RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 AEBP2Q6ZN18 517 aaPredicted RBP29.63■■■□□ 2.33
CPNE3-207ENST00000523588 CHIC1Q5VXU3 224 aa28.97■■■□□ 2.23
CPNE3-207ENST00000523588 PHF23Q9BUL5 403 aaPredicted RBP25.53■■□□□ 1.68
CPNE3-207ENST00000523588 SENP3Q9H4L4 574 aaPredicted RBP25.05■■□□□ 1.6
CPNE3-207ENST00000523588 PLPPR3Q6T4P5 718 aa23.53■■□□□ 1.36
CPNE3-207ENST00000523588 FOXD1Q16676 465 aa23.29■■□□□ 1.32
CPNE3-207ENST00000523588 PPP6R1Q9UPN7 881 aa22.5■■□□□ 1.19
CPNE3-207ENST00000523588 ADRA2BP18089 450 aa22.46■■□□□ 1.19
CPNE3-207ENST00000523588 PIAS4Q8N2W9 510 aaPredicted RBP21.93■■□□□ 1.1
CPNE3-207ENST00000523588 MSH5O43196 834 aa21.39■■□□□ 1.01
CPNE3-207ENST00000523588 PPP4R3CPQ6ZMV5 832 aa20.76■□□□□ 0.91
CPNE3-207ENST00000523588 SCAF1Q9H7N4 1312 aaKnown RBP20.48■□□□□ 0.87
CPNE3-207ENST00000523588 KCNA4P22459 653 aa20.39■□□□□ 0.85
CPNE3-207ENST00000523588 MAPK8IP2Q13387 824 aaPredicted RBP20.37■□□□□ 0.85
CPNE3-207ENST00000523588 POTEDQ86YR6 584 aa20.37■□□□□ 0.85
CPNE3-207ENST00000523588 NCBP3Q53F19 620 aaKnown RBP20.19■□□□□ 0.82
CPNE3-207ENST00000523588 CNKSR2Q8WXI2 1034 aa20.15■□□□□ 0.82
CPNE3-207ENST00000523588 DMRT2Q9Y5R5 561 aa20.04■□□□□ 0.8
CPNE3-207ENST00000523588 NPM3O75607 178 aaKnown RBP19.96■□□□□ 0.79
CPNE3-207ENST00000523588 RNF216Q9NWF9 866 aaPredicted RBP19.75■□□□□ 0.75
CPNE3-207ENST00000523588 HOXD11P31277 338 aaPredicted RBP19.67■□□□□ 0.74
CPNE3-207ENST00000523588 DNAJC5BQ9UF47 199 aa19.41■□□□□ 0.7
CPNE3-207ENST00000523588 SLC4A1APQ9BWU0 796 aaKnown RBP19.39■□□□□ 0.69
CPNE3-207ENST00000523588 DCAF8L1A6NGE4 600 aa19.09■□□□□ 0.65
CPNE3-207ENST00000523588 EHMT2Q96KQ7 1210 aa18.92■□□□□ 0.62
CPNE3-207ENST00000523588 SLC4A2P04920 1241 aa18.86■□□□□ 0.61
CPNE3-207ENST00000523588 ZBTB22O15209 634 aa18.8■□□□□ 0.6
CPNE3-207ENST00000523588 CSRNP3Q8WYN3 585 aa18.73■□□□□ 0.59
CPNE3-207ENST00000523588 FOXD4L1Q9NU39 408 aa18.71■□□□□ 0.59
CPNE3-207ENST00000523588 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.68■□□□□ 0.58
CPNE3-207ENST00000523588 U3KPZ7 1027 aaPredicted RBP18.45■□□□□ 0.54
CPNE3-207ENST00000523588 MYCNP04198 464 aaPredicted RBP18.4■□□□□ 0.54
CPNE3-207ENST00000523588 RNF39Q9H2S5 420 aa18.38■□□□□ 0.53
CPNE3-207ENST00000523588 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.17■□□□□ 0.5
CPNE3-207ENST00000523588 HNRNPUL2Q1KMD3 747 aaKnown RBP18.17■□□□□ 0.5
CPNE3-207ENST00000523588 C1QBPQ07021 282 aaKnown RBP18.13■□□□□ 0.49
CPNE3-207ENST00000523588 SAMD1Q6SPF0 538 aaPredicted RBP18.13■□□□□ 0.49
CPNE3-207ENST00000523588 ATXN8OSP0DMR3 200 aa18.06■□□□□ 0.48
CPNE3-207ENST00000523588 ATF5Q9Y2D1 282 aaPredicted RBP17.97■□□□□ 0.47
CPNE3-207ENST00000523588 APLP2Q06481 763 aa17.94■□□□□ 0.46
CPNE3-207ENST00000523588 SPINK5Q9NQ38 1064 aaPredicted RBP17.91■□□□□ 0.46
CPNE3-207ENST00000523588 CACNB1Q02641 598 aaPredicted RBP17.79■□□□□ 0.44
CPNE3-207ENST00000523588 CAPN15O75808 1086 aa17.78■□□□□ 0.44
CPNE3-207ENST00000523588 TRHP20396 242 aaPredicted RBP17.72■□□□□ 0.43
CPNE3-207ENST00000523588 ZNF219Q9P2Y4 722 aaPredicted RBP17.72■□□□□ 0.43
CPNE3-207ENST00000523588 DSG3P32926 999 aa17.52■□□□□ 0.4
CPNE3-207ENST00000523588 ABCB7O75027 752 aa17.47■□□□□ 0.39
CPNE3-207ENST00000523588 POLA2Q14181 598 aa17.47■□□□□ 0.39
CPNE3-207ENST00000523588 MKRN4PQ13434 485 aaPredicted RBP17.19■□□□□ 0.34
CPNE3-207ENST00000523588 ZBTB12Q9Y330 459 aaPredicted RBP17.15■□□□□ 0.34
CPNE3-207ENST00000523588 FBLN2P98095 1184 aa17.12■□□□□ 0.33
CPNE3-207ENST00000523588 FKBP8Q14318 412 aa16.88■□□□□ 0.29
CPNE3-207ENST00000523588 OSCARQ8IYS5 282 aa16.88■□□□□ 0.29
CPNE3-207ENST00000523588 SPDYE4A6NLX3 237 aa16.79■□□□□ 0.28
CPNE3-207ENST00000523588 SPDYE2BA6NHP3 402 aa16.73■□□□□ 0.27
CPNE3-207ENST00000523588 SPDYE6P0CI01 402 aa16.73■□□□□ 0.27
CPNE3-207ENST00000523588 SPDYE2Q495Y8 402 aa16.73■□□□□ 0.27
CPNE3-207ENST00000523588 ZNF692Q9BU19 519 aaPredicted RBP16.66■□□□□ 0.26
CPNE3-207ENST00000523588 SSUH2Q9Y2M2 353 aa16.64■□□□□ 0.25
CPNE3-207ENST00000523588 RBM42Q9BTD8 480 aaKnown RBP16.62■□□□□ 0.25
CPNE3-207ENST00000523588 PROM2Q8N271 834 aa16.59■□□□□ 0.25
CPNE3-207ENST00000523588 AKT1S1Q96B36 256 aa16.47■□□□□ 0.23
CPNE3-207ENST00000523588 PABPN1Q86U42 306 aaKnown RBP eCLIP16.45■□□□□ 0.22
CPNE3-207ENST00000523588 REM2Q8IYK8 340 aaPredicted RBP16.33■□□□□ 0.2
CPNE3-207ENST00000523588 FBXO3Q9UK99 471 aa16.23■□□□□ 0.19
CPNE3-207ENST00000523588 SPDYE1Q8NFV5 336 aaPredicted RBP16.2■□□□□ 0.18
CPNE3-207ENST00000523588 STAG3Q9UJ98 1225 aa16.18■□□□□ 0.18
CPNE3-207ENST00000523588 PITPNM1O00562 1244 aa16.14■□□□□ 0.17
CPNE3-207ENST00000523588 CLEC11AQ9Y240 323 aa16.1■□□□□ 0.17
CPNE3-207ENST00000523588 VASPP50552 380 aaPredicted RBP16.04■□□□□ 0.16
CPNE3-207ENST00000523588 PRR29P0C7W0 189 aa15.98■□□□□ 0.15
CPNE3-207ENST00000523588 POTEHQ6S545 545 aa15.95■□□□□ 0.14
CPNE3-207ENST00000523588 CHRDL2Q6WN34 429 aa15.93■□□□□ 0.14
CPNE3-207ENST00000523588 MIER1Q8N108 512 aa15.89■□□□□ 0.13
CPNE3-207ENST00000523588 IFNLR1Q8IU57 520 aaPredicted RBP15.86■□□□□ 0.13
CPNE3-207ENST00000523588 PLCD3Q8N3E9 789 aa15.86■□□□□ 0.13
CPNE3-207ENST00000523588 CREBZFQ9NS37 354 aa15.86■□□□□ 0.13
CPNE3-207ENST00000523588 FXR2P51116 673 aaKnown RBP eCLIP15.84■□□□□ 0.13
CPNE3-207ENST00000523588 PIP4P2Q8N4L2 257 aa15.77■□□□□ 0.12
CPNE3-207ENST00000523588 CHADLQ6NUI6 762 aa15.75■□□□□ 0.11
CPNE3-207ENST00000523588 PLEKHG5O94827 1062 aa15.74■□□□□ 0.11
CPNE3-207ENST00000523588 MNX1P50219 401 aaPredicted RBP15.73■□□□□ 0.11
CPNE3-207ENST00000523588 PRKAR2AP13861 404 aaKnown RBP15.72■□□□□ 0.11
CPNE3-207ENST00000523588 KLHL34Q8N239 644 aa15.7■□□□□ 0.1
CPNE3-207ENST00000523588 ZBTB47Q9UFB7 747 aaPredicted RBP15.67■□□□□ 0.1
CPNE3-207ENST00000523588 SPOCK2Q92563 424 aa15.62■□□□□ 0.09
CPNE3-207ENST00000523588 FARP1Q9Y4F1 1045 aaPredicted RBP15.6■□□□□ 0.09
CPNE3-207ENST00000523588 NUBP1P53384 320 aa15.54■□□□□ 0.08
CPNE3-207ENST00000523588 NPM1P06748 294 aaKnown RBP eCLIP15.53■□□□□ 0.08
CPNE3-207ENST00000523588 AMER1Q5JTC6 1135 aaPredicted RBP15.5■□□□□ 0.07
CPNE3-207ENST00000523588 RTN4Q9NQC3 1192 aaKnown RBP15.5■□□□□ 0.07
CPNE3-207ENST00000523588 RASEFQ8IZ41 740 aa15.44■□□□□ 0.06
CPNE3-207ENST00000523588 PKD2Q13563 968 aa15.37■□□□□ 0.05
CPNE3-207ENST00000523588 FAM212AQ96EL1 285 aa15.34■□□□□ 0.05
CPNE3-207ENST00000523588 CIZ1Q9ULV3 898 aaPredicted RBP15.34■□□□□ 0.05
CPNE3-207ENST00000523588 DCAF8Q5TAQ9 597 aa15.33■□□□□ 0.04
CPNE3-207ENST00000523588 GSE1Q14687 1217 aa15.32■□□□□ 0.04
CPNE3-207ENST00000523588 C19orf67A6NJJ6 358 aa15.29■□□□□ 0.04
CPNE3-207ENST00000523588 TSPYL2Q9H2G4 693 aaPredicted RBP15.29■□□□□ 0.04
CPNE3-207ENST00000523588 CD44P16070 742 aaKnown RBP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms