RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 AEBP2Q6ZN18 517 aaPredicted RBP25.39■■□□□ 1.66
HMGCS1-207ENST00000514610 CHIC1Q5VXU3 224 aa24.71■■□□□ 1.55
HMGCS1-207ENST00000514610 PHF23Q9BUL5 403 aaPredicted RBP21.83■■□□□ 1.09
HMGCS1-207ENST00000514610 SENP3Q9H4L4 574 aaPredicted RBP21.61■■□□□ 1.05
HMGCS1-207ENST00000514610 FOXD1Q16676 465 aa20.18■□□□□ 0.82
HMGCS1-207ENST00000514610 PLPPR3Q6T4P5 718 aa20.15■□□□□ 0.82
HMGCS1-207ENST00000514610 PPP6R1Q9UPN7 881 aa19.16■□□□□ 0.66
HMGCS1-207ENST00000514610 ADRA2BP18089 450 aa19.14■□□□□ 0.65
HMGCS1-207ENST00000514610 MSH5O43196 834 aa18.87■□□□□ 0.61
HMGCS1-207ENST00000514610 PIAS4Q8N2W9 510 aaPredicted RBP18.83■□□□□ 0.6
HMGCS1-207ENST00000514610 POTEDQ86YR6 584 aa18.54■□□□□ 0.56
HMGCS1-207ENST00000514610 PPP4R3CPQ6ZMV5 832 aa17.84■□□□□ 0.45
HMGCS1-207ENST00000514610 KCNA4P22459 653 aa17.83■□□□□ 0.44
HMGCS1-207ENST00000514610 NCBP3Q53F19 620 aaKnown RBP17.38■□□□□ 0.37
HMGCS1-207ENST00000514610 SCAF1Q9H7N4 1312 aaKnown RBP17.37■□□□□ 0.37
HMGCS1-207ENST00000514610 MAPK8IP2Q13387 824 aaPredicted RBP17.28■□□□□ 0.36
HMGCS1-207ENST00000514610 CNKSR2Q8WXI2 1034 aa17.24■□□□□ 0.35
HMGCS1-207ENST00000514610 NPM3O75607 178 aaKnown RBP17.23■□□□□ 0.35
HMGCS1-207ENST00000514610 DMRT2Q9Y5R5 561 aa17.14■□□□□ 0.33
HMGCS1-207ENST00000514610 SLC4A1APQ9BWU0 796 aaKnown RBP16.99■□□□□ 0.31
HMGCS1-207ENST00000514610 EHMT2Q96KQ7 1210 aa16.9■□□□□ 0.3
HMGCS1-207ENST00000514610 RNF216Q9NWF9 866 aaPredicted RBP16.83■□□□□ 0.28
HMGCS1-207ENST00000514610 HOXD11P31277 338 aaPredicted RBP16.7■□□□□ 0.26
HMGCS1-207ENST00000514610 DNAJC5BQ9UF47 199 aa16.65■□□□□ 0.26
HMGCS1-207ENST00000514610 CSRNP3Q8WYN3 585 aa16.58■□□□□ 0.24
HMGCS1-207ENST00000514610 ZBTB22O15209 634 aa16.46■□□□□ 0.23
HMGCS1-207ENST00000514610 DCAF8L1A6NGE4 600 aa16.42■□□□□ 0.22
HMGCS1-207ENST00000514610 FOXD4L1Q9NU39 408 aa16.26■□□□□ 0.19
HMGCS1-207ENST00000514610 SLC4A2P04920 1241 aa16.23■□□□□ 0.19
HMGCS1-207ENST00000514610 CACNB1Q02641 598 aaPredicted RBP16.22■□□□□ 0.19
HMGCS1-207ENST00000514610 RNF39Q9H2S5 420 aa16.12■□□□□ 0.17
HMGCS1-207ENST00000514610 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.87■□□□□ 0.13
HMGCS1-207ENST00000514610 MYCNP04198 464 aaPredicted RBP15.86■□□□□ 0.13
HMGCS1-207ENST00000514610 C1QBPQ07021 282 aaKnown RBP15.85■□□□□ 0.13
HMGCS1-207ENST00000514610 U3KPZ7 1027 aaPredicted RBP15.73■□□□□ 0.11
HMGCS1-207ENST00000514610 ATXN8OSP0DMR3 200 aa15.63■□□□□ 0.09
HMGCS1-207ENST00000514610 ATF5Q9Y2D1 282 aaPredicted RBP15.51■□□□□ 0.07
HMGCS1-207ENST00000514610 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.5■□□□□ 0.07
HMGCS1-207ENST00000514610 HNRNPUL2Q1KMD3 747 aaKnown RBP15.5■□□□□ 0.07
HMGCS1-207ENST00000514610 SAMD1Q6SPF0 538 aaPredicted RBP15.49■□□□□ 0.07
HMGCS1-207ENST00000514610 APLP2Q06481 763 aa15.24■□□□□ 0.03
HMGCS1-207ENST00000514610 SPINK5Q9NQ38 1064 aaPredicted RBP15.2■□□□□ 0.02
HMGCS1-207ENST00000514610 ZNF219Q9P2Y4 722 aaPredicted RBP15.16■□□□□ 0.02
HMGCS1-207ENST00000514610 CAPN15O75808 1086 aa15.14■□□□□ 0.01
HMGCS1-207ENST00000514610 DSG3P32926 999 aa15.08■□□□□ 0
HMGCS1-207ENST00000514610 TRHP20396 242 aaPredicted RBP15.07■□□□□ 0
HMGCS1-207ENST00000514610 FKBP8Q14318 412 aa14.93□□□□□ -0.02
HMGCS1-207ENST00000514610 POLA2Q14181 598 aa14.91□□□□□ -0.02
HMGCS1-207ENST00000514610 ABCB7O75027 752 aa14.85□□□□□ -0.03
HMGCS1-207ENST00000514610 MKRN4PQ13434 485 aaPredicted RBP14.85□□□□□ -0.03
HMGCS1-207ENST00000514610 FBLN2P98095 1184 aa14.7□□□□□ -0.06
HMGCS1-207ENST00000514610 ZBTB12Q9Y330 459 aaPredicted RBP14.61□□□□□ -0.07
HMGCS1-207ENST00000514610 SPDYE4A6NLX3 237 aa14.59□□□□□ -0.07
HMGCS1-207ENST00000514610 POTEHQ6S545 545 aa14.5□□□□□ -0.09
HMGCS1-207ENST00000514610 PROM2Q8N271 834 aa14.45□□□□□ -0.1
HMGCS1-207ENST00000514610 OSCARQ8IYS5 282 aa14.42□□□□□ -0.1
HMGCS1-207ENST00000514610 RBM42Q9BTD8 480 aaKnown RBP14.35□□□□□ -0.11
HMGCS1-207ENST00000514610 SPDYE2BA6NHP3 402 aa14.29□□□□□ -0.12
HMGCS1-207ENST00000514610 SPDYE6P0CI01 402 aa14.29□□□□□ -0.12
HMGCS1-207ENST00000514610 SPDYE2Q495Y8 402 aa14.29□□□□□ -0.12
HMGCS1-207ENST00000514610 ZNF692Q9BU19 519 aaPredicted RBP14.28□□□□□ -0.12
HMGCS1-207ENST00000514610 SSUH2Q9Y2M2 353 aa14.26□□□□□ -0.13
HMGCS1-207ENST00000514610 FBXO3Q9UK99 471 aa14.23□□□□□ -0.13
HMGCS1-207ENST00000514610 RTN4Q9NQC3 1192 aaKnown RBP14.19□□□□□ -0.14
HMGCS1-207ENST00000514610 PABPN1Q86U42 306 aaKnown RBP eCLIP14.13□□□□□ -0.15
HMGCS1-207ENST00000514610 AMER1Q5JTC6 1135 aaPredicted RBP14.12□□□□□ -0.15
HMGCS1-207ENST00000514610 VASPP50552 380 aaPredicted RBP14.11□□□□□ -0.15
HMGCS1-207ENST00000514610 CHRDL2Q6WN34 429 aa14.08□□□□□ -0.16
HMGCS1-207ENST00000514610 AKT1S1Q96B36 256 aa14.02□□□□□ -0.17
HMGCS1-207ENST00000514610 IFNLR1Q8IU57 520 aaPredicted RBP13.97□□□□□ -0.17
HMGCS1-207ENST00000514610 STAG3Q9UJ98 1225 aa13.93□□□□□ -0.18
HMGCS1-207ENST00000514610 REM2Q8IYK8 340 aaPredicted RBP13.9□□□□□ -0.18
HMGCS1-207ENST00000514610 PLCD3Q8N3E9 789 aa13.79□□□□□ -0.2
HMGCS1-207ENST00000514610 PITPNM1O00562 1244 aa13.78□□□□□ -0.2
HMGCS1-207ENST00000514610 MIER1Q8N108 512 aa13.78□□□□□ -0.2
HMGCS1-207ENST00000514610 SPDYE1Q8NFV5 336 aaPredicted RBP13.78□□□□□ -0.2
HMGCS1-207ENST00000514610 PIP4P2Q8N4L2 257 aa13.75□□□□□ -0.21
HMGCS1-207ENST00000514610 KLHL34Q8N239 644 aa13.74□□□□□ -0.21
HMGCS1-207ENST00000514610 CLEC11AQ9Y240 323 aa13.71□□□□□ -0.21
HMGCS1-207ENST00000514610 SPOCK2Q92563 424 aa13.7□□□□□ -0.22
HMGCS1-207ENST00000514610 FXR2P51116 673 aaKnown RBP eCLIP13.66□□□□□ -0.223e-11■■■□□ 16.2
HMGCS1-207ENST00000514610 PKD2Q13563 968 aa13.64□□□□□ -0.23
HMGCS1-207ENST00000514610 PRR29P0C7W0 189 aa13.62□□□□□ -0.23
HMGCS1-207ENST00000514610 PLEKHG5O94827 1062 aa13.59□□□□□ -0.23
HMGCS1-207ENST00000514610 CREBZFQ9NS37 354 aa13.59□□□□□ -0.23
HMGCS1-207ENST00000514610 SP7Q8TDD2 431 aaPredicted RBP13.57□□□□□ -0.24
HMGCS1-207ENST00000514610 ZBTB47Q9UFB7 747 aaPredicted RBP13.55□□□□□ -0.24
HMGCS1-207ENST00000514610 MNX1P50219 401 aaPredicted RBP13.51□□□□□ -0.25
HMGCS1-207ENST00000514610 HAX1O00165 279 aa13.48□□□□□ -0.25
HMGCS1-207ENST00000514610 NUBP1P53384 320 aa13.46□□□□□ -0.25
HMGCS1-207ENST00000514610 ECM2O94769 699 aaPredicted RBP13.43□□□□□ -0.26
HMGCS1-207ENST00000514610 CIZ1Q9ULV3 898 aaPredicted RBP13.42□□□□□ -0.26
HMGCS1-207ENST00000514610 CHADLQ6NUI6 762 aa13.41□□□□□ -0.26
HMGCS1-207ENST00000514610 PRKAR2AP13861 404 aaKnown RBP13.4□□□□□ -0.26
HMGCS1-207ENST00000514610 EVX2Q03828 476 aa13.36□□□□□ -0.27
HMGCS1-207ENST00000514610 RGL2O15211 777 aa13.35□□□□□ -0.27
HMGCS1-207ENST00000514610 DCAF8L2P0C7V8 631 aa13.35□□□□□ -0.27
HMGCS1-207ENST00000514610 RASEFQ8IZ41 740 aa13.34□□□□□ -0.27
HMGCS1-207ENST00000514610 GSE1Q14687 1217 aa13.31□□□□□ -0.28
HMGCS1-207ENST00000514610 DCAF8Q5TAQ9 597 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms