RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 TEX29Q8N6K0 151 aa12.84□□□□□ -0.35
PTP4A3-202ENST00000349124 F5H768 121 aa12.84□□□□□ -0.35
PTP4A3-202ENST00000349124 LINC01600Q96MT4 127 aa12.83□□□□□ -0.36
PTP4A3-202ENST00000349124 PLAC8L1A1L4L8 177 aa12.82□□□□□ -0.36
PTP4A3-202ENST00000349124 DAZ2Q13117 558 aaKnown RBP12.82□□□□□ -0.36
PTP4A3-202ENST00000349124 DAZ4Q86SG3 579 aaKnown RBP12.82□□□□□ -0.36
PTP4A3-202ENST00000349124 DAZ3Q9NR90 486 aaKnown RBP12.82□□□□□ -0.36
PTP4A3-202ENST00000349124 TRGV2A0A075B6R0 118 aa12.82□□□□□ -0.36
PTP4A3-202ENST00000349124 C15orf53Q8NAA6 179 aa12.82□□□□□ -0.36
PTP4A3-202ENST00000349124 SNCGO76070 127 aa12.81□□□□□ -0.36
PTP4A3-202ENST00000349124 ANAPC13Q9BS18 74 aa12.81□□□□□ -0.36
PTP4A3-202ENST00000349124 TRAV25A0A0B4J276 109 aa12.81□□□□□ -0.36
PTP4A3-202ENST00000349124 TRBV10-1A0A0K0K1A3 114 aa12.81□□□□□ -0.36
PTP4A3-202ENST00000349124 TTC32Q5I0X7 151 aa12.81□□□□□ -0.36
PTP4A3-202ENST00000349124 GAGE2BQ13066 116 aa12.8□□□□□ -0.36
PTP4A3-202ENST00000349124 GAGE2EQ4V326 116 aa12.8□□□□□ -0.36
PTP4A3-202ENST00000349124 GAGE2DQ9UEU5 116 aa12.8□□□□□ -0.36
PTP4A3-202ENST00000349124 H3BT86 120 aa12.8□□□□□ -0.36
PTP4A3-202ENST00000349124 NHLRC4P0CG21 123 aaPredicted RBP12.8□□□□□ -0.36
PTP4A3-202ENST00000349124 CSDC2Q9Y534 153 aaKnown RBP12.8□□□□□ -0.36
PTP4A3-202ENST00000349124 ITPR2Q14571 2701 aa12.79□□□□□ -0.36
PTP4A3-202ENST00000349124 GAGE6Q13070 117 aa12.79□□□□□ -0.36
PTP4A3-202ENST00000349124 LRRC75A-AS1Q8N1F1 130 aa12.79□□□□□ -0.36
PTP4A3-202ENST00000349124 UBE2L6O14933 153 aa12.78□□□□□ -0.36
PTP4A3-202ENST00000349124 TENM4Q6N022 2769 aa12.78□□□□□ -0.36
PTP4A3-202ENST00000349124 TMEM243Q9BU79 118 aa12.78□□□□□ -0.36
PTP4A3-202ENST00000349124 TOMM7Q9P0U1 55 aa12.78□□□□□ -0.36
PTP4A3-202ENST00000349124 IGLV4-60A0A075B6I1 120 aa12.77□□□□□ -0.36
PTP4A3-202ENST00000349124 FAM19A3Q7Z5A8 133 aa12.77□□□□□ -0.36
PTP4A3-202ENST00000349124 GCN1Q92616 2671 aaKnown RBP12.77□□□□□ -0.37
PTP4A3-202ENST00000349124 LINC01006Q8NI28 216 aa12.76□□□□□ -0.37
PTP4A3-202ENST00000349124 ANK3Q12955 4377 aaKnown RBP12.76□□□□□ -0.37
PTP4A3-202ENST00000349124 SHISA2Q6UWI4 295 aa12.76□□□□□ -0.37
PTP4A3-202ENST00000349124 FAM218AQ96MZ4 157 aa12.76□□□□□ -0.37
PTP4A3-202ENST00000349124 TMEM86BQ8N661 226 aa12.75□□□□□ -0.37
PTP4A3-202ENST00000349124 C19orf73Q9NVV2 129 aa12.75□□□□□ -0.37
PTP4A3-202ENST00000349124 COX7A2LO14548 114 aa12.75□□□□□ -0.37
PTP4A3-202ENST00000349124 TRGV4A0A0C4DH28 118 aa12.74□□□□□ -0.37
PTP4A3-202ENST00000349124 NDUFV3P56181 108 aaKnown RBP12.73□□□□□ -0.37
PTP4A3-202ENST00000349124 MIR7-3HGQ8N6C7 128 aa12.73□□□□□ -0.37
PTP4A3-202ENST00000349124 CSNK1G2-AS1Q8NCQ2 148 aa12.73□□□□□ -0.37
PTP4A3-202ENST00000349124 Q9HAA7 133 aa12.71□□□□□ -0.37
PTP4A3-202ENST00000349124 PDZD2O15018 2839 aa12.71□□□□□ -0.37
PTP4A3-202ENST00000349124 C5orf38Q86SI9 138 aa12.71□□□□□ -0.38
PTP4A3-202ENST00000349124 C16orf74Q96GX8 76 aa12.71□□□□□ -0.38
PTP4A3-202ENST00000349124 DEFB121Q5J5C9 76 aa12.7□□□□□ -0.38
PTP4A3-202ENST00000349124 VWFP04275 2813 aa12.7□□□□□ -0.38
PTP4A3-202ENST00000349124 FHL2Q14192 279 aa12.7□□□□□ -0.38
PTP4A3-202ENST00000349124 LINC00337Q8N6G1 96 aa12.7□□□□□ -0.38
PTP4A3-202ENST00000349124 COX7B2Q8TF08 81 aa12.7□□□□□ -0.38
PTP4A3-202ENST00000349124 CHCHD5Q9BSY4 110 aa12.7□□□□□ -0.38
PTP4A3-202ENST00000349124 DEFB130BP0DP73 79 aa12.69□□□□□ -0.38
PTP4A3-202ENST00000349124 DEFB130AP0DP74 79 aa12.69□□□□□ -0.38
PTP4A3-202ENST00000349124 C22orf24Q9Y442 160 aa12.69□□□□□ -0.38
PTP4A3-202ENST00000349124 IGKV2-28A0A075B6P5 120 aa12.69□□□□□ -0.38
PTP4A3-202ENST00000349124 TRBV6-4A0A1B0GX49 114 aa12.69□□□□□ -0.38
PTP4A3-202ENST00000349124 IGKV2D-28P01615 120 aa12.69□□□□□ -0.38
PTP4A3-202ENST00000349124 IGLV1-51P01701 117 aa12.69□□□□□ -0.38
PTP4A3-202ENST00000349124 HERV-K104P63124 156 aa12.69□□□□□ -0.38
PTP4A3-202ENST00000349124 BAALC-AS2P0C853 105 aa12.68□□□□□ -0.38
PTP4A3-202ENST00000349124 HIVEP2P31629 2446 aa12.68□□□□□ -0.38
PTP4A3-202ENST00000349124 B5MCH6 92 aa12.68□□□□□ -0.38
PTP4A3-202ENST00000349124 LINC00158P58513 81 aa12.68□□□□□ -0.38
PTP4A3-202ENST00000349124 TRBV6-8A0A0A6YYG3 113 aa12.68□□□□□ -0.38
PTP4A3-202ENST00000349124 C11orf68Q9H3H3 251 aaKnown RBP12.68□□□□□ -0.38
PTP4A3-202ENST00000349124 CCDC179H3BU77 68 aa12.67□□□□□ -0.38
PTP4A3-202ENST00000349124 PFN2P35080 140 aa12.67□□□□□ -0.38
PTP4A3-202ENST00000349124 KRTAP1-1Q07627 177 aa12.67□□□□□ -0.38
PTP4A3-202ENST00000349124 OVOL2Q9BRP0 275 aa12.67□□□□□ -0.38
PTP4A3-202ENST00000349124 IGHV3OR16-9A0A0B4J2B5 98 aa12.66□□□□□ -0.38
PTP4A3-202ENST00000349124 SND1-IT1Q9HBX3 110 aa12.66□□□□□ -0.38
PTP4A3-202ENST00000349124 SS18L2Q9UHA2 77 aa12.66□□□□□ -0.38
PTP4A3-202ENST00000349124 A0A096LPF7 62 aa12.65□□□□□ -0.38
PTP4A3-202ENST00000349124 SMCR5Q8TEV8 140 aa12.64□□□□□ -0.39
PTP4A3-202ENST00000349124 COPS9Q8WXC6 57 aa12.64□□□□□ -0.39
PTP4A3-202ENST00000349124 NOTCH2Q04721 2471 aa12.64□□□□□ -0.39
PTP4A3-202ENST00000349124 CCL18P55774 89 aa12.63□□□□□ -0.39
PTP4A3-202ENST00000349124 CLPSL2Q6UWE3 100 aa12.63□□□□□ -0.39
PTP4A3-202ENST00000349124 FAM240AA0A1B0GVK7 77 aa12.62□□□□□ -0.39
PTP4A3-202ENST00000349124 Q6Q795 121 aa12.62□□□□□ -0.39
PTP4A3-202ENST00000349124 CRPP02741 224 aa12.62□□□□□ -0.39
PTP4A3-202ENST00000349124 C9orf129Q5T035 196 aaKnown RBP12.62□□□□□ -0.39
PTP4A3-202ENST00000349124 SMIM11BQ8TCY0 68 aa12.62□□□□□ -0.39
PTP4A3-202ENST00000349124 A0A087WYN8 130 aa12.61□□□□□ -0.39
PTP4A3-202ENST00000349124 TRACP01848 142 aa12.61□□□□□ -0.39
PTP4A3-202ENST00000349124 ATP5G1P05496 136 aa12.61□□□□□ -0.39
PTP4A3-202ENST00000349124 XCL1P47992 114 aa12.61□□□□□ -0.39
PTP4A3-202ENST00000349124 TRAV13-2A0A0B4J235 113 aa12.6□□□□□ -0.39
PTP4A3-202ENST00000349124 RNASE1P07998 156 aaKnown RBP12.6□□□□□ -0.39
PTP4A3-202ENST00000349124 LINC00959A0A1B0GUT2 108 aa12.6□□□□□ -0.39
PTP4A3-202ENST00000349124 RPL28P46779 137 aaKnown RBP12.6□□□□□ -0.39
PTP4A3-202ENST00000349124 HELZ2Q9BYK8 2649 aaKnown RBP12.59□□□□□ -0.39
PTP4A3-202ENST00000349124 CMC4P56277 68 aaPredicted RBP12.59□□□□□ -0.39
PTP4A3-202ENST00000349124 SMR3AQ99954 134 aa12.59□□□□□ -0.39
PTP4A3-202ENST00000349124 FASNP49327 2511 aaKnown RBP12.59□□□□□ -0.39
PTP4A3-202ENST00000349124 A0A087WZ39 114 aa12.59□□□□□ -0.39
PTP4A3-202ENST00000349124 GYPEP15421 78 aa12.59□□□□□ -0.39
PTP4A3-202ENST00000349124 C16orf95Q9H693 158 aa12.59□□□□□ -0.39
PTP4A3-202ENST00000349124 KRTAP10-3P60369 221 aa12.58□□□□□ -0.4
PTP4A3-202ENST00000349124 SPATA3Q8NHX4 192 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms