RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 COX6A2Q02221 97 aa5.79□□□□□ -1.48
RNF4-220ENST00000513578 LELP1Q5T871 98 aa5.79□□□□□ -1.48
RNF4-220ENST00000513578 ZFAND6Q6FIF0 208 aa5.79□□□□□ -1.48
RNF4-220ENST00000513578 LINC01561Q8N1V8 128 aa5.79□□□□□ -1.48
RNF4-220ENST00000513578 COX11Q9Y6N1 276 aa5.79□□□□□ -1.48
RNF4-220ENST00000513578 IGLV4-60A0A075B6I1 120 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 A0A096LPF7 62 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 A0A1B0GWB2 263 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 K7EIL1 84 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 TIMM17BO60830 172 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 GCSHP23434 173 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 FXYD2P54710 66 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 RBX1P62877 108 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 SCGB1D4Q6XE38 83 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 Q6ZVH6 145 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 HIST1H4GQ99525 98 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 RETNQ9HD89 108 aa5.78□□□□□ -1.48
RNF4-220ENST00000513578 TRAV8-3A0A0A6YYJ7 113 aa5.77□□□□□ -1.49
RNF4-220ENST00000513578 TRAV13-1A0A0B4J241 112 aa5.77□□□□□ -1.49
RNF4-220ENST00000513578 A0A0J9YXY3 114 aa5.77□□□□□ -1.49
RNF4-220ENST00000513578 SMIM1B2RUZ4 78 aa5.77□□□□□ -1.49
RNF4-220ENST00000513578 NDUFA1O15239 70 aa5.77□□□□□ -1.49
RNF4-220ENST00000513578 SPINK8P0C7L1 97 aa5.77□□□□□ -1.49
RNF4-220ENST00000513578 SMIM13P0DJ93 91 aa5.77□□□□□ -1.49
RNF4-220ENST00000513578 C10orf126Q8N4M7 172 aa5.77□□□□□ -1.49
RNF4-220ENST00000513578 IGHV3OR16-9A0A0B4J2B5 98 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 LINC00959A0A1B0GUT2 108 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 TMEM238LA0A1B0GVL6 79 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 C9orf118A6NHY6 69 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 TMEM238C9JI98 176 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 IGHV3-30P01768 117 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 IGHV3-30-5P0DP03 117 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 PTTG1IPP53801 180 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 C11orf45Q8TAV5 145 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 SPANXDQ9BXN6 97 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 PPDPFQ9H3Y8 114 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 SPANXCQ9NY87 97 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 NDUFA12Q9UI09 145 aa5.76□□□□□ -1.49
RNF4-220ENST00000513578 MGAM2Q2M2H8 2515 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 IGHV3-64A0A075B6Q5 118 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 A0A087WZ39 114 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 A0A0J9YWU9 116 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 TMEM262E9PQX1 116 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 HTN3P15516 51 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 HERV-K104P63124 156 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 SRSF9Q13242 221 aaKnown RBP eCLIP5.75□□□□□ -1.49
RNF4-220ENST00000513578 SS18Q15532 418 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 LYPD5Q6UWN5 251 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 Q6ZTC4 211 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 LITAFQ99732 161 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 PGPEP1Q9NXJ5 209 aa5.75□□□□□ -1.49
RNF4-220ENST00000513578 SFTA2Q6UW10 78 aa5.74□□□□□ -1.49
RNF4-220ENST00000513578 ZNF625Q96I27 306 aaPredicted RBP5.74□□□□□ -1.49
RNF4-220ENST00000513578 K7EP13 123 aa5.73□□□□□ -1.49
RNF4-220ENST00000513578 IFITM1P13164 125 aa5.73□□□□□ -1.49
RNF4-220ENST00000513578 PRR34Q9NV39 138 aa5.73□□□□□ -1.49
RNF4-220ENST00000513578 NHP2Q9NX24 153 aaKnown RBP5.73□□□□□ -1.49
RNF4-220ENST00000513578 DEFB131BA0A096LNP1 70 aa5.72□□□□□ -1.49
RNF4-220ENST00000513578 TRAV10A0A0B4J240 114 aa5.72□□□□□ -1.49
RNF4-220ENST00000513578 NANOS2P60321 138 aaKnown RBP5.72□□□□□ -1.49
RNF4-220ENST00000513578 RPL24P83731 157 aaKnown RBP5.72□□□□□ -1.49
RNF4-220ENST00000513578 REG3AQ06141 175 aa5.72□□□□□ -1.49
RNF4-220ENST00000513578 UBE2V1Q13404 147 aa5.72□□□□□ -1.49
RNF4-220ENST00000513578 CIRBPQ14011 172 aaKnown RBP5.72□□□□□ -1.49
RNF4-220ENST00000513578 MIAQ16674 131 aa5.72□□□□□ -1.49
RNF4-220ENST00000513578 CD164L2Q6UWJ8 174 aa5.72□□□□□ -1.49
RNF4-220ENST00000513578 COX7B2Q8TF08 81 aa5.72□□□□□ -1.49
RNF4-220ENST00000513578 HUWE1Q7Z6Z7 4374 aaKnown RBP5.71□□□□□ -1.5
RNF4-220ENST00000513578 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.71□□□□□ -1.5
RNF4-220ENST00000513578 A0A0B4J2C4 111 aa5.71□□□□□ -1.5
RNF4-220ENST00000513578 DEFB121Q5J5C9 76 aa5.71□□□□□ -1.5
RNF4-220ENST00000513578 LINC00269Q8N2A0 174 aa5.71□□□□□ -1.5
RNF4-220ENST00000513578 C15orf53Q8NAA6 179 aa5.71□□□□□ -1.5
RNF4-220ENST00000513578 COPS9Q8WXC6 57 aa5.71□□□□□ -1.5
RNF4-220ENST00000513578 Q9H8V8 135 aa5.71□□□□□ -1.5
RNF4-220ENST00000513578 TRAV8-4A0A0B4J246 113 aa5.7□□□□□ -1.5
RNF4-220ENST00000513578 A0A1W2PPM0 123 aa5.7□□□□□ -1.5
RNF4-220ENST00000513578 IGLL5B9A064 214 aa5.7□□□□□ -1.5
RNF4-220ENST00000513578 PRB2P02812 416 aaPredicted RBP5.7□□□□□ -1.5
RNF4-220ENST00000513578 ANGP03950 147 aaKnown RBP5.7□□□□□ -1.5
RNF4-220ENST00000513578 VAMP3Q15836 100 aa5.7□□□□□ -1.5
RNF4-220ENST00000513578 ADAMTSL4-AS1Q5T5F5 129 aa5.7□□□□□ -1.5
RNF4-220ENST00000513578 MUSTN1Q8IVN3 82 aa5.7□□□□□ -1.5
RNF4-220ENST00000513578 Q8IZM0 81 aa5.7□□□□□ -1.5
RNF4-220ENST00000513578 PCLOQ9Y6V0 5065 aa5.69□□□□□ -1.5
RNF4-220ENST00000513578 IGKV3OR2-268A0A0C4DH90 116 aa5.69□□□□□ -1.5
RNF4-220ENST00000513578 A4D1N5 150 aa5.69□□□□□ -1.5
RNF4-220ENST00000513578 H3BUT2 72 aa5.69□□□□□ -1.5
RNF4-220ENST00000513578 K7ERJ3 54 aa5.69□□□□□ -1.5
RNF4-220ENST00000513578 CFC1BP0CG36 223 aa5.69□□□□□ -1.5
RNF4-220ENST00000513578 CFC1P0CG37 223 aa5.69□□□□□ -1.5
RNF4-220ENST00000513578 ESRGQ1W209 222 aa5.69□□□□□ -1.5
RNF4-220ENST00000513578 CHCHD10Q8WYQ3 142 aaPredicted RBP5.69□□□□□ -1.5
RNF4-220ENST00000513578 RAB37Q96AX2 223 aa5.69□□□□□ -1.5
RNF4-220ENST00000513578 B9D2Q9BPU9 175 aa5.69□□□□□ -1.5
RNF4-220ENST00000513578 TENM3Q9P273 2699 aa5.68□□□□□ -1.5
RNF4-220ENST00000513578 IBA57-AS1B1ANH7 110 aa5.68□□□□□ -1.5
RNF4-220ENST00000513578 K7EP34 96 aa5.68□□□□□ -1.5
RNF4-220ENST00000513578 COX7A2LO14548 114 aa5.68□□□□□ -1.5
RNF4-220ENST00000513578 FABP2P12104 132 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms