RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 TSC2P49815 1807 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 UBR1Q8IWV7 1749 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 CRYBG1Q9Y4K1 1723 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 CLTCL1P53675 1640 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 MAP3K4Q9Y6R4 1608 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 ASXL1Q8IXJ9 1541 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 EHBP1L1Q8N3D4 1523 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 PLXNA1Q9UIW2 1896 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 ANKRD36CQ5JPF3 1778 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 CLTCQ00610 1675 aaKnown RBP0.88□□□□□ -2.27
CPNE3-207ENST00000523588 PREX1Q8TCU6 1659 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 ARFGEF1Q9Y6D6 1849 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 CCKP06307 115 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 C3orf79P0CE67 100 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 COX8AP10176 69 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 UBE2G1P62253 170 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 RBM3P98179 157 aaKnown RBP0.88□□□□□ -2.27
CPNE3-207ENST00000523588 S100A7L2Q5SY68 101 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 RPL7L1Q6DKI1 246 aaKnown RBP0.88□□□□□ -2.27
CPNE3-207ENST00000523588 SPATA8Q6RVD6 105 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 LYPD5Q6UWN5 251 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 SMIM5Q71RC9 77 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 SERP2Q8N6R1 65 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 SPTSSAQ969W0 71 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 LINC01600Q96MT4 127 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 TRGV9Q99603 122 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 MGST2Q99735 147 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 HILPDAQ9Y5L2 63 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 POLR1AO95602 1720 aaPredicted RBP0.88□□□□□ -2.27
CPNE3-207ENST00000523588 ADCY10Q96PN6 1610 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 NFAT5O94916 1531 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 PLXNA2O75051 1894 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 PKD1L2Q7Z442 2459 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 MYOM1P52179 1685 aa0.88□□□□□ -2.27
CPNE3-207ENST00000523588 ANKRD36A6QL64 1941 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 NWD1Q149M9 1564 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 SAMD9Q5K651 1589 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 CDC42BPGQ6DT37 1551 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 NESP48681 1621 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 F2Z2F3 143 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 J3QLW9 94 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 PIRTP0C851 137 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 CKS2P33552 79 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 SPINT3P49223 89 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 FXYD6P3P58550 94 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 SNRPFP62306 86 aaKnown RBP0.87□□□□□ -2.27
CPNE3-207ENST00000523588 RHOHQ15669 191 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 C12orf73Q69YU5 71 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 CSAG1Q6PB30 78 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 ATP11AUNQ6ZP68 121 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 SMIM7Q9BQ49 75 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 AGLP35573 1532 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 KCPQ6ZWJ8 1503 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 ALS2Q96Q42 1657 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 AFDNP55196 1824 aaKnown RBP0.87□□□□□ -2.27
CPNE3-207ENST00000523588 ZNF236Q9UL36 1845 aa0.87□□□□□ -2.27
CPNE3-207ENST00000523588 CEP170BQ9Y4F5 1589 aaPredicted RBP0.87□□□□□ -2.27
CPNE3-207ENST00000523588 PTPRMP28827 1452 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 SPTBP11277 2137 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 KMT2DO14686 5537 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 TRPM2O94759 1503 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 SYNE2Q8WXH0 6885 aaKnown RBP0.86□□□□□ -2.27
CPNE3-207ENST00000523588 C5P01031 1676 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 IGHV1-24A0A0C4DH33 117 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 A0A0D9SFI3 127 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 A0A0D9SG42 100 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 H7BZZ5 65 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 FXYD1O00168 92 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 CAV3P56539 151 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 ZNF56Q15929 161 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 DEFB121Q5J5C9 76 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 TMEM170BQ5T4T1 132 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 C10orf99Q6UWK7 81 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 CYP2G1PQ6ZSU1 146 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 LINC00643Q86TS7 51 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 BAGE3Q86Y29 109 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 BAGE2Q86Y30 109 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 FAM223AQ8IWN6 122 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 TOMM5Q8N4H5 51 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 FAM103A1Q9BTL3 118 aaKnown RBP0.86□□□□□ -2.27
CPNE3-207ENST00000523588 PROK2Q9HC23 129 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 MRPL35Q9NZE8 188 aaKnown RBP0.86□□□□□ -2.27
CPNE3-207ENST00000523588 NDUFA12Q9UI09 145 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 ARL2-SNX15V9GYD0 113 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 MROH2BQ7Z745 1585 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 MDN1Q9NU22 5596 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 TJP1Q07157 1748 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 UBR3Q6ZT12 1888 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 TOP2BQ02880 1626 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 EIF2AK4Q9P2K8 1649 aaKnown RBP0.86□□□□□ -2.27
CPNE3-207ENST00000523588 ALKQ9UM73 1620 aa0.86□□□□□ -2.27
CPNE3-207ENST00000523588 COL14A1Q05707 1796 aaKnown RBP0.85□□□□□ -2.27
CPNE3-207ENST00000523588 NEXMIFQ5QGS0 1516 aa0.85□□□□□ -2.27
CPNE3-207ENST00000523588 COL4A6Q14031 1691 aa0.85□□□□□ -2.27
CPNE3-207ENST00000523588 PLCH1Q4KWH8 1693 aa0.85□□□□□ -2.27
CPNE3-207ENST00000523588 ESPL1Q14674 2120 aa0.85□□□□□ -2.27
CPNE3-207ENST00000523588 TRBV7-1A0A0A6YYK4 115 aa0.85□□□□□ -2.27
CPNE3-207ENST00000523588 TRAV13-2A0A0B4J235 113 aa0.85□□□□□ -2.27
CPNE3-207ENST00000523588 LOC285095A0A1B0GVY8 99 aa0.85□□□□□ -2.27
CPNE3-207ENST00000523588 CRYM-AS1A6NIL9 109 aa0.85□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms