RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 HERVK_113P63121 156 aa13.47□□□□□ -0.25
VIM-203ENST00000469543 IGLV4-60A0A075B6I1 120 aa13.46□□□□□ -0.25
VIM-203ENST00000469543 UBE2L6O14933 153 aa13.46□□□□□ -0.25
VIM-203ENST00000469543 FHL2Q14192 279 aa13.46□□□□□ -0.25
VIM-203ENST00000469543 J3QR89 54 aa13.46□□□□□ -0.26
VIM-203ENST00000469543 CRLF1O75462 422 aa13.46□□□□□ -0.26
VIM-203ENST00000469543 ANKRD29Q8N6D5 301 aa13.46□□□□□ -0.26
VIM-203ENST00000469543 SPANXDQ9BXN6 97 aa13.46□□□□□ -0.26
VIM-203ENST00000469543 SPANXCQ9NY87 97 aa13.46□□□□□ -0.26
VIM-203ENST00000469543 DEFB4AO15263 64 aa13.45□□□□□ -0.26
VIM-203ENST00000469543 IGLV5-39A0A0G2JS06 123 aa13.45□□□□□ -0.26
VIM-203ENST00000469543 NDUFA1O15239 70 aa13.45□□□□□ -0.26
VIM-203ENST00000469543 LYRM7Q5U5X0 104 aa13.45□□□□□ -0.26
VIM-203ENST00000469543 TMEM243Q9BU79 118 aa13.45□□□□□ -0.26
VIM-203ENST00000469543 F5H768 121 aa13.44□□□□□ -0.26
VIM-203ENST00000469543 SLC25A20O43772 301 aa13.44□□□□□ -0.26
VIM-203ENST00000469543 A0A096LPF7 62 aa13.44□□□□□ -0.26
VIM-203ENST00000469543 CLEC2BQ92478 149 aa13.44□□□□□ -0.26
VIM-203ENST00000469543 OVOL2Q9BRP0 275 aa13.44□□□□□ -0.26
VIM-203ENST00000469543 INAFM1C9JVW0 142 aa13.43□□□□□ -0.26
VIM-203ENST00000469543 TEN1Q86WV5 123 aa13.43□□□□□ -0.26
VIM-203ENST00000469543 CSDC2Q9Y534 153 aaKnown RBP13.43□□□□□ -0.26
VIM-203ENST00000469543 SOSTDC1Q6X4U4 206 aa13.43□□□□□ -0.26
VIM-203ENST00000469543 SIGMAR1Q99720 223 aa13.43□□□□□ -0.26
VIM-203ENST00000469543 FLNBO75369 2602 aaKnown RBP13.43□□□□□ -0.26
VIM-203ENST00000469543 TRBV6-4A0A1B0GX49 114 aa13.42□□□□□ -0.26
VIM-203ENST00000469543 PRIMA1Q86XR5 153 aa13.42□□□□□ -0.26
VIM-203ENST00000469543 CMC4P56277 68 aaPredicted RBP13.41□□□□□ -0.26
VIM-203ENST00000469543 ICOSQ9Y6W8 199 aa13.41□□□□□ -0.26
VIM-203ENST00000469543 FAM110AQ9BQ89 295 aa13.41□□□□□ -0.26
VIM-203ENST00000469543 CHCHD5Q9BSY4 110 aa13.41□□□□□ -0.26
VIM-203ENST00000469543 LINC00308Q8TCZ7 52 aa13.4□□□□□ -0.26
VIM-203ENST00000469543 SPATA25Q9BR10 227 aa13.4□□□□□ -0.26
VIM-203ENST00000469543 TOMM7Q9P0U1 55 aa13.4□□□□□ -0.26
VIM-203ENST00000469543 RPL13AP40429 203 aaKnown RBP13.39□□□□□ -0.27
VIM-203ENST00000469543 CDIP1Q9H305 208 aa13.39□□□□□ -0.27
VIM-203ENST00000469543 TRBV30A0A0K0K1B3 111 aa13.39□□□□□ -0.27
VIM-203ENST00000469543 MEIG1Q5JSS6 88 aa13.39□□□□□ -0.27
VIM-203ENST00000469543 TRBV6-8A0A0A6YYG3 113 aa13.38□□□□□ -0.27
VIM-203ENST00000469543 LINC01620Q4KN68 170 aa13.38□□□□□ -0.27
VIM-203ENST00000469543 PKD1L1Q8TDX9 2849 aa13.37□□□□□ -0.27
VIM-203ENST00000469543 CIRBPQ14011 172 aaKnown RBP13.37□□□□□ -0.27
VIM-203ENST00000469543 TEX49A0A1B0GTD5 131 aa13.36□□□□□ -0.27
VIM-203ENST00000469543 ATP6V0E2Q8NHE4 81 aa13.36□□□□□ -0.27
VIM-203ENST00000469543 PPDPFLQ8WWR9 84 aa13.36□□□□□ -0.27
VIM-203ENST00000469543 ATXN8Q156A1 80 aa13.36□□□□□ -0.27
VIM-203ENST00000469543 FAM19A3Q7Z5A8 133 aa13.36□□□□□ -0.27
VIM-203ENST00000469543 NTN5Q8WTR8 489 aaPredicted RBP13.36□□□□□ -0.27
VIM-203ENST00000469543 CLPSL2Q6UWE3 100 aa13.36□□□□□ -0.27
VIM-203ENST00000469543 X6R8D5 127 aa13.36□□□□□ -0.27
VIM-203ENST00000469543 C5orf38Q86SI9 138 aa13.35□□□□□ -0.27
VIM-203ENST00000469543 GYPEP15421 78 aa13.35□□□□□ -0.27
VIM-203ENST00000469543 TIMM17BO60830 172 aa13.34□□□□□ -0.27
VIM-203ENST00000469543 DEFB135Q30KP9 77 aa13.34□□□□□ -0.27
VIM-203ENST00000469543 TMEM262E9PQX1 116 aa13.33□□□□□ -0.28
VIM-203ENST00000469543 H7C423 109 aa13.33□□□□□ -0.28
VIM-203ENST00000469543 MT-ATP8P03928 68 aa13.33□□□□□ -0.28
VIM-203ENST00000469543 C11orf68Q9H3H3 251 aaKnown RBP13.33□□□□□ -0.28
VIM-203ENST00000469543 XGP55808 180 aa13.32□□□□□ -0.28
VIM-203ENST00000469543 Q8N3U1 123 aa13.32□□□□□ -0.28
VIM-203ENST00000469543 IFITM1P13164 125 aa13.32□□□□□ -0.28
VIM-203ENST00000469543 FAM222AQ5U5X8 452 aa13.31□□□□□ -0.28
VIM-203ENST00000469543 IGHV3OR16-9A0A0B4J2B5 98 aa13.3□□□□□ -0.28
VIM-203ENST00000469543 STAB1Q9NY15 2570 aa13.29□□□□□ -0.28
VIM-203ENST00000469543 COX6CP09669 75 aa13.29□□□□□ -0.28
VIM-203ENST00000469543 XCL1P47992 114 aa13.28□□□□□ -0.28
VIM-203ENST00000469543 COX7B2Q8TF08 81 aa13.28□□□□□ -0.28
VIM-203ENST00000469543 C2orf82Q6UX34 121 aa13.28□□□□□ -0.28
VIM-203ENST00000469543 MIR7-3HGQ8N6C7 128 aa13.28□□□□□ -0.28
VIM-203ENST00000469543 TRBV10-2A0A0K0K1G8 114 aa13.27□□□□□ -0.28
VIM-203ENST00000469543 PFN2P35080 140 aa13.27□□□□□ -0.29
VIM-203ENST00000469543 KIR2DL5BQ8NHK3 375 aa13.27□□□□□ -0.29
VIM-203ENST00000469543 F8P00451 2351 aa13.27□□□□□ -0.29
VIM-203ENST00000469543 ANK2Q01484 3957 aa13.27□□□□□ -0.29
VIM-203ENST00000469543 RNF183Q96D59 192 aa13.26□□□□□ -0.29
VIM-203ENST00000469543 LINC00959A0A1B0GUT2 108 aa13.26□□□□□ -0.29
VIM-203ENST00000469543 LST1O00453 97 aa13.26□□□□□ -0.29
VIM-203ENST00000469543 LINC00158P58513 81 aa13.24□□□□□ -0.29
VIM-203ENST00000469543 LINC00612Q8N6U2 182 aa13.24□□□□□ -0.29
VIM-203ENST00000469543 CIDEAO60543 219 aa13.23□□□□□ -0.29
VIM-203ENST00000469543 CELA1Q9UNI1 258 aa13.23□□□□□ -0.29
VIM-203ENST00000469543 IGLV10-54A0A075B6I4 117 aa13.22□□□□□ -0.29
VIM-203ENST00000469543 HERV-K104P63124 156 aa13.22□□□□□ -0.29
VIM-203ENST00000469543 PRO0255Q9UI72 69 aa13.22□□□□□ -0.29
VIM-203ENST00000469543 FBN1P35555 2871 aaKnown RBP13.22□□□□□ -0.29
VIM-203ENST00000469543 PAX4O43316 350 aa13.22□□□□□ -0.29
VIM-203ENST00000469543 LINC00337Q8N6G1 96 aa13.22□□□□□ -0.29
VIM-203ENST00000469543 FAM218AQ96MZ4 157 aa13.22□□□□□ -0.29
VIM-203ENST00000469543 IGKV2-28A0A075B6P5 120 aa13.21□□□□□ -0.29
VIM-203ENST00000469543 IGKV2D-28P01615 120 aa13.21□□□□□ -0.29
VIM-203ENST00000469543 A0A087WZ39 114 aa13.21□□□□□ -0.3
VIM-203ENST00000469543 IGHV4-28A0A0C4DH34 117 aa13.21□□□□□ -0.3
VIM-203ENST00000469543 SHISA2Q6UWI4 295 aa13.21□□□□□ -0.3
VIM-203ENST00000469543 C9orf66Q5T8R8 295 aa13.2□□□□□ -0.3
VIM-203ENST00000469543 HTN3P15516 51 aa13.19□□□□□ -0.3
VIM-203ENST00000469543 LINC00269Q8N2A0 174 aa13.19□□□□□ -0.3
VIM-203ENST00000469543 SND1-IT1Q9HBX3 110 aa13.19□□□□□ -0.3
VIM-203ENST00000469543 TENM3Q9P273 2699 aa13.19□□□□□ -0.3
VIM-203ENST00000469543 UBE2WQ96B02 151 aa13.19□□□□□ -0.3
VIM-203ENST00000469543 NOTCH1P46531 2555 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms