RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ACANP16112 2415 aa10.47□□□□□ -0.73
NUP54-217ENST00000514987 LINC00308Q8TCZ7 52 aa10.46□□□□□ -0.74
NUP54-217ENST00000514987 SIGMAR1Q99720 223 aa10.46□□□□□ -0.74
NUP54-217ENST00000514987 HIVEP2P31629 2446 aa10.46□□□□□ -0.74
NUP54-217ENST00000514987 LYRM9A8MSI8 78 aa10.45□□□□□ -0.74
NUP54-217ENST00000514987 TRIAP1O43715 76 aa10.45□□□□□ -0.74
NUP54-217ENST00000514987 SLC25A20O43772 301 aa10.45□□□□□ -0.74
NUP54-217ENST00000514987 GAGE6Q13070 117 aa10.45□□□□□ -0.74
NUP54-217ENST00000514987 CHCHD5Q9BSY4 110 aa10.45□□□□□ -0.74
NUP54-217ENST00000514987 UNC79Q9P2D8 2635 aa10.45□□□□□ -0.74
NUP54-217ENST00000514987 NF1P21359 2839 aa10.45□□□□□ -0.74
NUP54-217ENST00000514987 C9JAW5 83 aa10.44□□□□□ -0.74
NUP54-217ENST00000514987 DEFB130BP0DP73 79 aa10.44□□□□□ -0.74
NUP54-217ENST00000514987 DEFB130AP0DP74 79 aa10.44□□□□□ -0.74
NUP54-217ENST00000514987 X6R8D5 127 aa10.44□□□□□ -0.74
NUP54-217ENST00000514987 APOC4P55056 127 aa10.43□□□□□ -0.74
NUP54-217ENST00000514987 C21orf62-AS1Q17RA5 79 aa10.43□□□□□ -0.74
NUP54-217ENST00000514987 LINC01620Q4KN68 170 aa10.43□□□□□ -0.74
NUP54-217ENST00000514987 MEIG1Q5JSS6 88 aa10.43□□□□□ -0.74
NUP54-217ENST00000514987 PRO0255Q9UI72 69 aa10.43□□□□□ -0.74
NUP54-217ENST00000514987 SCGB1A1P11684 91 aa10.43□□□□□ -0.74
NUP54-217ENST00000514987 RPL13AP40429 203 aaKnown RBP10.43□□□□□ -0.74
NUP54-217ENST00000514987 NPC2P61916 151 aa10.43□□□□□ -0.74
NUP54-217ENST00000514987 INAFM1C9JVW0 142 aa10.42□□□□□ -0.74
NUP54-217ENST00000514987 ANKRD29Q8N6D5 301 aa10.42□□□□□ -0.74
NUP54-217ENST00000514987 COX7B2Q8TF08 81 aa10.42□□□□□ -0.74
NUP54-217ENST00000514987 ANK3Q12955 4377 aaKnown RBP10.42□□□□□ -0.74
NUP54-217ENST00000514987 ITPR2Q14571 2701 aa10.42□□□□□ -0.74
NUP54-217ENST00000514987 TRBV10-2A0A0K0K1G8 114 aa10.41□□□□□ -0.74
NUP54-217ENST00000514987 GYPEP15421 78 aa10.41□□□□□ -0.74
NUP54-217ENST00000514987 MTORP42345 2549 aa10.41□□□□□ -0.74
NUP54-217ENST00000514987 SETXQ7Z333 2677 aaKnown RBP10.4□□□□□ -0.74
NUP54-217ENST00000514987 A0A1B0GUV1 79 aa10.4□□□□□ -0.74
NUP54-217ENST00000514987 DAND5Q8N907 189 aa10.4□□□□□ -0.74
NUP54-217ENST00000514987 HELZ2Q9BYK8 2649 aaKnown RBP10.4□□□□□ -0.74
NUP54-217ENST00000514987 NBPF19A0A087WUL8 3843 aa10.4□□□□□ -0.74
NUP54-217ENST00000514987 IGLV4-60A0A075B6I1 120 aa10.39□□□□□ -0.75
NUP54-217ENST00000514987 A0A087WZ39 114 aa10.39□□□□□ -0.75
NUP54-217ENST00000514987 IGHV3OR16-9A0A0B4J2B5 98 aa10.39□□□□□ -0.75
NUP54-217ENST00000514987 CARD19Q96LW7 228 aa10.39□□□□□ -0.75
NUP54-217ENST00000514987 TMEM262E9PQX1 116 aa10.39□□□□□ -0.75
NUP54-217ENST00000514987 CITED1Q99966 193 aa10.39□□□□□ -0.75
NUP54-217ENST00000514987 H3BT86 120 aa10.38□□□□□ -0.75
NUP54-217ENST00000514987 LST1O00453 97 aa10.38□□□□□ -0.75
NUP54-217ENST00000514987 FAM222AQ5U5X8 452 aa10.38□□□□□ -0.75
NUP54-217ENST00000514987 LINC01561Q8N1V8 128 aa10.38□□□□□ -0.75
NUP54-217ENST00000514987 LINC00959A0A1B0GUT2 108 aa10.37□□□□□ -0.75
NUP54-217ENST00000514987 PAX4O43316 350 aa10.37□□□□□ -0.75
NUP54-217ENST00000514987 SS18Q15532 418 aa10.37□□□□□ -0.75
NUP54-217ENST00000514987 SETD2Q9BYW2 2564 aaPredicted RBP10.36□□□□□ -0.75
NUP54-217ENST00000514987 JMJD1CQ15652 2540 aa10.35□□□□□ -0.75
NUP54-217ENST00000514987 MIFP14174 115 aa10.35□□□□□ -0.75
NUP54-217ENST00000514987 SOSTDC1Q6X4U4 206 aa10.35□□□□□ -0.75
NUP54-217ENST00000514987 NOTCH3Q9UM47 2321 aa10.35□□□□□ -0.75
NUP54-217ENST00000514987 TRAV13-2A0A0B4J235 113 aa10.35□□□□□ -0.75
NUP54-217ENST00000514987 IGKV3OR2-268A0A0C4DH90 116 aa10.35□□□□□ -0.75
NUP54-217ENST00000514987 A0A0U1RRA0 63 aa10.35□□□□□ -0.75
NUP54-217ENST00000514987 IBA57-AS1B1ANH7 110 aa10.35□□□□□ -0.75
NUP54-217ENST00000514987 SHISA2Q6UWI4 295 aa10.35□□□□□ -0.75
NUP54-217ENST00000514987 C2orf82Q6UX34 121 aa10.35□□□□□ -0.75
NUP54-217ENST00000514987 WFDC9Q8NEX5 89 aa10.35□□□□□ -0.75
NUP54-217ENST00000514987 FASNP49327 2511 aaKnown RBP10.34□□□□□ -0.75
NUP54-217ENST00000514987 TRAV26-1A0A087WT03 109 aa10.34□□□□□ -0.75
NUP54-217ENST00000514987 COX7A2LO14548 114 aa10.34□□□□□ -0.75
NUP54-217ENST00000514987 WIPF1O43516 503 aa10.34□□□□□ -0.75
NUP54-217ENST00000514987 TOMM7Q9P0U1 55 aa10.34□□□□□ -0.75
NUP54-217ENST00000514987 DAD1P61803 113 aa10.33□□□□□ -0.76
NUP54-217ENST00000514987 DEFB135Q30KP9 77 aa10.33□□□□□ -0.76
NUP54-217ENST00000514987 NTN5Q8WTR8 489 aaPredicted RBP10.32□□□□□ -0.76
NUP54-217ENST00000514987 CDIP1Q9H305 208 aa10.32□□□□□ -0.76
NUP54-217ENST00000514987 IGHV4-28A0A0C4DH34 117 aa10.31□□□□□ -0.76
NUP54-217ENST00000514987 ATP5G1P05496 136 aa10.31□□□□□ -0.76
NUP54-217ENST00000514987 MIR7-3HGQ8N6C7 128 aa10.31□□□□□ -0.76
NUP54-217ENST00000514987 CLEC2BQ92478 149 aa10.31□□□□□ -0.76
NUP54-217ENST00000514987 UBE2WQ96B02 151 aa10.31□□□□□ -0.76
NUP54-217ENST00000514987 LINC00158P58513 81 aa10.31□□□□□ -0.76
NUP54-217ENST00000514987 C5orf38Q86SI9 138 aa10.31□□□□□ -0.76
NUP54-217ENST00000514987 SPATA3Q8NHX4 192 aa10.31□□□□□ -0.76
NUP54-217ENST00000514987 CRPP02741 224 aa10.3□□□□□ -0.76
NUP54-217ENST00000514987 SPART-AS1P0CW21 52 aa10.3□□□□□ -0.76
NUP54-217ENST00000514987 C6orf226Q5I0X4 101 aa10.3□□□□□ -0.76
NUP54-217ENST00000514987 Q8IZM0 81 aa10.3□□□□□ -0.76
NUP54-217ENST00000514987 TRACP01848 142 aa10.29□□□□□ -0.76
NUP54-217ENST00000514987 Q8NAQ8 132 aa10.29□□□□□ -0.76
NUP54-217ENST00000514987 SND1-IT1Q9HBX3 110 aa10.29□□□□□ -0.76
NUP54-217ENST00000514987 CUBNO60494 3623 aa10.29□□□□□ -0.76
NUP54-217ENST00000514987 RPL28P46779 137 aaKnown RBP10.28□□□□□ -0.76
NUP54-217ENST00000514987 XCL1P47992 114 aa10.27□□□□□ -0.76
NUP54-217ENST00000514987 MRPL23Q16540 153 aaKnown RBP10.27□□□□□ -0.76
NUP54-217ENST00000514987 CXCL5P42830 114 aa10.26□□□□□ -0.77
NUP54-217ENST00000514987 DEFB121Q5J5C9 76 aa10.26□□□□□ -0.77
NUP54-217ENST00000514987 CD164L2Q6UWJ8 174 aa10.26□□□□□ -0.77
NUP54-217ENST00000514987 C2CD3Q4AC94 2353 aa10.25□□□□□ -0.77
NUP54-217ENST00000514987 TRAV8-4A0A0B4J246 113 aa10.25□□□□□ -0.77
NUP54-217ENST00000514987 TEX49A0A1B0GTD5 131 aa10.25□□□□□ -0.77
NUP54-217ENST00000514987 CCL18P55774 89 aa10.25□□□□□ -0.77
NUP54-217ENST00000514987 NIPBLQ6KC79 2804 aaeCLIP10.24□□□□□ -0.77
NUP54-217ENST00000514987 A0A096LPF7 62 aa10.24□□□□□ -0.77
NUP54-217ENST00000514987 DEFB4AO15263 64 aa10.24□□□□□ -0.77
NUP54-217ENST00000514987 IGHV4-30-4P0DP06 118 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms