RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NREPQ16612 68 aa9.3□□□□□ -0.92
USP53-209ENST00000514665 XAGE1AQ9HD64 81 aa9.3□□□□□ -0.92
USP53-209ENST00000514665 TRBV30A0A0K0K1B3 111 aa9.29□□□□□ -0.92
USP53-209ENST00000514665 LRRC75A-AS1Q8N1F1 130 aa9.29□□□□□ -0.92
USP53-209ENST00000514665 LINC01006Q8NI28 216 aa9.29□□□□□ -0.92
USP53-209ENST00000514665 LINC00526Q96FQ7 95 aa9.29□□□□□ -0.92
USP53-209ENST00000514665 TMEM256-PLSCR3K7ERE1 68 aa9.29□□□□□ -0.92
USP53-209ENST00000514665 POM121L12Q8N7R1 296 aa9.29□□□□□ -0.92
USP53-209ENST00000514665 NDUFA7O95182 113 aa9.28□□□□□ -0.92
USP53-209ENST00000514665 CITED1Q99966 193 aa9.28□□□□□ -0.92
USP53-209ENST00000514665 UBE2D4Q9Y2X8 147 aa9.28□□□□□ -0.92
USP53-209ENST00000514665 PTPRBP23467 1997 aa9.28□□□□□ -0.92
USP53-209ENST00000514665 NDUFV3P56181 108 aaKnown RBP9.28□□□□□ -0.92
USP53-209ENST00000514665 BBC3Q96PG8 261 aaPredicted RBP9.28□□□□□ -0.92
USP53-209ENST00000514665 TRBV6-4A0A1B0GX49 114 aa9.28□□□□□ -0.92
USP53-209ENST00000514665 INAFM1C9JVW0 142 aa9.27□□□□□ -0.92
USP53-209ENST00000514665 PRB2P02812 416 aaPredicted RBP9.27□□□□□ -0.92
USP53-209ENST00000514665 KRTAP10-9P60411 292 aa9.27□□□□□ -0.92
USP53-209ENST00000514665 SDIM1Q6ZPB5 146 aa9.27□□□□□ -0.93
USP53-209ENST00000514665 ZNF843Q8N446 348 aa9.27□□□□□ -0.93
USP53-209ENST00000514665 TRAV23DV6A0A075B6W5 121 aa9.26□□□□□ -0.93
USP53-209ENST00000514665 IBA57-AS1B1ANH7 110 aa9.26□□□□□ -0.93
USP53-209ENST00000514665 SVIPQ8NHG7 77 aa9.26□□□□□ -0.93
USP53-209ENST00000514665 CLUHP3Q96NS8 147 aa9.26□□□□□ -0.93
USP53-209ENST00000514665 ODF3L2Q3SX64 289 aa9.25□□□□□ -0.93
USP53-209ENST00000514665 FAM110AQ9BQ89 295 aa9.25□□□□□ -0.93
USP53-209ENST00000514665 C6orf99Q4VX62 202 aa9.25□□□□□ -0.93
USP53-209ENST00000514665 UFSP1Q6NVU6 142 aa9.25□□□□□ -0.93
USP53-209ENST00000514665 COX8CQ7Z4L0 72 aa9.25□□□□□ -0.93
USP53-209ENST00000514665 ZNF580Q9UK33 172 aa9.25□□□□□ -0.93
USP53-209ENST00000514665 TSPEAR-AS2P59090 65 aa9.25□□□□□ -0.93
USP53-209ENST00000514665 COX7BP24311 80 aa9.24□□□□□ -0.93
USP53-209ENST00000514665 CRIP2P52943 208 aaPredicted RBP9.24□□□□□ -0.93
USP53-209ENST00000514665 XGP55808 180 aa9.24□□□□□ -0.93
USP53-209ENST00000514665 MRPS36P82909 103 aaKnown RBP9.24□□□□□ -0.93
USP53-209ENST00000514665 LYRM9A8MSI8 78 aa9.23□□□□□ -0.93
USP53-209ENST00000514665 UBE2D1P51668 147 aa9.23□□□□□ -0.93
USP53-209ENST00000514665 SMIM9A6NGZ8 99 aa9.23□□□□□ -0.93
USP53-209ENST00000514665 HECTD1Q9ULT8 2610 aa9.23□□□□□ -0.93
USP53-209ENST00000514665 IGKV2-24A0A0C4DH68 120 aa9.23□□□□□ -0.93
USP53-209ENST00000514665 IGLV4-69A0A075B6H9 119 aa9.23□□□□□ -0.93
USP53-209ENST00000514665 IGLV2-18A0A075B6J9 118 aa9.22□□□□□ -0.93
USP53-209ENST00000514665 LST1O00453 97 aa9.22□□□□□ -0.93
USP53-209ENST00000514665 LINC00242Q5T6M2 205 aa9.22□□□□□ -0.93
USP53-209ENST00000514665 ATRQ13535 2644 aa9.22□□□□□ -0.93
USP53-209ENST00000514665 C11orf45Q8TAV5 145 aa9.21□□□□□ -0.93
USP53-209ENST00000514665 FRYLO94915 3013 aa9.21□□□□□ -0.93
USP53-209ENST00000514665 H7C423 109 aa9.21□□□□□ -0.94
USP53-209ENST00000514665 NDUFS5O43920 106 aa9.21□□□□□ -0.94
USP53-209ENST00000514665 TIMM17BO60830 172 aa9.21□□□□□ -0.94
USP53-209ENST00000514665 SCXQ7RTU7 201 aa9.21□□□□□ -0.94
USP53-209ENST00000514665 MGAM2Q2M2H8 2515 aa9.2□□□□□ -0.94
USP53-209ENST00000514665 CDC42SE2Q9NRR3 84 aa9.2□□□□□ -0.94
USP53-209ENST00000514665 C20orf197Q8N268 126 aa9.2□□□□□ -0.94
USP53-209ENST00000514665 LINC00959A0A1B0GUT2 108 aa9.2□□□□□ -0.94
USP53-209ENST00000514665 UBE2D3P61077 147 aa9.19□□□□□ -0.94
USP53-209ENST00000514665 UBE2D2P62837 147 aa9.19□□□□□ -0.94
USP53-209ENST00000514665 DEFB131BA0A096LNP1 70 aa9.18□□□□□ -0.94
USP53-209ENST00000514665 LINC00694P0DN24 101 aa9.18□□□□□ -0.94
USP53-209ENST00000514665 HIGD2AQ9BW72 106 aa9.18□□□□□ -0.94
USP53-209ENST00000514665 UPK3BQ9BT76 320 aa9.18□□□□□ -0.94
USP53-209ENST00000514665 SMIM11BQ8TCY0 68 aa9.18□□□□□ -0.94
USP53-209ENST00000514665 ADAMTSL4-AS1Q5T5F5 129 aa9.17□□□□□ -0.94
USP53-209ENST00000514665 A0A096LNI7 61 aa9.17□□□□□ -0.94
USP53-209ENST00000514665 SPATA25Q9BR10 227 aa9.17□□□□□ -0.94
USP53-209ENST00000514665 TMEM258P61165 79 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 ENHOQ6UWT2 76 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 SMR3AQ99954 134 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 PDE6GP18545 87 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 CD164L2Q6UWJ8 174 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 Q6ZQY7 126 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 C1orf158Q8N1D5 194 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 MAST4O15021 2626 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 J3KT08 172 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 MIFP14174 115 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 UBE2AP49459 152 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 Q6ZSN1 163 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 SMIM1B2RUZ4 78 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 LY6G6DO95868 133 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 COX6A2Q02221 97 aa9.16□□□□□ -0.94
USP53-209ENST00000514665 H3BQ85 93 aa9.15□□□□□ -0.94
USP53-209ENST00000514665 CHCHD7Q9BUK0 85 aa9.15□□□□□ -0.94
USP53-209ENST00000514665 BPY2O14599 106 aa9.15□□□□□ -0.94
USP53-209ENST00000514665 UQCRQO14949 82 aa9.14□□□□□ -0.95
USP53-209ENST00000514665 HILS1P60008 231 aa9.14□□□□□ -0.95
USP53-209ENST00000514665 MAP1AP78559 2803 aaPredicted RBP9.13□□□□□ -0.95
USP53-209ENST00000514665 IGLV4-60A0A075B6I1 120 aa9.13□□□□□ -0.95
USP53-209ENST00000514665 IGKV2-28A0A075B6P5 120 aa9.12□□□□□ -0.95
USP53-209ENST00000514665 IGKV2D-28P01615 120 aa9.12□□□□□ -0.95
USP53-209ENST00000514665 KIF25-AS1Q9Y6Z4 181 aa9.12□□□□□ -0.95
USP53-209ENST00000514665 SYCNQ0VAF6 134 aa9.12□□□□□ -0.95
USP53-209ENST00000514665 KPRPQ5T749 579 aaPredicted RBP9.12□□□□□ -0.95
USP53-209ENST00000514665 MP68P56378 58 aa9.11□□□□□ -0.95
USP53-209ENST00000514665 AMELXQ99217 191 aa9.11□□□□□ -0.95
USP53-209ENST00000514665 C9orf116Q5BN46 136 aaPredicted RBP9.11□□□□□ -0.95
USP53-209ENST00000514665 NDUFB1O75438 58 aa9.11□□□□□ -0.95
USP53-209ENST00000514665 PRR3P79522 188 aaKnown RBP9.11□□□□□ -0.95
USP53-209ENST00000514665 CCKP06307 115 aa9.1□□□□□ -0.95
USP53-209ENST00000514665 PLA2G2AP14555 144 aa9.1□□□□□ -0.95
USP53-209ENST00000514665 WFDC9Q8NEX5 89 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms