RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 USP24Q9UPU5 2620 aa11.99□□□□□ -0.49
CCDC88B-209ENST00000494080 KLLNB2CW77 178 aa11.98□□□□□ -0.49
CCDC88B-209ENST00000494080 WFDC10AQ9H1F0 79 aa11.98□□□□□ -0.49
CCDC88B-209ENST00000494080 PKIGQ9Y2B9 76 aa11.98□□□□□ -0.49
CCDC88B-209ENST00000494080 KLK5Q9Y337 293 aaPredicted RBP11.98□□□□□ -0.49
CCDC88B-209ENST00000494080 CELSR3Q9NYQ7 3312 aa11.98□□□□□ -0.49
CCDC88B-209ENST00000494080 COX7CP15954 63 aa11.97□□□□□ -0.49
CCDC88B-209ENST00000494080 ZNF580Q9UK33 172 aa11.96□□□□□ -0.49
CCDC88B-209ENST00000494080 F8WEM9 126 aa11.96□□□□□ -0.49
CCDC88B-209ENST00000494080 JMJD7-PLA2G4BH0Y9G9 81 aa11.96□□□□□ -0.5
CCDC88B-209ENST00000494080 POM121L12Q8N7R1 296 aa11.96□□□□□ -0.5
CCDC88B-209ENST00000494080 FAM240AA0A1B0GVK7 77 aa11.95□□□□□ -0.5
CCDC88B-209ENST00000494080 TIRAPP58753 221 aa11.95□□□□□ -0.5
CCDC88B-209ENST00000494080 NKAPP1Q8N9T2 125 aa11.95□□□□□ -0.5
CCDC88B-209ENST00000494080 NDUFA1O15239 70 aa11.95□□□□□ -0.5
CCDC88B-209ENST00000494080 SLPIP03973 132 aa11.95□□□□□ -0.5
CCDC88B-209ENST00000494080 CRYGDP07320 174 aa11.95□□□□□ -0.5
CCDC88B-209ENST00000494080 FAM19A5Q7Z5A7 132 aaPredicted RBP11.95□□□□□ -0.5
CCDC88B-209ENST00000494080 IGKV2D-24A0A075B6R9 120 aa11.94□□□□□ -0.5
CCDC88B-209ENST00000494080 TRBV10-1A0A0K0K1A3 114 aa11.94□□□□□ -0.5
CCDC88B-209ENST00000494080 LINC00482Q8N8I6 264 aa11.94□□□□□ -0.5
CCDC88B-209ENST00000494080 SMR3AQ99954 134 aa11.94□□□□□ -0.5
CCDC88B-209ENST00000494080 TMEM258P61165 79 aa11.94□□□□□ -0.5
CCDC88B-209ENST00000494080 HRCT1Q6UXD1 115 aa11.94□□□□□ -0.5
CCDC88B-209ENST00000494080 PYGO1Q9Y3Y4 419 aa11.94□□□□□ -0.5
CCDC88B-209ENST00000494080 NCR3O14931 201 aa11.93□□□□□ -0.5
CCDC88B-209ENST00000494080 BRK1Q8WUW1 75 aa11.93□□□□□ -0.5
CCDC88B-209ENST00000494080 MAP1AP78559 2803 aaPredicted RBP11.92□□□□□ -0.5
CCDC88B-209ENST00000494080 USP17L23D6RBM5 183 aa11.92□□□□□ -0.5
CCDC88B-209ENST00000494080 RPL18AQ02543 176 aaKnown RBP11.92□□□□□ -0.5
CCDC88B-209ENST00000494080 PRO0255Q9UI72 69 aa11.92□□□□□ -0.5
CCDC88B-209ENST00000494080 LY6G6DO95868 133 aa11.91□□□□□ -0.5
CCDC88B-209ENST00000494080 SERP2Q8N6R1 65 aa11.91□□□□□ -0.5
CCDC88B-209ENST00000494080 ADAMTSL4-AS1Q5T5F5 129 aa11.91□□□□□ -0.5
CCDC88B-209ENST00000494080 FAM222AQ5U5X8 452 aa11.9□□□□□ -0.5
CCDC88B-209ENST00000494080 CSDC2Q9Y534 153 aaKnown RBP11.9□□□□□ -0.5
CCDC88B-209ENST00000494080 TIMM17BO60830 172 aa11.9□□□□□ -0.5
CCDC88B-209ENST00000494080 MRPS36P82909 103 aaKnown RBP11.9□□□□□ -0.5
CCDC88B-209ENST00000494080 A0A0U1RQV1 116 aa11.89□□□□□ -0.51
CCDC88B-209ENST00000494080 ATRQ13535 2644 aa11.89□□□□□ -0.51
CCDC88B-209ENST00000494080 KLK12Q9UKR0 248 aa11.89□□□□□ -0.51
CCDC88B-209ENST00000494080 UPK3BQ9BT76 320 aa11.88□□□□□ -0.51
CCDC88B-209ENST00000494080 LINC01546A6NGU7 62 aa11.88□□□□□ -0.51
CCDC88B-209ENST00000494080 ENHOQ6UWT2 76 aa11.88□□□□□ -0.51
CCDC88B-209ENST00000494080 TMEM256-PLSCR3K7ERE1 68 aa11.88□□□□□ -0.51
CCDC88B-209ENST00000494080 C9orf85Q96MD7 179 aa11.87□□□□□ -0.51
CCDC88B-209ENST00000494080 DSPP15924 2871 aaKnown RBP11.87□□□□□ -0.51
CCDC88B-209ENST00000494080 PLA2G2AP14555 144 aa11.87□□□□□ -0.51
CCDC88B-209ENST00000494080 FAM236DA0A1B0GTK5 79 aa11.86□□□□□ -0.51
CCDC88B-209ENST00000494080 FAM236CP0DP71 79 aa11.86□□□□□ -0.51
CCDC88B-209ENST00000494080 DEFB105AQ8NG35 78 aa11.86□□□□□ -0.51
CCDC88B-209ENST00000494080 LINC00526Q96FQ7 95 aa11.86□□□□□ -0.51
CCDC88B-209ENST00000494080 ODF3L2Q3SX64 289 aa11.86□□□□□ -0.51
CCDC88B-209ENST00000494080 HILS1P60008 231 aa11.86□□□□□ -0.51
CCDC88B-209ENST00000494080 UBE2D4Q9Y2X8 147 aa11.86□□□□□ -0.51
CCDC88B-209ENST00000494080 CDK2AP2O75956 126 aa11.84□□□□□ -0.51
CCDC88B-209ENST00000494080 CXCL5P42830 114 aa11.84□□□□□ -0.51
CCDC88B-209ENST00000494080 A0A087WVE0 104 aa11.84□□□□□ -0.51
CCDC88B-209ENST00000494080 CAMK2N2Q96S95 79 aa11.83□□□□□ -0.52
CCDC88B-209ENST00000494080 FHL3Q13643 280 aa11.82□□□□□ -0.52
CCDC88B-209ENST00000494080 LOC100131303A0A0U1RQF7 123 aa11.82□□□□□ -0.52
CCDC88B-209ENST00000494080 NDUFC2O95298 119 aa11.81□□□□□ -0.52
CCDC88B-209ENST00000494080 LINC00269Q8N2A0 174 aa11.81□□□□□ -0.52
CCDC88B-209ENST00000494080 MAST4O15021 2626 aa11.8□□□□□ -0.52
CCDC88B-209ENST00000494080 SMIM11BQ8TCY0 68 aa11.8□□□□□ -0.52
CCDC88B-209ENST00000494080 WFDC9Q8NEX5 89 aa11.8□□□□□ -0.52
CCDC88B-209ENST00000494080 UBE2BP63146 152 aa11.79□□□□□ -0.52
CCDC88B-209ENST00000494080 SPAG11BQ08648 103 aa11.79□□□□□ -0.52
CCDC88B-209ENST00000494080 AKAP13Q12802 2813 aa11.79□□□□□ -0.52
CCDC88B-209ENST00000494080 COL6A3P12111 3177 aa11.79□□□□□ -0.52
CCDC88B-209ENST00000494080 PRB2P02812 416 aaPredicted RBP11.79□□□□□ -0.52
CCDC88B-209ENST00000494080 BRI3O95415 125 aa11.79□□□□□ -0.52
CCDC88B-209ENST00000494080 SBSPONQ8IVN8 264 aa11.78□□□□□ -0.52
CCDC88B-209ENST00000494080 MGAM2Q2M2H8 2515 aa11.78□□□□□ -0.52
CCDC88B-209ENST00000494080 MPLKIPQ8TAP9 179 aa11.78□□□□□ -0.52
CCDC88B-209ENST00000494080 ATP5EP2Q5VTU8 51 aa11.78□□□□□ -0.52
CCDC88B-209ENST00000494080 SPEGQ15772 3267 aa11.78□□□□□ -0.52
CCDC88B-209ENST00000494080 TRBV6-8A0A0A6YYG3 113 aa11.77□□□□□ -0.53
CCDC88B-209ENST00000494080 TRBV7-7A0A0K0K1E9 115 aa11.77□□□□□ -0.53
CCDC88B-209ENST00000494080 IBA57-AS1B1ANH7 110 aa11.77□□□□□ -0.53
CCDC88B-209ENST00000494080 NREPQ16612 68 aa11.77□□□□□ -0.53
CCDC88B-209ENST00000494080 SCXQ7RTU7 201 aa11.77□□□□□ -0.53
CCDC88B-209ENST00000494080 IGHV4-28A0A0C4DH34 117 aa11.77□□□□□ -0.53
CCDC88B-209ENST00000494080 TRBV6-4A0A1B0GX49 114 aa11.77□□□□□ -0.53
CCDC88B-209ENST00000494080 LINC00242Q5T6M2 205 aa11.77□□□□□ -0.53
CCDC88B-209ENST00000494080 NHLRC4P0CG21 123 aaPredicted RBP11.76□□□□□ -0.53
CCDC88B-209ENST00000494080 KIF25-AS1Q9Y6Z4 181 aa11.76□□□□□ -0.53
CCDC88B-209ENST00000494080 CCL18P55774 89 aa11.76□□□□□ -0.53
CCDC88B-209ENST00000494080 Q6JHZ5 121 aa11.76□□□□□ -0.53
CCDC88B-209ENST00000494080 CFAP46Q8IYW2 2715 aa11.76□□□□□ -0.53
CCDC88B-209ENST00000494080 EYSQ5T1H1 3165 aa11.75□□□□□ -0.53
CCDC88B-209ENST00000494080 AMELXQ99217 191 aa11.75□□□□□ -0.53
CCDC88B-209ENST00000494080 SNURFQ9Y675 71 aa11.75□□□□□ -0.53
CCDC88B-209ENST00000494080 MUC4Q99102 2169 aa11.75□□□□□ -0.53
CCDC88B-209ENST00000494080 COL27A1Q8IZC6 1860 aaPredicted RBP11.75□□□□□ -0.53
CCDC88B-209ENST00000494080 RMI2Q96E14 147 aa11.75□□□□□ -0.53
CCDC88B-209ENST00000494080 LYRM9A8MSI8 78 aa11.74□□□□□ -0.53
CCDC88B-209ENST00000494080 REG3AQ06141 175 aa11.74□□□□□ -0.53
CCDC88B-209ENST00000494080 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.74□□□□□ -0.53
CCDC88B-209ENST00000494080 FLNAP21333 2647 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms