RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 ZNF843Q8N446 348 aa6.97□□□□□ -1.29
CD44-206ENST00000415148 CR1P17927 2039 aa6.96□□□□□ -1.29
CD44-206ENST00000415148 TRACP01848 142 aa6.96□□□□□ -1.29
CD44-206ENST00000415148 TRAV13-1A0A0B4J241 112 aa6.96□□□□□ -1.3
CD44-206ENST00000415148 MEIG1Q5JSS6 88 aa6.96□□□□□ -1.3
CD44-206ENST00000415148 Q6ZTI0 123 aa6.96□□□□□ -1.3
CD44-206ENST00000415148 FAM218AQ96MZ4 157 aa6.96□□□□□ -1.3
CD44-206ENST00000415148 TMEM243Q9BU79 118 aa6.96□□□□□ -1.3
CD44-206ENST00000415148 UBE2L6O14933 153 aa6.95□□□□□ -1.3
CD44-206ENST00000415148 FAM110AQ9BQ89 295 aa6.95□□□□□ -1.3
CD44-206ENST00000415148 JMJD1CQ15652 2540 aa6.95□□□□□ -1.3
CD44-206ENST00000415148 TRBV6-4A0A1B0GX49 114 aa6.95□□□□□ -1.3
CD44-206ENST00000415148 CCL24O00175 119 aa6.95□□□□□ -1.3
CD44-206ENST00000415148 SMIM20Q8N5G0 67 aa6.95□□□□□ -1.3
CD44-206ENST00000415148 C16orf74Q96GX8 76 aa6.95□□□□□ -1.3
CD44-206ENST00000415148 SETXQ7Z333 2677 aaKnown RBP6.94□□□□□ -1.3
CD44-206ENST00000415148 DOPEY1Q5JWR5 2465 aa6.94□□□□□ -1.3
CD44-206ENST00000415148 FAM222AQ5U5X8 452 aa6.94□□□□□ -1.3
CD44-206ENST00000415148 Q96MF0 132 aa6.94□□□□□ -1.3
CD44-206ENST00000415148 MYO18BQ8IUG5 2567 aa6.94□□□□□ -1.3
CD44-206ENST00000415148 TRAV13-2A0A0B4J235 113 aa6.94□□□□□ -1.3
CD44-206ENST00000415148 TRBV7-7A0A0K0K1E9 115 aa6.94□□□□□ -1.3
CD44-206ENST00000415148 HIST2H2BCQ6DN03 193 aa6.94□□□□□ -1.3
CD44-206ENST00000415148 OVOL2Q9BRP0 275 aa6.94□□□□□ -1.3
CD44-206ENST00000415148 IMUPQ9GZP8 106 aa6.94□□□□□ -1.3
CD44-206ENST00000415148 TLN2Q9Y4G6 2542 aa6.93□□□□□ -1.3
CD44-206ENST00000415148 NOP10Q9NPE3 64 aaKnown RBP6.93□□□□□ -1.3
CD44-206ENST00000415148 UBR5O95071 2799 aaPredicted RBP6.93□□□□□ -1.3
CD44-206ENST00000415148 RPL28P46779 137 aaKnown RBP6.93□□□□□ -1.3
CD44-206ENST00000415148 KRTAP10-9P60411 292 aa6.93□□□□□ -1.3
CD44-206ENST00000415148 FAM236AA0A1B0GUQ0 79 aa6.92□□□□□ -1.3
CD44-206ENST00000415148 FAM236BA0A1B0GV22 79 aa6.92□□□□□ -1.3
CD44-206ENST00000415148 C9orf129Q5T035 196 aaKnown RBP6.92□□□□□ -1.3
CD44-206ENST00000415148 Q9HAA7 133 aa6.92□□□□□ -1.3
CD44-206ENST00000415148 SETD2Q9BYW2 2564 aaPredicted RBP6.92□□□□□ -1.3
CD44-206ENST00000415148 PLAC8L1A1L4L8 177 aa6.91□□□□□ -1.3
CD44-206ENST00000415148 BAALC-AS2P0C853 105 aa6.91□□□□□ -1.3
CD44-206ENST00000415148 COX7B2Q8TF08 81 aa6.91□□□□□ -1.3
CD44-206ENST00000415148 DNAJC9-AS1A6NH13 148 aa6.91□□□□□ -1.3
CD44-206ENST00000415148 GIG44P09565 113 aaPredicted RBP6.91□□□□□ -1.3
CD44-206ENST00000415148 ABCA12Q86UK0 2595 aa6.91□□□□□ -1.3
CD44-206ENST00000415148 TRGV2A0A075B6R0 118 aa6.9□□□□□ -1.3
CD44-206ENST00000415148 KRTAP1-3Q8IUG1 177 aa6.9□□□□□ -1.3
CD44-206ENST00000415148 SDIM1Q6ZPB5 146 aa6.9□□□□□ -1.31
CD44-206ENST00000415148 LRRK2Q5S007 2527 aa6.89□□□□□ -1.31
CD44-206ENST00000415148 CRPP02741 224 aa6.89□□□□□ -1.31
CD44-206ENST00000415148 INAFM2P0DMQ5 153 aa6.89□□□□□ -1.31
CD44-206ENST00000415148 LINC00643Q86TS7 51 aa6.89□□□□□ -1.31
CD44-206ENST00000415148 SONP18583 2426 aaKnown RBP6.89□□□□□ -1.31
CD44-206ENST00000415148 TRGV4A0A0C4DH28 118 aa6.89□□□□□ -1.31
CD44-206ENST00000415148 LOC100131303A0A0U1RQF7 123 aa6.89□□□□□ -1.31
CD44-206ENST00000415148 A0A1W2PRX2 142 aa6.89□□□□□ -1.31
CD44-206ENST00000415148 IBA57-AS1B1ANH7 110 aa6.89□□□□□ -1.31
CD44-206ENST00000415148 CSNK1G2-AS1Q8NCQ2 148 aa6.89□□□□□ -1.31
CD44-206ENST00000415148 C16orf95Q9H693 158 aa6.89□□□□□ -1.31
CD44-206ENST00000415148 PTPN13Q12923 2485 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 TRBV6-8A0A0A6YYG3 113 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 IGHV3OR16-9A0A0B4J2B5 98 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 H0YGX0 51 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 PLA2G2AP14555 144 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 MIR7-3HGQ8N6C7 128 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 LINC00337Q8N6G1 96 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 SND1-IT1Q9HBX3 110 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 C19orf73Q9NVV2 129 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 NAV2Q8IVL1 2488 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 IGKV2-28A0A075B6P5 120 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 IGKV2D-28P01615 120 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 IGLV1-51P01701 117 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 FHL2Q14192 279 aa6.88□□□□□ -1.31
CD44-206ENST00000415148 A0A087WZ39 114 aa6.87□□□□□ -1.31
CD44-206ENST00000415148 A0A087WYN8 130 aa6.87□□□□□ -1.31
CD44-206ENST00000415148 IGKV3OR2-268A0A0C4DH90 116 aa6.87□□□□□ -1.31
CD44-206ENST00000415148 MALP21145 153 aa6.87□□□□□ -1.31
CD44-206ENST00000415148 C11orf44Q8N8P7 122 aa6.87□□□□□ -1.31
CD44-206ENST00000415148 KLK5Q9Y337 293 aaPredicted RBP6.87□□□□□ -1.31
CD44-206ENST00000415148 LINC00158P58513 81 aa6.86□□□□□ -1.31
CD44-206ENST00000415148 ESM1Q9NQ30 184 aa6.86□□□□□ -1.31
CD44-206ENST00000415148 IGLV4-60A0A075B6I1 120 aa6.86□□□□□ -1.31
CD44-206ENST00000415148 CXCL5P42830 114 aa6.86□□□□□ -1.31
CD44-206ENST00000415148 RPL35AP18077 110 aaKnown RBP6.85□□□□□ -1.31
CD44-206ENST00000415148 GAGE2AQ6NT46 116 aa6.85□□□□□ -1.31
CD44-206ENST00000415148 LINC01006Q8NI28 216 aa6.85□□□□□ -1.31
CD44-206ENST00000415148 TOMM7Q9P0U1 55 aa6.85□□□□□ -1.31
CD44-206ENST00000415148 ATP5G1P05496 136 aa6.84□□□□□ -1.31
CD44-206ENST00000415148 RNASE1P07998 156 aaKnown RBP6.84□□□□□ -1.31
CD44-206ENST00000415148 CCL18P55774 89 aa6.84□□□□□ -1.31
CD44-206ENST00000415148 LINC01561Q8N1V8 128 aa6.84□□□□□ -1.31
CD44-206ENST00000415148 KIR2DL5BQ8NHK3 375 aa6.84□□□□□ -1.31
CD44-206ENST00000415148 SMIM11BQ8TCY0 68 aa6.84□□□□□ -1.31
CD44-206ENST00000415148 HELZ2Q9BYK8 2649 aaKnown RBP6.84□□□□□ -1.31
CD44-206ENST00000415148 WFDC10AQ9H1F0 79 aa6.84□□□□□ -1.31
CD44-206ENST00000415148 TENM4Q6N022 2769 aa6.84□□□□□ -1.31
CD44-206ENST00000415148 LINC00959A0A1B0GUT2 108 aa6.83□□□□□ -1.32
CD44-206ENST00000415148 DNAL4O96015 105 aa6.83□□□□□ -1.32
CD44-206ENST00000415148 CYSTM1Q9H1C7 97 aa6.83□□□□□ -1.32
CD44-206ENST00000415148 A0A1B0GUV1 79 aa6.83□□□□□ -1.32
CD44-206ENST00000415148 LINC00612Q8N6U2 182 aa6.83□□□□□ -1.32
CD44-206ENST00000415148 OBSCN-AS1Q96MR7 158 aa6.83□□□□□ -1.32
CD44-206ENST00000415148 SLPIP03973 132 aa6.82□□□□□ -1.32
CD44-206ENST00000415148 C5orf38Q86SI9 138 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms