RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 COX17Q14061 63 aa2.24□□□□□ -2.05
VPS50-206ENST00000443443 Q6ZRN7 208 aaPredicted RBP2.24□□□□□ -2.05
VPS50-206ENST00000443443 ADGRB2O60241 1585 aa2.23□□□□□ -2.05
VPS50-206ENST00000443443 COL5A3P25940 1745 aaPredicted RBP2.23□□□□□ -2.05
VPS50-206ENST00000443443 IFI27P40305 119 aaPredicted RBP2.23□□□□□ -2.05
VPS50-206ENST00000443443 CAV3P56539 151 aa2.23□□□□□ -2.05
VPS50-206ENST00000443443 FDCSPQ8NFU4 85 aa2.23□□□□□ -2.05
VPS50-206ENST00000443443 SMIM4Q8WVI0 70 aa2.23□□□□□ -2.05
VPS50-206ENST00000443443 TIAM1Q13009 1591 aa2.23□□□□□ -2.05
VPS50-206ENST00000443443 DLG5Q8TDM6 1919 aa2.23□□□□□ -2.05
VPS50-206ENST00000443443 CR1P17927 2039 aa2.22□□□□□ -2.05
VPS50-206ENST00000443443 TARBP1Q13395 1621 aaKnown RBP2.22□□□□□ -2.05
VPS50-206ENST00000443443 A0A087WVE0 104 aa2.22□□□□□ -2.05
VPS50-206ENST00000443443 HCRTO43612 131 aa2.22□□□□□ -2.05
VPS50-206ENST00000443443 Q6ZQY7 126 aa2.22□□□□□ -2.05
VPS50-206ENST00000443443 PROK2Q9HC23 129 aa2.22□□□□□ -2.05
VPS50-206ENST00000443443 UBE2D4Q9Y2X8 147 aa2.22□□□□□ -2.05
VPS50-206ENST00000443443 ASXL1Q8IXJ9 1541 aa2.22□□□□□ -2.05
VPS50-206ENST00000443443 PREX2Q70Z35 1606 aa2.21□□□□□ -2.06
VPS50-206ENST00000443443 KIAA0100Q14667 2235 aaKnown RBP2.21□□□□□ -2.06
VPS50-206ENST00000443443 TRAV1-2A0A0B4J238 106 aa2.21□□□□□ -2.06
VPS50-206ENST00000443443 H3BVH4 76 aa2.21□□□□□ -2.06
VPS50-206ENST00000443443 KRTAP21-2Q3LI59 83 aa2.21□□□□□ -2.06
VPS50-206ENST00000443443 KRTAP13-1Q8IUC0 172 aa2.21□□□□□ -2.06
VPS50-206ENST00000443443 BRWD1Q9NSI6 2320 aa2.21□□□□□ -2.06
VPS50-206ENST00000443443 LINC00846Q9NV44 126 aa2.21□□□□□ -2.06
VPS50-206ENST00000443443 HILPDAQ9Y5L2 63 aa2.21□□□□□ -2.06
VPS50-206ENST00000443443 BTAF1O14981 1849 aa2.21□□□□□ -2.06
VPS50-206ENST00000443443 UNC13CQ8NB66 2214 aa2.21□□□□□ -2.06
VPS50-206ENST00000443443 KDM3BQ7LBC6 1761 aa2.21□□□□□ -2.06
VPS50-206ENST00000443443 SPAG17Q6Q759 2223 aa2.2□□□□□ -2.06
VPS50-206ENST00000443443 TRGV1A0A0A0MS02 117 aa2.2□□□□□ -2.06
VPS50-206ENST00000443443 ACYP2P14621 99 aa2.2□□□□□ -2.06
VPS50-206ENST00000443443 ZNF137PP52743 207 aa2.2□□□□□ -2.06
VPS50-206ENST00000443443 GNG13Q9P2W3 67 aa2.2□□□□□ -2.06
VPS50-206ENST00000443443 SCN7AQ01118 1682 aa2.2□□□□□ -2.06
VPS50-206ENST00000443443 URB2Q14146 1524 aaKnown RBP2.2□□□□□ -2.06
VPS50-206ENST00000443443 CCDC180Q9P1Z9 1646 aa2.2□□□□□ -2.06
VPS50-206ENST00000443443 NKTRP30414 1462 aaKnown RBP2.2□□□□□ -2.06
VPS50-206ENST00000443443 LAMA4Q16363 1823 aa2.19□□□□□ -2.06
VPS50-206ENST00000443443 SHANK1Q9Y566 2161 aa2.19□□□□□ -2.06
VPS50-206ENST00000443443 Q96NJ1 140 aa2.19□□□□□ -2.06
VPS50-206ENST00000443443 CCL19Q99731 98 aa2.19□□□□□ -2.06
VPS50-206ENST00000443443 PDCD11Q14690 1871 aaKnown RBP2.19□□□□□ -2.06
VPS50-206ENST00000443443 ARFGEF1Q9Y6D6 1849 aa2.19□□□□□ -2.06
VPS50-206ENST00000443443 BAZ2BQ9UIF8 2168 aaKnown RBP2.19□□□□□ -2.06
VPS50-206ENST00000443443 PI4KAP42356 2102 aa2.18□□□□□ -2.06
VPS50-206ENST00000443443 GBF1Q92538 1859 aa2.18□□□□□ -2.06
VPS50-206ENST00000443443 SHROOM3Q8TF72 1996 aa2.18□□□□□ -2.06
VPS50-206ENST00000443443 MED12Q93074 2177 aa2.18□□□□□ -2.06
VPS50-206ENST00000443443 RGPD1P0DJD0 1748 aa2.18□□□□□ -2.06
VPS50-206ENST00000443443 A0A1B0GUT8 65 aa2.18□□□□□ -2.06
VPS50-206ENST00000443443 C3orf79P0CE67 100 aa2.18□□□□□ -2.06
VPS50-206ENST00000443443 DEFB107AQ8IZN7 70 aa2.18□□□□□ -2.06
VPS50-206ENST00000443443 LMTK2Q8IWU2 1503 aa2.17□□□□□ -2.06
VPS50-206ENST00000443443 ESPL1Q14674 2120 aa2.17□□□□□ -2.06
VPS50-206ENST00000443443 H0Y9P7 68 aa2.17□□□□□ -2.06
VPS50-206ENST00000443443 SPRR4Q96PI1 79 aa2.17□□□□□ -2.06
VPS50-206ENST00000443443 C1orf167Q5SNV9 1468 aa2.17□□□□□ -2.06
VPS50-206ENST00000443443 PLXNC1O60486 1568 aa2.17□□□□□ -2.06
VPS50-206ENST00000443443 ARFGEF2Q9Y6D5 1785 aa2.17□□□□□ -2.06
VPS50-206ENST00000443443 ARFGEF3Q5TH69 2177 aa2.17□□□□□ -2.06
VPS50-206ENST00000443443 ALPK2Q86TB3 2170 aa2.16□□□□□ -2.06
VPS50-206ENST00000443443 LOC285556D6RIA3 1793 aa2.16□□□□□ -2.06
VPS50-206ENST00000443443 ATP7BP35670 1465 aa2.16□□□□□ -2.06
VPS50-206ENST00000443443 J3QRE1 110 aa2.16□□□□□ -2.06
VPS50-206ENST00000443443 OBSCN-AS1Q96MR7 158 aa2.16□□□□□ -2.06
VPS50-206ENST00000443443 COL5A1P20908 1838 aaPredicted RBP2.15□□□□□ -2.06
VPS50-206ENST00000443443 TRBV7-4A0A0J9YYF1 115 aa2.15□□□□□ -2.07
VPS50-206ENST00000443443 ATXN8Q156A1 80 aa2.15□□□□□ -2.07
VPS50-206ENST00000443443 BRD3OSQ6XYD6 125 aa2.15□□□□□ -2.07
VPS50-206ENST00000443443 TMEM263Q8WUH6 116 aaKnown RBP2.15□□□□□ -2.07
VPS50-206ENST00000443443 ABCA9Q8IUA7 1624 aa2.15□□□□□ -2.07
VPS50-206ENST00000443443 SIPA1L3O60292 1781 aaPredicted RBP2.15□□□□□ -2.07
VPS50-206ENST00000443443 ITSN1Q15811 1721 aa2.14□□□□□ -2.07
VPS50-206ENST00000443443 PHRF1Q9P1Y6 1649 aaKnown RBP2.14□□□□□ -2.07
VPS50-206ENST00000443443 NDUFB1O75438 58 aa2.14□□□□□ -2.07
VPS50-206ENST00000443443 PLAC8Q9NZF1 115 aa2.14□□□□□ -2.07
VPS50-206ENST00000443443 SPTBP11277 2137 aa2.14□□□□□ -2.07
VPS50-206ENST00000443443 DOCK11Q5JSL3 2073 aa2.13□□□□□ -2.07
VPS50-206ENST00000443443 ZMYM4Q5VZL5 1548 aa2.13□□□□□ -2.07
VPS50-206ENST00000443443 TRBV30A0A0K0K1B3 111 aa2.13□□□□□ -2.07
VPS50-206ENST00000443443 C10orf99Q6UWK7 81 aa2.13□□□□□ -2.07
VPS50-206ENST00000443443 UNQ6190/PRO20217Q6UXQ8 127 aa2.13□□□□□ -2.07
VPS50-206ENST00000443443 PIK3C2BO00750 1634 aa2.13□□□□□ -2.07
VPS50-206ENST00000443443 RAPGEF6Q8TEU7 1601 aa2.13□□□□□ -2.07
VPS50-206ENST00000443443 TNRC6BQ9UPQ9 1833 aaKnown RBP2.12□□□□□ -2.07
VPS50-206ENST00000443443 CDC42BPGQ6DT37 1551 aa2.12□□□□□ -2.07
VPS50-206ENST00000443443 C10orf113Q5VZT2 155 aa2.12□□□□□ -2.07
VPS50-206ENST00000443443 SPATA8Q6RVD6 105 aa2.12□□□□□ -2.07
VPS50-206ENST00000443443 CD163L1Q9NR16 1453 aa2.12□□□□□ -2.07
VPS50-206ENST00000443443 PCDH15Q96QU1 1955 aa2.12□□□□□ -2.07
VPS50-206ENST00000443443 RTTNQ86VV8 2226 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 NUP188Q5SRE5 1749 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 CEP170BQ9Y4F5 1589 aaPredicted RBP2.11□□□□□ -2.07
VPS50-206ENST00000443443 DOCK10Q96BY6 2186 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 FXYD6-FXYD2A0A087WZ82 144 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 S100A3P33764 101 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 KRTAP12-3P60328 96 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 KRTAP12-4P60329 112 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms