RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.2□□□□□ -0.62
SCARF1-203ENST00000434376 NHLRC4P0CG21 123 aaPredicted RBP11.2□□□□□ -0.62
SCARF1-203ENST00000434376 AMELXQ99217 191 aa11.2□□□□□ -0.62
SCARF1-203ENST00000434376 CDKN2A-AS1Q9UH64 79 aa11.2□□□□□ -0.62
SCARF1-203ENST00000434376 C11orf72Q8NBR9 251 aa11.19□□□□□ -0.62
SCARF1-203ENST00000434376 CHCHD5Q9BSY4 110 aa11.19□□□□□ -0.62
SCARF1-203ENST00000434376 ADAMTSL4-AS1Q5T5F5 129 aa11.19□□□□□ -0.62
SCARF1-203ENST00000434376 RNF152Q8N8N0 203 aa11.19□□□□□ -0.62
SCARF1-203ENST00000434376 ODF3Q96PU9 254 aa11.19□□□□□ -0.62
SCARF1-203ENST00000434376 ICOSQ9Y6W8 199 aa11.19□□□□□ -0.62
SCARF1-203ENST00000434376 HERV-K104P63124 156 aa11.18□□□□□ -0.62
SCARF1-203ENST00000434376 MEIG1Q5JSS6 88 aa11.18□□□□□ -0.62
SCARF1-203ENST00000434376 RPL13AP40429 203 aaKnown RBP11.18□□□□□ -0.62
SCARF1-203ENST00000434376 Q8N2B8 174 aa11.18□□□□□ -0.62
SCARF1-203ENST00000434376 CITED1Q99966 193 aa11.18□□□□□ -0.62
SCARF1-203ENST00000434376 ANK3Q12955 4377 aaKnown RBP11.18□□□□□ -0.62
SCARF1-203ENST00000434376 TRBV6-5A0A0K0K1A5 114 aa11.17□□□□□ -0.62
SCARF1-203ENST00000434376 UBE2L6O14933 153 aa11.17□□□□□ -0.62
SCARF1-203ENST00000434376 RPL36AP83881 106 aaKnown RBP11.17□□□□□ -0.62
SCARF1-203ENST00000434376 RPL36ALQ969Q0 106 aaKnown RBP11.17□□□□□ -0.62
SCARF1-203ENST00000434376 TRBV10-2A0A0K0K1G8 114 aa11.16□□□□□ -0.62
SCARF1-203ENST00000434376 COX6A2Q02221 97 aa11.16□□□□□ -0.62
SCARF1-203ENST00000434376 SBSPONQ8IVN8 264 aa11.16□□□□□ -0.62
SCARF1-203ENST00000434376 DEFB135Q30KP9 77 aa11.16□□□□□ -0.62
SCARF1-203ENST00000434376 RHOHQ15669 191 aa11.15□□□□□ -0.62
SCARF1-203ENST00000434376 A0A0B4J2C4 111 aa11.15□□□□□ -0.62
SCARF1-203ENST00000434376 KRTAP10-3P60369 221 aa11.15□□□□□ -0.62
SCARF1-203ENST00000434376 H7C423 109 aa11.15□□□□□ -0.62
SCARF1-203ENST00000434376 RS1O15537 224 aa11.15□□□□□ -0.62
SCARF1-203ENST00000434376 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.15□□□□□ -0.62
SCARF1-203ENST00000434376 CHCHD7Q9BUK0 85 aa11.15□□□□□ -0.62
SCARF1-203ENST00000434376 UBE2D4Q9Y2X8 147 aa11.12□□□□□ -0.63
SCARF1-203ENST00000434376 SHISA2Q6UWI4 295 aa11.12□□□□□ -0.63
SCARF1-203ENST00000434376 RNASE1P07998 156 aaKnown RBP11.11□□□□□ -0.63
SCARF1-203ENST00000434376 GIG44P09565 113 aaPredicted RBP11.11□□□□□ -0.63
SCARF1-203ENST00000434376 NTM-AS1Q6ZSK4 140 aa11.11□□□□□ -0.63
SCARF1-203ENST00000434376 C5orf38Q86SI9 138 aa11.11□□□□□ -0.63
SCARF1-203ENST00000434376 Q9H8V8 135 aa11.11□□□□□ -0.63
SCARF1-203ENST00000434376 K7EQD1 137 aa11.11□□□□□ -0.63
SCARF1-203ENST00000434376 TENM3Q9P273 2699 aa11.1□□□□□ -0.63
SCARF1-203ENST00000434376 IGLV10-54A0A075B6I4 117 aa11.1□□□□□ -0.63
SCARF1-203ENST00000434376 HILS1P60008 231 aa11.1□□□□□ -0.63
SCARF1-203ENST00000434376 RPL32P62910 135 aaKnown RBP11.1□□□□□ -0.63
SCARF1-203ENST00000434376 FAM236AA0A1B0GUQ0 79 aa11.1□□□□□ -0.63
SCARF1-203ENST00000434376 FAM236BA0A1B0GV22 79 aa11.1□□□□□ -0.63
SCARF1-203ENST00000434376 TRBV30A0A0K0K1B3 111 aa11.09□□□□□ -0.63
SCARF1-203ENST00000434376 TMEM86BQ8N661 226 aa11.09□□□□□ -0.63
SCARF1-203ENST00000434376 FAM104AQ969W3 186 aa11.09□□□□□ -0.63
SCARF1-203ENST00000434376 PRIMA1Q86XR5 153 aa11.08□□□□□ -0.64
SCARF1-203ENST00000434376 IGHV1-58A0A0C4DH39 117 aa11.07□□□□□ -0.64
SCARF1-203ENST00000434376 IGLV1-51P01701 117 aa11.07□□□□□ -0.64
SCARF1-203ENST00000434376 PFN2P35080 140 aa11.07□□□□□ -0.64
SCARF1-203ENST00000434376 Q8N3U1 123 aa11.07□□□□□ -0.64
SCARF1-203ENST00000434376 MIAQ16674 131 aa11.06□□□□□ -0.64
SCARF1-203ENST00000434376 BAHCC1Q9P281 2608 aa11.06□□□□□ -0.64
SCARF1-203ENST00000434376 XCL1P47992 114 aa11.06□□□□□ -0.64
SCARF1-203ENST00000434376 IGLV4-60A0A075B6I1 120 aa11.05□□□□□ -0.64
SCARF1-203ENST00000434376 GYPEP15421 78 aa11.05□□□□□ -0.64
SCARF1-203ENST00000434376 CIRBPQ14011 172 aaKnown RBP11.05□□□□□ -0.64
SCARF1-203ENST00000434376 TMEM101Q96IK0 257 aa11.05□□□□□ -0.64
SCARF1-203ENST00000434376 VSIG2Q96IQ7 327 aa11.05□□□□□ -0.64
SCARF1-203ENST00000434376 PIK3CD-AS1Q5SR53 167 aa11.04□□□□□ -0.64
SCARF1-203ENST00000434376 LITAFQ99732 161 aa11.04□□□□□ -0.64
SCARF1-203ENST00000434376 TMEM243Q9BU79 118 aa11.04□□□□□ -0.64
SCARF1-203ENST00000434376 LINC00242Q5T6M2 205 aa11.03□□□□□ -0.64
SCARF1-203ENST00000434376 GAGE2AQ6NT46 116 aa11.03□□□□□ -0.64
SCARF1-203ENST00000434376 FAM110AQ9BQ89 295 aa11.02□□□□□ -0.64
SCARF1-203ENST00000434376 Q9HAA7 133 aa11.02□□□□□ -0.64
SCARF1-203ENST00000434376 TRAV25A0A0B4J276 109 aa11.02□□□□□ -0.65
SCARF1-203ENST00000434376 H3BT86 120 aa11.02□□□□□ -0.65
SCARF1-203ENST00000434376 LST1O00453 97 aa11.02□□□□□ -0.65
SCARF1-203ENST00000434376 FAM222AQ5U5X8 452 aa11.02□□□□□ -0.65
SCARF1-203ENST00000434376 LINC00526Q96FQ7 95 aa11.02□□□□□ -0.65
SCARF1-203ENST00000434376 OXLD1Q5BKU9 147 aa11.02□□□□□ -0.65
SCARF1-203ENST00000434376 SPANXA1Q9NS26 97 aa11.02□□□□□ -0.65
SCARF1-203ENST00000434376 PRB2P02812 416 aaPredicted RBP11.01□□□□□ -0.65
SCARF1-203ENST00000434376 MRPS36P82909 103 aaKnown RBP11.01□□□□□ -0.65
SCARF1-203ENST00000434376 C9orf153Q5TBE3 101 aa11.01□□□□□ -0.65
SCARF1-203ENST00000434376 C19orf73Q9NVV2 129 aa11.01□□□□□ -0.65
SCARF1-203ENST00000434376 BEAN1Q3B7T3 259 aa11.01□□□□□ -0.65
SCARF1-203ENST00000434376 MRPL23Q16540 153 aaKnown RBP11□□□□□ -0.65
SCARF1-203ENST00000434376 C16orf74Q96GX8 76 aa11□□□□□ -0.65
SCARF1-203ENST00000434376 F5H768 121 aa11□□□□□ -0.65
SCARF1-203ENST00000434376 LINC00158P58513 81 aa10.99□□□□□ -0.65
SCARF1-203ENST00000434376 PLAC8L1A1L4L8 177 aa10.99□□□□□ -0.65
SCARF1-203ENST00000434376 DNAJC30Q96LL9 226 aa10.99□□□□□ -0.65
SCARF1-203ENST00000434376 KLK5Q9Y337 293 aaPredicted RBP10.99□□□□□ -0.65
SCARF1-203ENST00000434376 BAALC-AS2P0C853 105 aa10.98□□□□□ -0.65
SCARF1-203ENST00000434376 DAZ2Q13117 558 aaKnown RBP10.98□□□□□ -0.65
SCARF1-203ENST00000434376 DAZ4Q86SG3 579 aaKnown RBP10.98□□□□□ -0.65
SCARF1-203ENST00000434376 DAZ3Q9NR90 486 aaKnown RBP10.98□□□□□ -0.65
SCARF1-203ENST00000434376 RETNQ9HD89 108 aa10.97□□□□□ -0.65
SCARF1-203ENST00000434376 TINCRA0A1B0GVN0 87 aa10.97□□□□□ -0.65
SCARF1-203ENST00000434376 PYGO1Q9Y3Y4 419 aa10.97□□□□□ -0.65
SCARF1-203ENST00000434376 LINC00308Q8TCZ7 52 aa10.97□□□□□ -0.65
SCARF1-203ENST00000434376 EDA2RQ9HAV5 297 aa10.97□□□□□ -0.65
SCARF1-203ENST00000434376 OR13C6PQ8NH95 151 aa10.96□□□□□ -0.65
SCARF1-203ENST00000434376 SPANXDQ9BXN6 97 aa10.96□□□□□ -0.65
SCARF1-203ENST00000434376 SPANXCQ9NY87 97 aa10.96□□□□□ -0.65
SCARF1-203ENST00000434376 FHL2Q14192 279 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms