RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 B3GALT5-AS1P59052 145 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 Q6P435 159 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 FAM223AQ8IWN6 122 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 PTPRDP23468 1912 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 HCG22E2RYF7 251 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 M0R378 163 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 CDK2AP2O75956 126 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 IGKV1-39P01597 117 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 IGKV1D-39P04432 117 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 HCP5Q6MZN7 132 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 C9orf139Q6ZV77 190 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 Q86TA4 180 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 IGKV3-15P01624 115 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 IGLV2-23P01705 113 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 SMR3BP02814 79 aaPredicted RBP3.79□□□□□ -1.8
USP54-216ENST00000498143 PRCDQ00LT1 54 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 PVRIGQ6DKI7 326 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 ZNF575Q86XF7 245 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 POM121L12Q8N7R1 296 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 PROK2Q9HC23 129 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 IGKV1-27A0A075B6S5 117 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 IGHV1-8P0DP01 117 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 Q5XG85 94 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 ZNF497Q6ZNH5 498 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 TRBV30A0A0K0K1B3 111 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 BUB1B-PAK6H3BSN5 160 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 NEXN-AS1Q8NBZ9 246 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 ZNF524Q96C55 264 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 LOC400499M0QZD8 3231 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 IGLV5-45A0A087WSX0 123 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 PDE6HQ13956 83 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 KIAA0087Q14695 138 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 RPL39P5Q59GN2 51 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 LINC00467Q9BRT7 94 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 SPTBN5Q9NRC6 3674 aaKnown RBP3.78□□□□□ -1.8
USP54-216ENST00000498143 A0A1B0GXF2 115 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 DEFB4AO15263 64 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 Q6ZR03 302 aa3.78□□□□□ -1.8
USP54-216ENST00000498143 TNRC6BQ9UPQ9 1833 aaKnown RBP3.78□□□□□ -1.81
USP54-216ENST00000498143 ADGRG4Q8IZF6 3080 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 TRBV7-3A0A075B6L6 115 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 IGKV1-6A0A0C4DH72 117 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 A0A1B0GW54 56 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 SPART-AS1P0CW21 52 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 SPAG11BQ08648 103 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 SUMO4Q6EEV6 95 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 SPAG11AQ6PDA7 123 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 TM2D3Q9BRN9 247 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 NCOA6Q14686 2063 aaPredicted RBP3.77□□□□□ -1.81
USP54-216ENST00000498143 SAA2P0DJI9 122 aaPredicted RBP3.77□□□□□ -1.81
USP54-216ENST00000498143 SLURP1P55000 103 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 SPRNQ5BIV9 151 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 ENHOQ6UWT2 76 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 LYPD1Q8N2G4 141 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 ODF3Q96PU9 254 aa3.77□□□□□ -1.81
USP54-216ENST00000498143 IGHV3-64A0A075B6Q5 118 aa3.76□□□□□ -1.81
USP54-216ENST00000498143 CCL3L1P16619 93 aa3.76□□□□□ -1.81
USP54-216ENST00000498143 KPRPQ5T749 579 aaPredicted RBP3.76□□□□□ -1.81
USP54-216ENST00000498143 C17orf77Q96MU5 243 aa3.76□□□□□ -1.81
USP54-216ENST00000498143 APELAP0DMC3 54 aa3.76□□□□□ -1.81
USP54-216ENST00000498143 ZNF80P51504 273 aaPredicted RBP3.76□□□□□ -1.81
USP54-216ENST00000498143 LINC00205P59089 165 aa3.76□□□□□ -1.81
USP54-216ENST00000498143 C9orf116Q5BN46 136 aaPredicted RBP3.76□□□□□ -1.81
USP54-216ENST00000498143 RNASE13Q5GAN3 156 aaKnown RBP3.76□□□□□ -1.81
USP54-216ENST00000498143 GDF5OSQ5U4N7 250 aa3.76□□□□□ -1.81
USP54-216ENST00000498143 C2orf66Q6UXQ4 117 aa3.76□□□□□ -1.81
USP54-216ENST00000498143 ZNRF1Q8ND25 227 aa3.76□□□□□ -1.81
USP54-216ENST00000498143 DCHS1Q96JQ0 3298 aa3.76□□□□□ -1.81
USP54-216ENST00000498143 MAP6D1Q9H9H5 199 aa3.76□□□□□ -1.81
USP54-216ENST00000498143 KRTAP10-11P60412 298 aa3.76□□□□□ -1.81
USP54-216ENST00000498143 DOCK4Q8N1I0 1966 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 A0A0J9YXV3 536 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 LRCOL1A6NCL2 159 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 SRRM4A7MD48 611 aaKnown RBP3.75□□□□□ -1.81
USP54-216ENST00000498143 UBE2D3P61077 147 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 UBE2D2P62837 147 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 FOXL2NBQ6ZUU3 175 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 XAGE1AQ9HD64 81 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 C14orf132Q9NPU4 83 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 USP34Q70CQ2 3546 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 LINC00473A8K010 186 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 C4orf3Q8WVX3 66 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 HCFC1P51610 2035 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 IGHV3OR16-9A0A0B4J2B5 98 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 LINC01548A6NM66 108 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 PMS2P5A8MQ11 134 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 DEFB104AQ8WTQ1 72 aa3.75□□□□□ -1.81
USP54-216ENST00000498143 IGKV2D-26A0A0A0MRZ7 120 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 DEFB130BP0DP73 79 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 DEFB130AP0DP74 79 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 ZNF22P17026 224 aaPredicted RBP3.74□□□□□ -1.81
USP54-216ENST00000498143 CRIP2P52943 208 aaPredicted RBP3.74□□□□□ -1.81
USP54-216ENST00000498143 EGFEM1PQ0D2K5 195 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 C6orf223Q8N319 242 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 ATP6V0E1O15342 81 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 IGLV1-44P01699 117 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 IGHV3-33P01772 117 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 LEAP2Q969E1 77 aa3.74□□□□□ -1.81
USP54-216ENST00000498143 CAMK2N2Q96S95 79 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms