RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FAM19A3Q7Z5A8 133 aa12.73□□□□□ -0.37
VIM-206ENST00000487938 PRIMA1Q86XR5 153 aa12.73□□□□□ -0.37
VIM-206ENST00000487938 ACANP16112 2415 aa12.73□□□□□ -0.37
VIM-206ENST00000487938 A0A1B0GV72 72 aa12.72□□□□□ -0.37
VIM-206ENST00000487938 F5H768 121 aa12.72□□□□□ -0.37
VIM-206ENST00000487938 MEIG1Q5JSS6 88 aa12.72□□□□□ -0.37
VIM-206ENST00000487938 SOSTDC1Q6X4U4 206 aa12.72□□□□□ -0.37
VIM-206ENST00000487938 C16orf74Q96GX8 76 aa12.72□□□□□ -0.37
VIM-206ENST00000487938 TMEM243Q9BU79 118 aa12.72□□□□□ -0.37
VIM-206ENST00000487938 C19orf73Q9NVV2 129 aa12.71□□□□□ -0.37
VIM-206ENST00000487938 ANK3Q12955 4377 aaKnown RBP12.71□□□□□ -0.38
VIM-206ENST00000487938 IGKV3OR2-268A0A0C4DH90 116 aa12.71□□□□□ -0.38
VIM-206ENST00000487938 LST1O00453 97 aa12.71□□□□□ -0.38
VIM-206ENST00000487938 IGLV1-51P01701 117 aa12.7□□□□□ -0.38
VIM-206ENST00000487938 UBE2WQ96B02 151 aa12.7□□□□□ -0.38
VIM-206ENST00000487938 TRGV4A0A0C4DH28 118 aa12.69□□□□□ -0.38
VIM-206ENST00000487938 CMC4P56277 68 aaPredicted RBP12.69□□□□□ -0.38
VIM-206ENST00000487938 LINC01600Q96MT4 127 aa12.69□□□□□ -0.38
VIM-206ENST00000487938 GAGE6Q13070 117 aa12.69□□□□□ -0.38
VIM-206ENST00000487938 CSNK1G2-AS1Q8NCQ2 148 aa12.69□□□□□ -0.38
VIM-206ENST00000487938 RNASE1P07998 156 aaKnown RBP12.68□□□□□ -0.38
VIM-206ENST00000487938 C16orf95Q9H693 158 aa12.68□□□□□ -0.38
VIM-206ENST00000487938 MTORP42345 2549 aa12.67□□□□□ -0.38
VIM-206ENST00000487938 PDZD2O15018 2839 aa12.67□□□□□ -0.38
VIM-206ENST00000487938 TRAV8-4A0A0B4J246 113 aa12.67□□□□□ -0.38
VIM-206ENST00000487938 TRBV6-4A0A1B0GX49 114 aa12.66□□□□□ -0.38
VIM-206ENST00000487938 OVOL2Q9BRP0 275 aa12.66□□□□□ -0.38
VIM-206ENST00000487938 H3BT86 120 aa12.65□□□□□ -0.38
VIM-206ENST00000487938 IGLV4-60A0A075B6I1 120 aa12.65□□□□□ -0.38
VIM-206ENST00000487938 CRLF1O75462 422 aa12.64□□□□□ -0.39
VIM-206ENST00000487938 FHL2Q14192 279 aa12.64□□□□□ -0.39
VIM-206ENST00000487938 TOMM7Q9P0U1 55 aa12.64□□□□□ -0.39
VIM-206ENST00000487938 HERV-K104P63124 156 aa12.63□□□□□ -0.39
VIM-206ENST00000487938 CHCHD5Q9BSY4 110 aa12.63□□□□□ -0.39
VIM-206ENST00000487938 COPS9Q8WXC6 57 aa12.62□□□□□ -0.39
VIM-206ENST00000487938 CITED1Q99966 193 aa12.62□□□□□ -0.39
VIM-206ENST00000487938 FAM110AQ9BQ89 295 aa12.62□□□□□ -0.39
VIM-206ENST00000487938 TRBV6-8A0A0A6YYG3 113 aa12.62□□□□□ -0.39
VIM-206ENST00000487938 DEFB130BP0DP73 79 aa12.62□□□□□ -0.39
VIM-206ENST00000487938 DEFB130AP0DP74 79 aa12.62□□□□□ -0.39
VIM-206ENST00000487938 COX7B2Q8TF08 81 aa12.62□□□□□ -0.39
VIM-206ENST00000487938 COX7A2LO14548 114 aa12.61□□□□□ -0.39
VIM-206ENST00000487938 SNCGO76070 127 aa12.61□□□□□ -0.39
VIM-206ENST00000487938 SHISA2Q6UWI4 295 aa12.61□□□□□ -0.39
VIM-206ENST00000487938 KMT2BQ9UMN6 2715 aaPredicted RBP12.6□□□□□ -0.39
VIM-206ENST00000487938 HELZ2Q9BYK8 2649 aaKnown RBP12.59□□□□□ -0.39
VIM-206ENST00000487938 ITPR2Q14571 2701 aa12.59□□□□□ -0.39
VIM-206ENST00000487938 MIR7-3HGQ8N6C7 128 aa12.59□□□□□ -0.39
VIM-206ENST00000487938 C15orf53Q8NAA6 179 aa12.58□□□□□ -0.4
VIM-206ENST00000487938 HILS1P60008 231 aa12.58□□□□□ -0.4
VIM-206ENST00000487938 C5orf38Q86SI9 138 aa12.58□□□□□ -0.4
VIM-206ENST00000487938 GAGE2BQ13066 116 aa12.57□□□□□ -0.4
VIM-206ENST00000487938 GAGE2EQ4V326 116 aa12.57□□□□□ -0.4
VIM-206ENST00000487938 SMR3AQ99954 134 aa12.57□□□□□ -0.4
VIM-206ENST00000487938 GAGE2DQ9UEU5 116 aa12.57□□□□□ -0.4
VIM-206ENST00000487938 KRTAP10-3P60369 221 aa12.57□□□□□ -0.4
VIM-206ENST00000487938 UNC79Q9P2D8 2635 aa12.56□□□□□ -0.4
VIM-206ENST00000487938 TRAV26-1A0A087WT03 109 aa12.56□□□□□ -0.4
VIM-206ENST00000487938 IGHV3OR16-9A0A0B4J2B5 98 aa12.56□□□□□ -0.4
VIM-206ENST00000487938 LINC00158P58513 81 aa12.56□□□□□ -0.4
VIM-206ENST00000487938 FAM218AQ96MZ4 157 aa12.55□□□□□ -0.4
VIM-206ENST00000487938 FN1P02751 2386 aaKnown RBP12.55□□□□□ -0.4
VIM-206ENST00000487938 TTC32Q5I0X7 151 aa12.55□□□□□ -0.4
VIM-206ENST00000487938 DEFB121Q5J5C9 76 aa12.55□□□□□ -0.4
VIM-206ENST00000487938 ANAPC13Q9BS18 74 aa12.55□□□□□ -0.4
VIM-206ENST00000487938 LINC00337Q8N6G1 96 aa12.54□□□□□ -0.4
VIM-206ENST00000487938 SND1-IT1Q9HBX3 110 aa12.54□□□□□ -0.4
VIM-206ENST00000487938 IGKV2-28A0A075B6P5 120 aa12.53□□□□□ -0.4
VIM-206ENST00000487938 IGKV2D-28P01615 120 aa12.53□□□□□ -0.4
VIM-206ENST00000487938 PF4P02776 101 aa12.53□□□□□ -0.4
VIM-206ENST00000487938 GYPEP15421 78 aa12.53□□□□□ -0.4
VIM-206ENST00000487938 PFN2P35080 140 aa12.53□□□□□ -0.4
VIM-206ENST00000487938 C11orf68Q9H3H3 251 aaKnown RBP12.53□□□□□ -0.4
VIM-206ENST00000487938 A0A096LPF7 62 aa12.52□□□□□ -0.41
VIM-206ENST00000487938 NBEAL2Q6ZNJ1 2754 aa12.52□□□□□ -0.41
VIM-206ENST00000487938 A0A087WZ39 114 aa12.51□□□□□ -0.41
VIM-206ENST00000487938 LINC00959A0A1B0GUT2 108 aa12.51□□□□□ -0.41
VIM-206ENST00000487938 BAALC-AS2P0C853 105 aa12.51□□□□□ -0.41
VIM-206ENST00000487938 TRAV13-2A0A0B4J235 113 aa12.51□□□□□ -0.41
VIM-206ENST00000487938 CRPP02741 224 aa12.51□□□□□ -0.41
VIM-206ENST00000487938 Q9HAA7 133 aa12.5□□□□□ -0.41
VIM-206ENST00000487938 CCL18P55774 89 aa12.5□□□□□ -0.41
VIM-206ENST00000487938 CLPSL2Q6UWE3 100 aa12.5□□□□□ -0.41
VIM-206ENST00000487938 KIR2DL5BQ8NHK3 375 aa12.5□□□□□ -0.41
VIM-206ENST00000487938 TRACP01848 142 aa12.49□□□□□ -0.41
VIM-206ENST00000487938 XCL1P47992 114 aa12.49□□□□□ -0.41
VIM-206ENST00000487938 NHLRC4P0CG21 123 aaPredicted RBP12.48□□□□□ -0.41
VIM-206ENST00000487938 RPL28P46779 137 aaKnown RBP12.48□□□□□ -0.41
VIM-206ENST00000487938 LINC00482Q8N8I6 264 aa12.48□□□□□ -0.41
VIM-206ENST00000487938 SPATA3Q8NHX4 192 aa12.48□□□□□ -0.41
VIM-206ENST00000487938 PPDPFQ9H3Y8 114 aa12.48□□□□□ -0.41
VIM-206ENST00000487938 GCN1Q92616 2671 aaKnown RBP12.48□□□□□ -0.41
VIM-206ENST00000487938 FASNP49327 2511 aaKnown RBP12.48□□□□□ -0.41
VIM-206ENST00000487938 NDUFV3P56181 108 aaKnown RBP12.48□□□□□ -0.41
VIM-206ENST00000487938 C6orf226Q5I0X4 101 aa12.48□□□□□ -0.41
VIM-206ENST00000487938 X6R8D5 127 aa12.48□□□□□ -0.41
VIM-206ENST00000487938 FAM240AA0A1B0GVK7 77 aa12.47□□□□□ -0.41
VIM-206ENST00000487938 SMIM11BQ8TCY0 68 aa12.47□□□□□ -0.41
VIM-206ENST00000487938 C22orf24Q9Y442 160 aa12.47□□□□□ -0.41
VIM-206ENST00000487938 HIVEP2P31629 2446 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms