RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 INSL4Q14641 139 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 CCDC58Q4VC31 144 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 FAM107BQ9H098 131 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 CCDC167Q9P0B6 97 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 SCP2D1Q9UJQ7 156 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 PAIP2BQ9ULR5 123 aaKnown RBP0.12□□□□□ -2.39
VPS13A-206ENST00000376646 CUL7Q14999 1698 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 LOC400499M0QZD8 3231 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 COL14A1Q05707 1796 aaKnown RBP0.11□□□□□ -2.39
VPS13A-206ENST00000376646 TRBV10-3A0A0K0K1G6 114 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 Q5BKY6 102 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 ZNF818PQ6ZRF7 136 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 WFDC6Q9BQY6 131 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 LINC00312Q9Y6C7 94 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 CASKIN1Q8WXD9 1431 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 RB1CC1Q8TDY2 1594 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 CPS1P31327 1500 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 ABCC10Q5T3U5 1492 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 ZNF518AQ6AHZ1 1483 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 FAM92AA1XBS5 289 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 SPINK1P00995 79 aa0.11□□□□□ -2.39
VPS13A-206ENST00000376646 NWD2Q9ULI1 1742 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 CCL8P80075 99 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 S100A12P80511 92 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 UBE2DNLQ8IWF7 75 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 ARL11Q969Q4 196 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 AHCTF1Q8WYP5 2266 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 PRUNE2Q8WUY3 3088 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 CACNA1CQ13936 2221 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 FAM25AB3EWG3 89 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 FAM25CB3EWG5 89 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 FAM25GB3EWG6 89 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 G3V318 75 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 ZNF609O15014 1411 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 NDUFA2O43678 99 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 GNG7O60262 68 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 RBM3P98179 157 aaKnown RBP0.1□□□□□ -2.39
VPS13A-206ENST00000376646 FAM213BQ8TBF2 198 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 PEG3Q9GZU2 1588 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 IFT172Q9UG01 1749 aa0.1□□□□□ -2.39
VPS13A-206ENST00000376646 LRRC37A3O60309 1634 aa0.09□□□□□ -2.39
VPS13A-206ENST00000376646 IFT140Q96RY7 1462 aa0.09□□□□□ -2.39
VPS13A-206ENST00000376646 SSBP3-AS1Q7Z2R9 100 aa0.09□□□□□ -2.4
VPS13A-206ENST00000376646 TSC22D3Q99576 134 aa0.09□□□□□ -2.4
VPS13A-206ENST00000376646 LINC00470Q9BZP3 86 aa0.09□□□□□ -2.4
VPS13A-206ENST00000376646 PREX1Q8TCU6 1659 aa0.09□□□□□ -2.4
VPS13A-206ENST00000376646 CENPFP49454 3210 aa0.09□□□□□ -2.4
VPS13A-206ENST00000376646 MYH9P35579 1960 aaKnown RBP0.09□□□□□ -2.4
VPS13A-206ENST00000376646 MYH8P13535 1937 aa0.09□□□□□ -2.4
VPS13A-206ENST00000376646 ZNF815PA8K554 130 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 HCG22E2RYF7 251 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 SMIM6P0DI80 62 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 SELENOWP63302 87 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 LSM10Q969L4 123 aaKnown RBP0.08□□□□□ -2.4
VPS13A-206ENST00000376646 AGPAT4-IT1Q9H0P7 198 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 PREX2Q70Z35 1606 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 ASXL3Q9C0F0 2248 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 PKHD1L1Q86WI1 4243 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 VPS13AQ96RL7 3174 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 ASPMQ8IZT6 3477 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 PLCE1Q9P212 2302 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 TRAV13-2A0A0B4J235 113 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 SIX6O95475 246 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 BAGE3Q86Y29 109 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 COPS9Q8WXC6 57 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 CFTRP13569 1480 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 UGGT1Q9NYU2 1555 aa0.08□□□□□ -2.4
VPS13A-206ENST00000376646 PRKDCP78527 4128 aaKnown RBP0.08□□□□□ -2.4
VPS13A-206ENST00000376646 ARAP2Q8WZ64 1704 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 TSC2P49815 1807 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 FOCADQ5VW36 1801 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 MYH7P12883 1935 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 AKAP6Q13023 2319 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 MUC3AQ02505 3323 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 PPP1R17O96001 155 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 HMGN1P05114 100 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 MEIG1Q5JSS6 88 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 CFAP126Q5VTH2 177 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 PKD1P98161 4303 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 ZNF831Q5JPB2 1677 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 WNK2Q9Y3S1 2297 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 SPTBN1Q01082 2364 aaKnown RBP0.07□□□□□ -2.4
VPS13A-206ENST00000376646 MYO15AQ9UKN7 3530 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 PRDM2Q13029 1718 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 MADDQ8WXG6 1647 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 DCAF1Q9Y4B6 1507 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 EEA1Q15075 1411 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 SPENQ96T58 3664 aaKnown RBP0.07□□□□□ -2.4
VPS13A-206ENST00000376646 ADGRL2O95490 1459 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 ERVK-7P63135 1459 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 NRXN1Q9ULB1 1477 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 WDR7Q9Y4E6 1490 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 CCL18P55774 89 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 C10orf128Q5T292 105 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 Q8N8P6 123 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 AQP10Q96PS8 301 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 SNRNP25Q9BV90 132 aaKnown RBP0.07□□□□□ -2.4
VPS13A-206ENST00000376646 RERGLQ9H628 205 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 NPVFQ9HCQ7 196 aa0.07□□□□□ -2.4
VPS13A-206ENST00000376646 SERP1Q9Y6X1 66 aa0.07□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms