RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 DEFB123Q8N688 67 aa-0.26□□□□□ -2.45
HMGCS1-207ENST00000514610 WNK1Q9H4A3 2382 aa-0.26□□□□□ -2.45
HMGCS1-207ENST00000514610 SMG6Q86US8 1419 aaKnown RBP-0.27□□□□□ -2.45
HMGCS1-207ENST00000514610 SNAPC5O75971 98 aa-0.27□□□□□ -2.45
HMGCS1-207ENST00000514610 PRM1P04553 51 aa-0.27□□□□□ -2.45
HMGCS1-207ENST00000514610 COX6B1P14854 86 aa-0.27□□□□□ -2.45
HMGCS1-207ENST00000514610 RPL13AP3Q6NVV1 102 aa-0.27□□□□□ -2.45
HMGCS1-207ENST00000514610 MYOZ3Q8TDC0 251 aa-0.27□□□□□ -2.45
HMGCS1-207ENST00000514610 STAB1Q9NY15 2570 aa-0.27□□□□□ -2.45
HMGCS1-207ENST00000514610 CHKB-CPT1BH3BT56 60 aa-0.28□□□□□ -2.45
HMGCS1-207ENST00000514610 SFT2D2O95562 160 aa-0.28□□□□□ -2.45
HMGCS1-207ENST00000514610 MGPP08493 103 aa-0.28□□□□□ -2.45
HMGCS1-207ENST00000514610 WHAMMP3Q1A5X7 153 aa-0.28□□□□□ -2.45
HMGCS1-207ENST00000514610 TMEM263Q8WUH6 116 aaKnown RBP-0.28□□□□□ -2.45
HMGCS1-207ENST00000514610 SPRR4Q96PI1 79 aa-0.28□□□□□ -2.45
HMGCS1-207ENST00000514610 URB1O60287 2271 aaKnown RBP-0.28□□□□□ -2.45
HMGCS1-207ENST00000514610 TOP2BQ02880 1626 aa-0.28□□□□□ -2.45
HMGCS1-207ENST00000514610 MUC2Q02817 5179 aa-0.28□□□□□ -2.45
HMGCS1-207ENST00000514610 WDR7Q9Y4E6 1490 aa-0.29□□□□□ -2.46
HMGCS1-207ENST00000514610 EFCAB10A6NFE3 127 aa-0.29□□□□□ -2.46
HMGCS1-207ENST00000514610 SPRR2BP35325 72 aa-0.29□□□□□ -2.46
HMGCS1-207ENST00000514610 ATP5EP56381 51 aaPredicted RBP-0.29□□□□□ -2.46
HMGCS1-207ENST00000514610 CDC42SE2Q9NRR3 84 aa-0.29□□□□□ -2.46
HMGCS1-207ENST00000514610 EIF4G3O43432 1585 aaKnown RBP-0.29□□□□□ -2.46
HMGCS1-207ENST00000514610 LRP1BQ9NZR2 4599 aa-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 NUP188Q5SRE5 1749 aa-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 CC2D2AQ9P2K1 1620 aa-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 UBE2L5PA0A1B0GUS4 154 aa-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 A0A1B0GV90 55 aa-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 UBE2L3P68036 154 aaKnown RBP-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 FAM167A-AS1Q96KT0 104 aa-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 NXT2Q9NPJ8 142 aaKnown RBP-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 UQCR10Q9UDW1 63 aa-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 IER3IP1Q9Y5U9 82 aa-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 HECTD4Q9Y4D8 3996 aa-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 GAPVD1Q14C86 1478 aa-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 NSD3Q9BZ95 1437 aa-0.3□□□□□ -2.46
HMGCS1-207ENST00000514610 TULP4Q9NRJ4 1543 aa-0.31□□□□□ -2.46
HMGCS1-207ENST00000514610 F6UZH7 168 aa-0.31□□□□□ -2.46
HMGCS1-207ENST00000514610 K7EQZ3 153 aa-0.31□□□□□ -2.46
HMGCS1-207ENST00000514610 SPRR1BP22528 89 aa-0.31□□□□□ -2.46
HMGCS1-207ENST00000514610 NRKQ7Z2Y5 1582 aa-0.32□□□□□ -2.46
HMGCS1-207ENST00000514610 POLA1P09884 1462 aaPredicted RBP-0.32□□□□□ -2.46
HMGCS1-207ENST00000514610 TRBV7-4A0A0J9YYF1 115 aa-0.32□□□□□ -2.46
HMGCS1-207ENST00000514610 SPINK4O60575 86 aa-0.32□□□□□ -2.46
HMGCS1-207ENST00000514610 IGLC1P0CG04 106 aa-0.32□□□□□ -2.46
HMGCS1-207ENST00000514610 DPH3P1Q9H4G8 78 aa-0.32□□□□□ -2.46
HMGCS1-207ENST00000514610 FAIMQ9NVQ4 179 aa-0.32□□□□□ -2.46
HMGCS1-207ENST00000514610 TENM2Q9NT68 2774 aa-0.32□□□□□ -2.46
HMGCS1-207ENST00000514610 HMGXB3Q12766 1538 aa-0.33□□□□□ -2.46
HMGCS1-207ENST00000514610 EHBP1L1Q8N3D4 1523 aa-0.33□□□□□ -2.46
HMGCS1-207ENST00000514610 MAGI1Q96QZ7 1491 aaPredicted RBP-0.33□□□□□ -2.46
HMGCS1-207ENST00000514610 MRC2Q9UBG0 1479 aa-0.33□□□□□ -2.46
HMGCS1-207ENST00000514610 FAM24AA6NFZ4 105 aa-0.33□□□□□ -2.46
HMGCS1-207ENST00000514610 H3BQ15 152 aa-0.33□□□□□ -2.46
HMGCS1-207ENST00000514610 C10orf113Q5VZT2 155 aa-0.33□□□□□ -2.46
HMGCS1-207ENST00000514610 FAM223AQ8IWN6 122 aa-0.33□□□□□ -2.46
HMGCS1-207ENST00000514610 DIP2CQ9Y2E4 1556 aa-0.33□□□□□ -2.46
HMGCS1-207ENST00000514610 CHD1O14646 1710 aa-0.33□□□□□ -2.46
HMGCS1-207ENST00000514610 APC2O95996 2303 aa-0.33□□□□□ -2.46
HMGCS1-207ENST00000514610 DLEU1O43261 78 aa-0.34□□□□□ -2.46
HMGCS1-207ENST00000514610 COX6CP09669 75 aa-0.34□□□□□ -2.46
HMGCS1-207ENST00000514610 UBE2D3P61077 147 aa-0.34□□□□□ -2.46
HMGCS1-207ENST00000514610 GNG11P61952 73 aa-0.34□□□□□ -2.46
HMGCS1-207ENST00000514610 UBE2D2P62837 147 aa-0.34□□□□□ -2.46
HMGCS1-207ENST00000514610 PDCD11Q14690 1871 aaKnown RBP-0.34□□□□□ -2.46
HMGCS1-207ENST00000514610 SCAPERQ9BY12 1400 aa-0.34□□□□□ -2.46
HMGCS1-207ENST00000514610 ABCA3Q99758 1704 aa-0.35□□□□□ -2.47
HMGCS1-207ENST00000514610 COL6A3P12111 3177 aa-0.35□□□□□ -2.47
HMGCS1-207ENST00000514610 GNG4P50150 75 aa-0.35□□□□□ -2.47
HMGCS1-207ENST00000514610 PRO1933Q9H354 126 aa-0.35□□□□□ -2.47
HMGCS1-207ENST00000514610 LINC00846Q9NV44 126 aa-0.35□□□□□ -2.47
HMGCS1-207ENST00000514610 ARL2-SNX15V9GYD0 113 aa-0.35□□□□□ -2.47
HMGCS1-207ENST00000514610 PKHD1P08F94 4074 aa-0.35□□□□□ -2.47
HMGCS1-207ENST00000514610 MAPKBP1O60336 1514 aa-0.35□□□□□ -2.47
HMGCS1-207ENST00000514610 CHD8Q9HCK8 2581 aa-0.35□□□□□ -2.47
HMGCS1-207ENST00000514610 SETXQ7Z333 2677 aaKnown RBP-0.35□□□□□ -2.47
HMGCS1-207ENST00000514610 SPHKAPQ2M3C7 1700 aa-0.35□□□□□ -2.47
HMGCS1-207ENST00000514610 DNAJC13O75165 2243 aa-0.36□□□□□ -2.47
HMGCS1-207ENST00000514610 SETBP1Q9Y6X0 1596 aa-0.36□□□□□ -2.47
HMGCS1-207ENST00000514610 EP300Q09472 2414 aaPredicted RBP-0.36□□□□□ -2.47
HMGCS1-207ENST00000514610 NAP1L6A6NFF2 107 aa-0.36□□□□□ -2.47
HMGCS1-207ENST00000514610 UBA52P62987 128 aaKnown RBP-0.36□□□□□ -2.47
HMGCS1-207ENST00000514610 USMG5Q96IX5 58 aa-0.36□□□□□ -2.47
HMGCS1-207ENST00000514610 MANBALQ9NQG1 85 aa-0.36□□□□□ -2.47
HMGCS1-207ENST00000514610 PRO1854Q9UHT4 67 aa-0.36□□□□□ -2.47
HMGCS1-207ENST00000514610 TOPAZ1Q8N9V7 1692 aa-0.37□□□□□ -2.47
HMGCS1-207ENST00000514610 LINC00959A0A1B0GUT2 108 aa-0.37□□□□□ -2.47
HMGCS1-207ENST00000514610 CORTO00230 105 aa-0.37□□□□□ -2.47
HMGCS1-207ENST00000514610 SAA2P0DJI9 122 aaPredicted RBP-0.37□□□□□ -2.47
HMGCS1-207ENST00000514610 COX8AP10176 69 aa-0.37□□□□□ -2.47
HMGCS1-207ENST00000514610 Q0VG73 95 aa-0.37□□□□□ -2.47
HMGCS1-207ENST00000514610 SFTA2Q6UW10 78 aa-0.37□□□□□ -2.47
HMGCS1-207ENST00000514610 SVBPQ8N300 66 aa-0.37□□□□□ -2.47
HMGCS1-207ENST00000514610 PDZD2O15018 2839 aa-0.37□□□□□ -2.47
HMGCS1-207ENST00000514610 ADGRL2O95490 1459 aa-0.37□□□□□ -2.47
HMGCS1-207ENST00000514610 SRRM2Q9UQ35 2752 aaKnown RBP-0.37□□□□□ -2.47
HMGCS1-207ENST00000514610 A0A1B0GWA3 101 aa-0.38□□□□□ -2.47
HMGCS1-207ENST00000514610 PPP3R1P63098 170 aa-0.38□□□□□ -2.47
HMGCS1-207ENST00000514610 TMEM203Q969S6 136 aa-0.38□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms