RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 BRK1Q8WUW1 75 aa9.36□□□□□ -0.91
PTCH1-207ENST00000429896 SPATA12Q7Z6I5 190 aa9.36□□□□□ -0.91
PTCH1-207ENST00000429896 CHCHD10Q8WYQ3 142 aaPredicted RBP9.36□□□□□ -0.91
PTCH1-207ENST00000429896 ABCA12Q86UK0 2595 aa9.36□□□□□ -0.91
PTCH1-207ENST00000429896 USP9XQ93008 2570 aaPredicted RBP9.35□□□□□ -0.91
PTCH1-207ENST00000429896 H7C423 109 aa9.35□□□□□ -0.91
PTCH1-207ENST00000429896 C14orf177Q52M58 125 aa9.35□□□□□ -0.91
PTCH1-207ENST00000429896 C20orf203Q8NBC4 194 aa9.35□□□□□ -0.91
PTCH1-207ENST00000429896 TP73-AS1Q9UF72 201 aa9.35□□□□□ -0.91
PTCH1-207ENST00000429896 PLXNB1O43157 2135 aa9.35□□□□□ -0.91
PTCH1-207ENST00000429896 IGHV1-58A0A0C4DH39 117 aa9.35□□□□□ -0.91
PTCH1-207ENST00000429896 UPK3BQ9BT76 320 aa9.35□□□□□ -0.91
PTCH1-207ENST00000429896 SDIM1Q6ZPB5 146 aa9.35□□□□□ -0.91
PTCH1-207ENST00000429896 SPATA3Q8NHX4 192 aa9.34□□□□□ -0.91
PTCH1-207ENST00000429896 JMJD1CQ15652 2540 aa9.34□□□□□ -0.91
PTCH1-207ENST00000429896 M0QY20 66 aa9.34□□□□□ -0.91
PTCH1-207ENST00000429896 USP9YO00507 2555 aaPredicted RBP9.34□□□□□ -0.91
PTCH1-207ENST00000429896 PIK3CD-AS1Q5SR53 167 aa9.34□□□□□ -0.91
PTCH1-207ENST00000429896 HECTD1Q9ULT8 2610 aa9.34□□□□□ -0.91
PTCH1-207ENST00000429896 CLUHP3Q96NS8 147 aa9.34□□□□□ -0.91
PTCH1-207ENST00000429896 BPTFQ12830 3046 aa9.33□□□□□ -0.92
PTCH1-207ENST00000429896 UNC80Q8N2C7 3258 aa9.33□□□□□ -0.92
PTCH1-207ENST00000429896 TRBV6-8A0A0A6YYG3 113 aa9.33□□□□□ -0.92
PTCH1-207ENST00000429896 KLK9Q2XQG4 91 aa9.33□□□□□ -0.92
PTCH1-207ENST00000429896 HIGD1BQ9P298 99 aa9.33□□□□□ -0.92
PTCH1-207ENST00000429896 TMEM256-PLSCR3K7ERE1 68 aa9.33□□□□□ -0.92
PTCH1-207ENST00000429896 RPL37AP8A6NKH3 93 aa9.33□□□□□ -0.92
PTCH1-207ENST00000429896 C3orf84H3BNL1 204 aa9.33□□□□□ -0.92
PTCH1-207ENST00000429896 E9PLD3 99 aa9.33□□□□□ -0.92
PTCH1-207ENST00000429896 UBE2D1P51668 147 aa9.32□□□□□ -0.92
PTCH1-207ENST00000429896 IGLV9-49A0A0B4J1Y8 123 aa9.32□□□□□ -0.92
PTCH1-207ENST00000429896 A8MZ25 164 aa9.32□□□□□ -0.92
PTCH1-207ENST00000429896 TET2Q6N021 2002 aaPredicted RBP9.32□□□□□ -0.92
PTCH1-207ENST00000429896 LOC100131303A0A0U1RQF7 123 aa9.32□□□□□ -0.92
PTCH1-207ENST00000429896 ODF1Q14990 250 aa9.32□□□□□ -0.92
PTCH1-207ENST00000429896 TEX49A0A1B0GTD5 131 aa9.32□□□□□ -0.92
PTCH1-207ENST00000429896 TAX1BP3O14907 124 aa9.32□□□□□ -0.92
PTCH1-207ENST00000429896 BPY2O14599 106 aa9.31□□□□□ -0.92
PTCH1-207ENST00000429896 TCL1BO95988 128 aa9.31□□□□□ -0.92
PTCH1-207ENST00000429896 Q6ZTC4 211 aa9.31□□□□□ -0.92
PTCH1-207ENST00000429896 USP24Q9UPU5 2620 aa9.31□□□□□ -0.92
PTCH1-207ENST00000429896 UBE2D4Q9Y2X8 147 aa9.31□□□□□ -0.92
PTCH1-207ENST00000429896 LELP1Q5T871 98 aa9.31□□□□□ -0.92
PTCH1-207ENST00000429896 Q8N976 141 aa9.31□□□□□ -0.92
PTCH1-207ENST00000429896 LAMA2P24043 3122 aaKnown RBP9.31□□□□□ -0.92
PTCH1-207ENST00000429896 ATOX1O00244 68 aa9.31□□□□□ -0.92
PTCH1-207ENST00000429896 CXCL5P42830 114 aa9.31□□□□□ -0.92
PTCH1-207ENST00000429896 RNASE8Q8TDE3 154 aaKnown RBP9.31□□□□□ -0.92
PTCH1-207ENST00000429896 KRTAP10-3P60369 221 aa9.3□□□□□ -0.92
PTCH1-207ENST00000429896 SPANXCQ9NY87 97 aa9.3□□□□□ -0.92
PTCH1-207ENST00000429896 ENHOQ6UWT2 76 aa9.29□□□□□ -0.92
PTCH1-207ENST00000429896 A0A0J9YXY3 114 aa9.29□□□□□ -0.92
PTCH1-207ENST00000429896 RETNLBQ9BQ08 111 aa9.29□□□□□ -0.92
PTCH1-207ENST00000429896 JMJD7-PLA2G4BH0Y9G9 81 aa9.28□□□□□ -0.92
PTCH1-207ENST00000429896 TEN1Q86WV5 123 aa9.28□□□□□ -0.92
PTCH1-207ENST00000429896 C3orf22Q8N5N4 141 aa9.28□□□□□ -0.92
PTCH1-207ENST00000429896 USP17L23D6RBM5 183 aa9.28□□□□□ -0.92
PTCH1-207ENST00000429896 PRR4Q16378 134 aa9.28□□□□□ -0.92
PTCH1-207ENST00000429896 MIAQ16674 131 aa9.28□□□□□ -0.92
PTCH1-207ENST00000429896 TLN2Q9Y4G6 2542 aa9.28□□□□□ -0.92
PTCH1-207ENST00000429896 RNF185Q96GF1 192 aa9.28□□□□□ -0.92
PTCH1-207ENST00000429896 NDUFC2O95298 119 aa9.27□□□□□ -0.93
PTCH1-207ENST00000429896 LINC00310P59036 64 aa9.27□□□□□ -0.93
PTCH1-207ENST00000429896 CDKN2A-AS1Q9UH64 79 aa9.27□□□□□ -0.93
PTCH1-207ENST00000429896 A0A0U1RQV1 116 aa9.27□□□□□ -0.93
PTCH1-207ENST00000429896 SBSPONQ8IVN8 264 aa9.27□□□□□ -0.93
PTCH1-207ENST00000429896 TRBV6-5A0A0K0K1A5 114 aa9.26□□□□□ -0.93
PTCH1-207ENST00000429896 UBE2D3P61077 147 aa9.26□□□□□ -0.93
PTCH1-207ENST00000429896 AKAP13Q12802 2813 aa9.26□□□□□ -0.93
PTCH1-207ENST00000429896 UFSP1Q6NVU6 142 aa9.26□□□□□ -0.93
PTCH1-207ENST00000429896 WFDC13Q8IUB5 93 aa9.25□□□□□ -0.93
PTCH1-207ENST00000429896 UBE2D2P62837 147 aa9.25□□□□□ -0.93
PTCH1-207ENST00000429896 COX8CQ7Z4L0 72 aa9.25□□□□□ -0.93
PTCH1-207ENST00000429896 FHL2Q14192 279 aa9.24□□□□□ -0.93
PTCH1-207ENST00000429896 C7orf33Q8WU49 177 aa9.24□□□□□ -0.93
PTCH1-207ENST00000429896 XIRP2A4UGR9 3374 aa9.24□□□□□ -0.93
PTCH1-207ENST00000429896 POM121L12Q8N7R1 296 aa9.24□□□□□ -0.93
PTCH1-207ENST00000429896 C20orf197Q8N268 126 aa9.23□□□□□ -0.93
PTCH1-207ENST00000429896 F8P00451 2351 aa9.23□□□□□ -0.93
PTCH1-207ENST00000429896 RBX1P62877 108 aa9.23□□□□□ -0.93
PTCH1-207ENST00000429896 NDUFV3P56181 108 aaKnown RBP9.23□□□□□ -0.93
PTCH1-207ENST00000429896 SNURFQ9Y675 71 aa9.23□□□□□ -0.93
PTCH1-207ENST00000429896 TRBV27A0A0K0K1C4 114 aa9.23□□□□□ -0.93
PTCH1-207ENST00000429896 MYO9AB2RTY4 2548 aa9.22□□□□□ -0.93
PTCH1-207ENST00000429896 CNFNQ9BYD5 112 aa9.22□□□□□ -0.93
PTCH1-207ENST00000429896 MDFIQ99750 246 aa9.22□□□□□ -0.93
PTCH1-207ENST00000429896 H3BQ85 93 aa9.21□□□□□ -0.93
PTCH1-207ENST00000429896 TSHBP01222 138 aa9.21□□□□□ -0.93
PTCH1-207ENST00000429896 J3KT08 172 aa9.21□□□□□ -0.93
PTCH1-207ENST00000429896 FLNBO75369 2602 aaKnown RBP9.21□□□□□ -0.93
PTCH1-207ENST00000429896 CELA1Q9UNI1 258 aa9.21□□□□□ -0.94
PTCH1-207ENST00000429896 SPTBN5Q9NRC6 3674 aaKnown RBP9.21□□□□□ -0.94
PTCH1-207ENST00000429896 FAM30AQ9NZY2 134 aa9.21□□□□□ -0.94
PTCH1-207ENST00000429896 ACANP16112 2415 aa9.2□□□□□ -0.94
PTCH1-207ENST00000429896 KRTAP10-11P60412 298 aa9.2□□□□□ -0.94
PTCH1-207ENST00000429896 IGLV4-3A0A075B6K6 122 aa9.2□□□□□ -0.94
PTCH1-207ENST00000429896 C6orf99Q4VX62 202 aa9.2□□□□□ -0.94
PTCH1-207ENST00000429896 MT-ATP8P03928 68 aa9.19□□□□□ -0.94
PTCH1-207ENST00000429896 NRACQ8N912 160 aa9.19□□□□□ -0.94
PTCH1-207ENST00000429896 MAPKAPK5-AS1Q8N8E1 139 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms