RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 MYMXA0A1B0GTQ4 84 aa10.89□□□□□ -0.67
SYNE1-227ENST00000489156 CCL25O15444 150 aa10.89□□□□□ -0.67
SYNE1-227ENST00000489156 PLEKHB2Q96CS7 222 aa10.89□□□□□ -0.67
SYNE1-227ENST00000489156 TTTY13Q9BZ97 58 aa10.89□□□□□ -0.67
SYNE1-227ENST00000489156 PLECQ15149 4684 aaKnown RBP10.89□□□□□ -0.67
SYNE1-227ENST00000489156 LBHQ53QV2 105 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-227ENST00000489156 MAPKAPK5-AS1Q8N8E1 139 aa10.89□□□□□ -0.67
SYNE1-227ENST00000489156 CDKN2A-AS1Q9UH64 79 aa10.89□□□□□ -0.67
SYNE1-227ENST00000489156 IGHV1-58A0A0C4DH39 117 aa10.88□□□□□ -0.67
SYNE1-227ENST00000489156 J3QQQ9 107 aa10.88□□□□□ -0.67
SYNE1-227ENST00000489156 COX6A2Q02221 97 aa10.88□□□□□ -0.67
SYNE1-227ENST00000489156 SNHG12Q9BXW3 62 aa10.87□□□□□ -0.67
SYNE1-227ENST00000489156 LGALS3P17931 250 aaKnown RBP10.87□□□□□ -0.67
SYNE1-227ENST00000489156 ZNF815PA8K554 130 aa10.86□□□□□ -0.67
SYNE1-227ENST00000489156 IGHV3-30-3P0DP02 117 aa10.86□□□□□ -0.67
SYNE1-227ENST00000489156 LINC00959A0A1B0GUT2 108 aa10.85□□□□□ -0.67
SYNE1-227ENST00000489156 SS18Q15532 418 aa10.85□□□□□ -0.67
SYNE1-227ENST00000489156 ANGP03950 147 aaKnown RBP10.84□□□□□ -0.67
SYNE1-227ENST00000489156 TSPEAR-AS2P59090 65 aa10.84□□□□□ -0.67
SYNE1-227ENST00000489156 LYSTQ99698 3801 aa10.84□□□□□ -0.67
SYNE1-227ENST00000489156 TRAV8-3A0A0A6YYJ7 113 aa10.83□□□□□ -0.68
SYNE1-227ENST00000489156 IGHV3OR16-9A0A0B4J2B5 98 aa10.83□□□□□ -0.68
SYNE1-227ENST00000489156 IGKV3OR2-268A0A0C4DH90 116 aa10.83□□□□□ -0.68
SYNE1-227ENST00000489156 IGLV5-39A0A0G2JS06 123 aa10.83□□□□□ -0.68
SYNE1-227ENST00000489156 SPINK8P0C7L1 97 aa10.83□□□□□ -0.68
SYNE1-227ENST00000489156 ESRGQ1W209 222 aa10.83□□□□□ -0.68
SYNE1-227ENST00000489156 IGHV3-64A0A075B6Q5 118 aa10.83□□□□□ -0.68
SYNE1-227ENST00000489156 EREGO14944 169 aa10.83□□□□□ -0.68
SYNE1-227ENST00000489156 HSD52Q0P140 79 aa10.83□□□□□ -0.68
SYNE1-227ENST00000489156 LINC00269Q8N2A0 174 aa10.83□□□□□ -0.68
SYNE1-227ENST00000489156 HINT1P49773 126 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-227ENST00000489156 REG3AQ06141 175 aa10.82□□□□□ -0.68
SYNE1-227ENST00000489156 SCGB1D4Q6XE38 83 aa10.82□□□□□ -0.68
SYNE1-227ENST00000489156 SMIM1B2RUZ4 78 aa10.81□□□□□ -0.68
SYNE1-227ENST00000489156 TAL2Q16559 108 aa10.81□□□□□ -0.68
SYNE1-227ENST00000489156 BVES-AS1Q5T3Y7 98 aa10.81□□□□□ -0.68
SYNE1-227ENST00000489156 PRR34Q9NV39 138 aa10.81□□□□□ -0.68
SYNE1-227ENST00000489156 A0A087WZ39 114 aa10.8□□□□□ -0.68
SYNE1-227ENST00000489156 BATFQ16520 125 aa10.8□□□□□ -0.68
SYNE1-227ENST00000489156 CCL18P55774 89 aa10.79□□□□□ -0.68
SYNE1-227ENST00000489156 Q8N3U1 123 aa10.79□□□□□ -0.68
SYNE1-227ENST00000489156 LINC00588Q9Y4M8 146 aa10.79□□□□□ -0.68
SYNE1-227ENST00000489156 WFDC10BQ8IUB3 73 aa10.78□□□□□ -0.68
SYNE1-227ENST00000489156 LINC01561Q8N1V8 128 aa10.78□□□□□ -0.68
SYNE1-227ENST00000489156 NDUFA12Q9UI09 145 aa10.78□□□□□ -0.68
SYNE1-227ENST00000489156 COL5A1-AS1Q5SY13 56 aa10.78□□□□□ -0.68
SYNE1-227ENST00000489156 CD164L2Q6UWJ8 174 aa10.78□□□□□ -0.68
SYNE1-227ENST00000489156 CLPSL2Q6UWE3 100 aa10.77□□□□□ -0.69
SYNE1-227ENST00000489156 UBE2DNLQ8IWF7 75 aa10.77□□□□□ -0.69
SYNE1-227ENST00000489156 KLK12Q9UKR0 248 aa10.77□□□□□ -0.69
SYNE1-227ENST00000489156 XCL1P47992 114 aa10.76□□□□□ -0.69
SYNE1-227ENST00000489156 LINC01556Q5JQF7 62 aa10.76□□□□□ -0.69
SYNE1-227ENST00000489156 HIST1H4GQ99525 98 aa10.76□□□□□ -0.69
SYNE1-227ENST00000489156 TM2D2Q9BX73 214 aa10.76□□□□□ -0.69
SYNE1-227ENST00000489156 SPANXB1Q9NS25 103 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-227ENST00000489156 NDUFA1O15239 70 aa10.76□□□□□ -0.69
SYNE1-227ENST00000489156 C10orf126Q8N4M7 172 aa10.76□□□□□ -0.69
SYNE1-227ENST00000489156 ORAOV1Q8WV07 137 aa10.76□□□□□ -0.69
SYNE1-227ENST00000489156 CHCHD10Q8WYQ3 142 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-227ENST00000489156 TRAV8-4A0A0B4J246 113 aa10.75□□□□□ -0.69
SYNE1-227ENST00000489156 IGHV3-30P01768 117 aa10.75□□□□□ -0.69
SYNE1-227ENST00000489156 IGHV3-33P01772 117 aa10.75□□□□□ -0.69
SYNE1-227ENST00000489156 IGHV3-30-5P0DP03 117 aa10.75□□□□□ -0.69
SYNE1-227ENST00000489156 CEND1Q8N111 149 aa10.75□□□□□ -0.69
SYNE1-227ENST00000489156 A0A0J9YXY3 114 aa10.74□□□□□ -0.69
SYNE1-227ENST00000489156 ENHOQ6UWT2 76 aa10.74□□□□□ -0.69
SYNE1-227ENST00000489156 CRPP02741 224 aa10.74□□□□□ -0.69
SYNE1-227ENST00000489156 SRSF9Q13242 221 aaKnown RBP eCLIP10.74□□□□□ -0.69
SYNE1-227ENST00000489156 C5orf38Q86SI9 138 aa10.74□□□□□ -0.69
SYNE1-227ENST00000489156 VPS13DQ5THJ4 4388 aa10.73□□□□□ -0.69
SYNE1-227ENST00000489156 LY6G6CO95867 125 aa10.73□□□□□ -0.69
SYNE1-227ENST00000489156 DNAH10OSP0CZ25 163 aa10.73□□□□□ -0.69
SYNE1-227ENST00000489156 GCSHP23434 173 aa10.73□□□□□ -0.69
SYNE1-227ENST00000489156 MIAQ16674 131 aa10.73□□□□□ -0.69
SYNE1-227ENST00000489156 A6NDN8 102 aa10.72□□□□□ -0.69
SYNE1-227ENST00000489156 TMEM238C9JI98 176 aa10.72□□□□□ -0.69
SYNE1-227ENST00000489156 COX7A2LO14548 114 aa10.72□□□□□ -0.69
SYNE1-227ENST00000489156 HERV-K104P63124 156 aa10.72□□□□□ -0.69
SYNE1-227ENST00000489156 SFTA2Q6UW10 78 aa10.72□□□□□ -0.69
SYNE1-227ENST00000489156 COX7B2Q8TF08 81 aa10.72□□□□□ -0.69
SYNE1-227ENST00000489156 LINC00476Q8WZB0 136 aa10.72□□□□□ -0.69
SYNE1-227ENST00000489156 ZNF625Q96I27 306 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-227ENST00000489156 UPK3BQ9BT76 320 aa10.72□□□□□ -0.69
SYNE1-227ENST00000489156 Q9H8V8 135 aa10.72□□□□□ -0.69
SYNE1-227ENST00000489156 IGLV10-54A0A075B6I4 117 aa10.71□□□□□ -0.69
SYNE1-227ENST00000489156 TIMM17BO60830 172 aa10.71□□□□□ -0.69
SYNE1-227ENST00000489156 UBE2WQ96B02 151 aa10.71□□□□□ -0.69
SYNE1-227ENST00000489156 DNAH1Q9P2D7 4330 aa10.7□□□□□ -0.7
SYNE1-227ENST00000489156 FOXI1Q12951 378 aa10.7□□□□□ -0.7
SYNE1-227ENST00000489156 Q6ZVH6 145 aa10.7□□□□□ -0.7
SYNE1-227ENST00000489156 PTTG1IPP53801 180 aa10.7□□□□□ -0.7
SYNE1-227ENST00000489156 CIRBPQ14011 172 aaKnown RBP10.7□□□□□ -0.7
SYNE1-227ENST00000489156 FXYD2P54710 66 aa10.69□□□□□ -0.7
SYNE1-227ENST00000489156 Q8IZM0 81 aa10.69□□□□□ -0.7
SYNE1-227ENST00000489156 LITAFQ99732 161 aa10.69□□□□□ -0.7
SYNE1-227ENST00000489156 ALMS1Q8TCU4 4167 aa10.69□□□□□ -0.7
SYNE1-227ENST00000489156 MALP21145 153 aa10.68□□□□□ -0.7
SYNE1-227ENST00000489156 TOMM7Q9P0U1 55 aa10.68□□□□□ -0.7
SYNE1-227ENST00000489156 TMEM238LA0A1B0GVL6 79 aa10.68□□□□□ -0.7
SYNE1-227ENST00000489156 GAGE12HA6NDE8 117 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms