000545920	CSNK1G2-AS1	Q8NCQ2	148 aa		4.52	□□□□□ -1.69
SNHG1-225	ENST00000545920	FAM218A	Q96MZ4	157 aa		4.52	□□□□□ -1.69
SNHG1-225	ENST00000545920	CHCHD5	Q9BSY4	110 aa		4.52	□□□□□ -1.69
SNHG1-225	ENST00000545920	NACA	E9PAV3	2078 aa		4.52	□□□□□ -1.69
SNHG1-225	ENST00000545920	SETX	Q7Z333	2677 aa	Known RBP	4.51	□□□□□ -1.69
SNHG1-225	ENST00000545920	AKAP6	Q13023	2319 aa		4.51	□□□□□ -1.69
SNHG1-225	ENST00000545920	IGHV4-28	A0A0C4DH34	117 aa		4.51	□□□□□ -1.69
SNHG1-225	ENST00000545920	LINC00959	A0A1B0GUT2	108 aa		4.51	□□□□□ -1.69
SNHG1-225	ENST00000545920	CCK	P06307	115 aa		4.51	□□□□□ -1.69
SNHG1-225	ENST00000545920	GIG44	P09565	113 aa	Predicted RBP	4.51	□□□□□ -1.69
SNHG1-225	ENST00000545920	C6orf226	Q5I0X4	101 aa		4.51	□□□□□ -1.69
SNHG1-225	ENST00000545920	SMCR5	Q8TEV8	140 aa		4.51	□□□□□ -1.69
SNHG1-225	ENST00000545920	SPTAN1	Q13813	2472 aa	Known RBP	4.51	□□□□□ -1.69
SNHG1-225	ENST00000545920	NBAS	A2RRP1	2371 aa		4.5	□□□□□ -1.69
SNHG1-225	ENST00000545920	CEP295	Q9C0D2	2601 aa		4.5	□□□□□ -1.69
SNHG1-225	ENST00000545920	CHD8	Q9HCK8	2581 aa		4.5	□□□□□ -1.69
SNHG1-225	ENST00000545920		A0A0U1RRA0	63 aa		4.5	□□□□□ -1.69
SNHG1-225	ENST00000545920	DNAJC9-AS1	A6NH13	148 aa		4.5	□□□□□ -1.69
SNHG1-225	ENST00000545920	LYRM9	A8MSI8	78 aa		4.5	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 139.3 ms