RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 PRO0255Q9UI72 69 aa8.6□□□□□ -1.03
SYNPO-204ENST00000519664 PSMG3-AS1Q96PY0 264 aa8.59□□□□□ -1.03
SYNPO-204ENST00000519664 CAMK2N2Q96S95 79 aa8.59□□□□□ -1.03
SYNPO-204ENST00000519664 NCR3O14931 201 aa8.59□□□□□ -1.03
SYNPO-204ENST00000519664 LINC00269Q8N2A0 174 aa8.59□□□□□ -1.03
SYNPO-204ENST00000519664 INAFM1C9JVW0 142 aa8.59□□□□□ -1.03
SYNPO-204ENST00000519664 LINC01006Q8NI28 216 aa8.59□□□□□ -1.03
SYNPO-204ENST00000519664 ORMDL1Q9P0S3 153 aa8.59□□□□□ -1.03
SYNPO-204ENST00000519664 CHD6Q8TD26 2715 aa8.58□□□□□ -1.04
SYNPO-204ENST00000519664 CFAP47Q6ZTR5 3102 aa8.58□□□□□ -1.04
SYNPO-204ENST00000519664 hADV29S1A0JD25 119 aa8.58□□□□□ -1.04
SYNPO-204ENST00000519664 TRIAP1O43715 76 aa8.58□□□□□ -1.04
SYNPO-204ENST00000519664 DSCR8Q96T75 97 aa8.58□□□□□ -1.04
SYNPO-204ENST00000519664 SMR3AQ99954 134 aa8.58□□□□□ -1.04
SYNPO-204ENST00000519664 ZNF580Q9UK33 172 aa8.58□□□□□ -1.04
SYNPO-204ENST00000519664 ITPR3Q14573 2671 aa8.58□□□□□ -1.04
SYNPO-204ENST00000519664 TRBV6-5A0A0K0K1A5 114 aa8.57□□□□□ -1.04
SYNPO-204ENST00000519664 LINC00526Q96FQ7 95 aa8.57□□□□□ -1.04
SYNPO-204ENST00000519664 C9orf85Q96MD7 179 aa8.57□□□□□ -1.04
SYNPO-204ENST00000519664 ZMAT4Q9H898 229 aa8.57□□□□□ -1.04
SYNPO-204ENST00000519664 COX7CP15954 63 aa8.57□□□□□ -1.04
SYNPO-204ENST00000519664 TRBV30A0A0K0K1B3 111 aa8.57□□□□□ -1.04
SYNPO-204ENST00000519664 IGIPA6NJ69 53 aa8.57□□□□□ -1.04
SYNPO-204ENST00000519664 SPAG11BQ08648 103 aa8.57□□□□□ -1.04
SYNPO-204ENST00000519664 ADGRG4Q8IZF6 3080 aa8.56□□□□□ -1.04
SYNPO-204ENST00000519664 CRIP2P52943 208 aaPredicted RBP8.56□□□□□ -1.04
SYNPO-204ENST00000519664 CSDC2Q9Y534 153 aaKnown RBP8.56□□□□□ -1.04
SYNPO-204ENST00000519664 LINC00308Q8TCZ7 52 aa8.55□□□□□ -1.04
SYNPO-204ENST00000519664 SLPIP03973 132 aa8.55□□□□□ -1.04
SYNPO-204ENST00000519664 PPDPFQ9H3Y8 114 aa8.55□□□□□ -1.04
SYNPO-204ENST00000519664 F8WEM9 126 aa8.55□□□□□ -1.04
SYNPO-204ENST00000519664 H0YGX0 51 aa8.55□□□□□ -1.04
SYNPO-204ENST00000519664 ODF3L2Q3SX64 289 aa8.55□□□□□ -1.04
SYNPO-204ENST00000519664 POM121L12Q8N7R1 296 aa8.55□□□□□ -1.04
SYNPO-204ENST00000519664 C14orf132Q9NPU4 83 aa8.55□□□□□ -1.04
SYNPO-204ENST00000519664 UBE2D3P61077 147 aa8.54□□□□□ -1.04
SYNPO-204ENST00000519664 UBE2D2P62837 147 aa8.54□□□□□ -1.04
SYNPO-204ENST00000519664 HIGD2BQ4VC39 106 aa8.54□□□□□ -1.04
SYNPO-204ENST00000519664 MYO15AQ9UKN7 3530 aa8.54□□□□□ -1.04
SYNPO-204ENST00000519664 FAM240AA0A1B0GVK7 77 aa8.54□□□□□ -1.04
SYNPO-204ENST00000519664 RPL18AQ02543 176 aaKnown RBP8.54□□□□□ -1.04
SYNPO-204ENST00000519664 UBE2D1P51668 147 aa8.54□□□□□ -1.04
SYNPO-204ENST00000519664 TSPEAR-AS2P59090 65 aa8.54□□□□□ -1.04
SYNPO-204ENST00000519664 FAM19A5Q7Z5A7 132 aaPredicted RBP8.54□□□□□ -1.04
SYNPO-204ENST00000519664 BRK1Q8WUW1 75 aa8.54□□□□□ -1.04
SYNPO-204ENST00000519664 IGHV4-28A0A0C4DH34 117 aa8.53□□□□□ -1.04
SYNPO-204ENST00000519664 BBC3Q96PG8 261 aaPredicted RBP8.53□□□□□ -1.04
SYNPO-204ENST00000519664 PKIGQ9Y2B9 76 aa8.53□□□□□ -1.04
SYNPO-204ENST00000519664 V9GYY9 64 aa8.53□□□□□ -1.04
SYNPO-204ENST00000519664 UBE2D4Q9Y2X8 147 aa8.53□□□□□ -1.04
SYNPO-204ENST00000519664 IGLV2-18A0A075B6J9 118 aa8.52□□□□□ -1.05
SYNPO-204ENST00000519664 TRBV6-8A0A0A6YYG3 113 aa8.52□□□□□ -1.05
SYNPO-204ENST00000519664 XAGE1AQ9HD64 81 aa8.52□□□□□ -1.05
SYNPO-204ENST00000519664 COX8CQ7Z4L0 72 aa8.52□□□□□ -1.05
SYNPO-204ENST00000519664 SERP2Q8N6R1 65 aa8.52□□□□□ -1.05
SYNPO-204ENST00000519664 REG3AQ06141 175 aa8.51□□□□□ -1.05
SYNPO-204ENST00000519664 KALRNO60229 2985 aa8.51□□□□□ -1.05
SYNPO-204ENST00000519664 PYGO1Q9Y3Y4 419 aa8.51□□□□□ -1.05
SYNPO-204ENST00000519664 PLA2G2AP14555 144 aa8.51□□□□□ -1.05
SYNPO-204ENST00000519664 FAM236DA0A1B0GTK5 79 aa8.51□□□□□ -1.05
SYNPO-204ENST00000519664 FAM236CP0DP71 79 aa8.51□□□□□ -1.05
SYNPO-204ENST00000519664 IGLV4-69A0A075B6H9 119 aa8.5□□□□□ -1.05
SYNPO-204ENST00000519664 CHCHD10Q8WYQ3 142 aaPredicted RBP8.5□□□□□ -1.05
SYNPO-204ENST00000519664 SDIM1Q6ZPB5 146 aa8.5□□□□□ -1.05
SYNPO-204ENST00000519664 Q6ZSN1 163 aa8.5□□□□□ -1.05
SYNPO-204ENST00000519664 ATMQ13315 3056 aa8.5□□□□□ -1.05
SYNPO-204ENST00000519664 CXCL5P42830 114 aa8.49□□□□□ -1.05
SYNPO-204ENST00000519664 HELZ2Q9BYK8 2649 aaKnown RBP8.49□□□□□ -1.05
SYNPO-204ENST00000519664 NDUFA1O15239 70 aa8.49□□□□□ -1.05
SYNPO-204ENST00000519664 HRCT1Q6UXD1 115 aa8.49□□□□□ -1.05
SYNPO-204ENST00000519664 PRO0461Q9UI25 63 aa8.49□□□□□ -1.05
SYNPO-204ENST00000519664 C20orf197Q8N268 126 aa8.49□□□□□ -1.05
SYNPO-204ENST00000519664 DMXL2Q8TDJ6 3036 aa8.49□□□□□ -1.05
SYNPO-204ENST00000519664 TEP1Q99973 2627 aaKnown RBP8.49□□□□□ -1.05
SYNPO-204ENST00000519664 REV3LO60673 3130 aa8.48□□□□□ -1.05
SYNPO-204ENST00000519664 UBE2BP63146 152 aa8.48□□□□□ -1.05
SYNPO-204ENST00000519664 ZZEF1O43149 2961 aa8.48□□□□□ -1.05
SYNPO-204ENST00000519664 TIRAPP58753 221 aa8.48□□□□□ -1.05
SYNPO-204ENST00000519664 TRBV6-4A0A1B0GX49 114 aa8.47□□□□□ -1.05
SYNPO-204ENST00000519664 LOC107984640A0A0U1RRK4 108 aa8.47□□□□□ -1.05
SYNPO-204ENST00000519664 LY6G6DO95868 133 aa8.47□□□□□ -1.05
SYNPO-204ENST00000519664 LINC00242Q5T6M2 205 aa8.47□□□□□ -1.05
SYNPO-204ENST00000519664 H7C423 109 aa8.47□□□□□ -1.05
SYNPO-204ENST00000519664 LST1O00453 97 aa8.47□□□□□ -1.05
SYNPO-204ENST00000519664 Q9UF83 564 aa8.47□□□□□ -1.05
SYNPO-204ENST00000519664 MRPS36P82909 103 aaKnown RBP8.47□□□□□ -1.05
SYNPO-204ENST00000519664 C1orf158Q8N1D5 194 aa8.46□□□□□ -1.05
SYNPO-204ENST00000519664 ADAMTSL4-AS1Q5T5F5 129 aa8.46□□□□□ -1.05
SYNPO-204ENST00000519664 CCL18P55774 89 aa8.46□□□□□ -1.06
SYNPO-204ENST00000519664 COX6A2Q02221 97 aa8.46□□□□□ -1.06
SYNPO-204ENST00000519664 JMJD7-PLA2G4BH0Y9G9 81 aa8.46□□□□□ -1.06
SYNPO-204ENST00000519664 ETDCA0A1B0GVM5 59 aa8.45□□□□□ -1.06
SYNPO-204ENST00000519664 SMCPP49901 116 aaPredicted RBP8.45□□□□□ -1.06
SYNPO-204ENST00000519664 TRAV23DV6A0A075B6W5 121 aa8.45□□□□□ -1.06
SYNPO-204ENST00000519664 USP17L23D6RBM5 183 aa8.44□□□□□ -1.06
SYNPO-204ENST00000519664 CDC42SE2Q9NRR3 84 aa8.44□□□□□ -1.06
SYNPO-204ENST00000519664 A0A0U1RQV1 116 aa8.44□□□□□ -1.06
SYNPO-204ENST00000519664 C6orf99Q4VX62 202 aa8.44□□□□□ -1.06
SYNPO-204ENST00000519664 PRB2P02812 416 aaPredicted RBP8.43□□□□□ -1.06
SYNPO-204ENST00000519664 KIF25-AS1Q9Y6Z4 181 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms